RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 H0YCG3 227 aa11.08□□□□□ -0.64
LIG1-220ENST00000601091 AHCYL1O43865 530 aa11.08□□□□□ -0.64
LIG1-220ENST00000601091 ECE2O60344 883 aa11.08□□□□□ -0.64
LIG1-220ENST00000601091 CHRNA3P32297 505 aa11.08□□□□□ -0.64
LIG1-220ENST00000601091 NFIAQ12857 509 aa11.08□□□□□ -0.64
LIG1-220ENST00000601091 INAQ16352 499 aa11.08□□□□□ -0.64
LIG1-220ENST00000601091 ZC2HC1CQ53FD0 456 aaPredicted RBP11.08□□□□□ -0.64
LIG1-220ENST00000601091 ZNF571Q7Z3V5 609 aaPredicted RBP11.08□□□□□ -0.64
LIG1-220ENST00000601091 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.08□□□□□ -0.64
LIG1-220ENST00000601091 BAP1Q92560 729 aa11.08□□□□□ -0.64
LIG1-220ENST00000601091 QTRT2Q9H974 415 aaKnown RBP11.08□□□□□ -0.64
LIG1-220ENST00000601091 PFASO15067 1338 aa11.08□□□□□ -0.64
LIG1-220ENST00000601091 USP54Q70EL1 1684 aa11.08□□□□□ -0.64
LIG1-220ENST00000601091 EIF3DO15371 548 aaKnown RBP eCLIP11.08□□□□□ -0.64
LIG1-220ENST00000601091 P4HBP07237 508 aaKnown RBP11.08□□□□□ -0.64
LIG1-220ENST00000601091 PCNAP12004 261 aa11.08□□□□□ -0.64
LIG1-220ENST00000601091 KRT15P19012 456 aa11.08□□□□□ -0.64
LIG1-220ENST00000601091 PMS2P54278 862 aa11.08□□□□□ -0.64
LIG1-220ENST00000601091 BBOF1Q8ND07 529 aa11.08□□□□□ -0.64
LIG1-220ENST00000601091 DNAJC19Q96DA6 116 aa11.08□□□□□ -0.64
LIG1-220ENST00000601091 AGPAT1Q99943 283 aa11.08□□□□□ -0.64
LIG1-220ENST00000601091 HPS4Q9NQG7 708 aa11.08□□□□□ -0.64
LIG1-220ENST00000601091 AGTPBP1Q9UPW5 1226 aa11.08□□□□□ -0.64
LIG1-220ENST00000601091 R3HDM2Q9Y2K5 976 aaKnown RBP11.08□□□□□ -0.64
LIG1-220ENST00000601091 IVNS1ABPQ9Y6Y0 642 aa11.08□□□□□ -0.64
LIG1-220ENST00000601091 EMSYQ7Z589 1322 aa11.07□□□□□ -0.64
LIG1-220ENST00000601091 BCL9LQ86UU0 1499 aa11.07□□□□□ -0.64
LIG1-220ENST00000601091 RSPH10B2B2RC85 870 aa11.07□□□□□ -0.64
LIG1-220ENST00000601091 MSH4O15457 936 aa11.07□□□□□ -0.64
LIG1-220ENST00000601091 SGTAO43765 313 aa11.07□□□□□ -0.64
LIG1-220ENST00000601091 RTN2O75298 545 aa11.07□□□□□ -0.64
LIG1-220ENST00000601091 AKAP3O75969 853 aa11.07□□□□□ -0.64
LIG1-220ENST00000601091 TMEM253P0C7T8 217 aa11.07□□□□□ -0.64
LIG1-220ENST00000601091 RSPH10BP0C881 870 aa11.07□□□□□ -0.64
LIG1-220ENST00000601091 ATP2A2P16615 1042 aaKnown RBP11.07□□□□□ -0.64
LIG1-220ENST00000601091 TBX4P57082 545 aa11.07□□□□□ -0.64
LIG1-220ENST00000601091 DHX34Q14147 1143 aaKnown RBP11.07□□□□□ -0.64
LIG1-220ENST00000601091 STRIP1Q5VSL9 837 aa11.07□□□□□ -0.64
LIG1-220ENST00000601091 ZNF746Q6NUN9 644 aaPredicted RBP11.07□□□□□ -0.64
LIG1-220ENST00000601091 RINT1Q6NUQ1 792 aa11.07□□□□□ -0.64
LIG1-220ENST00000601091 VSIG1Q86XK7 387 aa11.07□□□□□ -0.64
LIG1-220ENST00000601091 CCDC110Q8TBZ0 833 aa11.07□□□□□ -0.64
LIG1-220ENST00000601091 HAS1Q92839 578 aa11.07□□□□□ -0.64
LIG1-220ENST00000601091 DTNBP1Q96EV8 351 aa11.07□□□□□ -0.64
LIG1-220ENST00000601091 GJD4Q96KN9 370 aaPredicted RBP11.07□□□□□ -0.64
LIG1-220ENST00000601091 TTYH3Q9C0H2 523 aa11.07□□□□□ -0.64
LIG1-220ENST00000601091 MYO3BQ8WXR4 1341 aa11.07□□□□□ -0.64
LIG1-220ENST00000601091 IQCA1LA6NCM1 817 aa11.07□□□□□ -0.64
LIG1-220ENST00000601091 RNF8O76064 485 aa11.07□□□□□ -0.64
LIG1-220ENST00000601091 GYS1P13807 737 aa11.07□□□□□ -0.64
LIG1-220ENST00000601091 SHMT1P34896 483 aa11.07□□□□□ -0.64
LIG1-220ENST00000601091 CASP4P49662 377 aa11.07□□□□□ -0.64
LIG1-220ENST00000601091 SLC8A3P57103 927 aa11.07□□□□□ -0.64
LIG1-220ENST00000601091 KCNMA1Q12791 1236 aa11.07□□□□□ -0.64
LIG1-220ENST00000601091 RASA2Q15283 850 aa11.07□□□□□ -0.64
LIG1-220ENST00000601091 TRADDQ15628 312 aa11.07□□□□□ -0.64
LIG1-220ENST00000601091 NEK5Q6P3R8 708 aa11.07□□□□□ -0.64
LIG1-220ENST00000601091 GJB7Q6PEY0 223 aa11.07□□□□□ -0.64
LIG1-220ENST00000601091 MIGA2Q7L4E1 593 aa11.07□□□□□ -0.64
LIG1-220ENST00000601091 TSEN2Q8NCE0 465 aaKnown RBP11.07□□□□□ -0.64
LIG1-220ENST00000601091 TRAF3IP3Q9Y228 551 aa11.07□□□□□ -0.64
LIG1-220ENST00000601091 TSC22D4Q9Y3Q8 395 aa11.07□□□□□ -0.64
LIG1-220ENST00000601091 CCDC159P0C7I6 412 aa11.07□□□□□ -0.64
LIG1-220ENST00000601091 MLH1P40692 756 aa11.07□□□□□ -0.64
LIG1-220ENST00000601091 ZBTB16Q05516 673 aa11.07□□□□□ -0.64
LIG1-220ENST00000601091 RALGDSQ12967 914 aa11.07□□□□□ -0.64
LIG1-220ENST00000601091 TRPC3Q13507 836 aa11.07□□□□□ -0.64
LIG1-220ENST00000601091 ITGA7Q13683 1181 aa11.07□□□□□ -0.64
LIG1-220ENST00000601091 GPR162Q16538 588 aa11.07□□□□□ -0.64
LIG1-220ENST00000601091 GRAMD4Q6IC98 578 aa11.07□□□□□ -0.64
LIG1-220ENST00000601091 ACTRT1Q8TDG2 376 aa11.07□□□□□ -0.64
LIG1-220ENST00000601091 ZNF473Q8WTR7 871 aaKnown RBP11.07□□□□□ -0.64
LIG1-220ENST00000601091 CEP170P1Q96L14 293 aa11.07□□□□□ -0.64
LIG1-220ENST00000601091 KCND2Q9NZV8 630 aa11.07□□□□□ -0.64
LIG1-220ENST00000601091 KLHL14Q9P2G3 628 aa11.07□□□□□ -0.64
LIG1-220ENST00000601091 HERC5Q9UII4 1024 aaKnown RBP11.07□□□□□ -0.64
LIG1-220ENST00000601091 ZNF263O14978 683 aa11.06□□□□□ -0.64
LIG1-220ENST00000601091 SUN1O94901 812 aa11.06□□□□□ -0.64
LIG1-220ENST00000601091 HSD17B3P37058 310 aa11.06□□□□□ -0.64
LIG1-220ENST00000601091 PSMC6P62333 389 aa11.06□□□□□ -0.64
LIG1-220ENST00000601091 MXRA7P84157 204 aa11.06□□□□□ -0.64
LIG1-220ENST00000601091 BFSP1Q12934 665 aa11.06□□□□□ -0.64
LIG1-220ENST00000601091 SNCBQ16143 134 aa11.06□□□□□ -0.64
LIG1-220ENST00000601091 C1orf228Q6PIY5 440 aa11.06□□□□□ -0.64
LIG1-220ENST00000601091 FOXR2Q6PJQ5 311 aa11.06□□□□□ -0.64
LIG1-220ENST00000601091 KDM7AQ6ZMT4 941 aa11.06□□□□□ -0.64
LIG1-220ENST00000601091 NIM1KQ8IY84 436 aa11.06□□□□□ -0.64
LIG1-220ENST00000601091 DEPTORQ8TB45 409 aa11.06□□□□□ -0.64
LIG1-220ENST00000601091 FBF1Q8TES7 1133 aa11.06□□□□□ -0.64
LIG1-220ENST00000601091 RUSC1Q9BVN2 902 aa11.06□□□□□ -0.64
LIG1-220ENST00000601091 BATF3Q9NR55 127 aa11.06□□□□□ -0.64
LIG1-220ENST00000601091 GAKO14976 1311 aa11.06□□□□□ -0.64
LIG1-220ENST00000601091 TEX28O15482 410 aa11.06□□□□□ -0.64
LIG1-220ENST00000601091 BUB1BO60566 1050 aaPredicted RBP11.06□□□□□ -0.64
LIG1-220ENST00000601091 TCF3P15923 654 aa11.06□□□□□ -0.64
LIG1-220ENST00000601091 EIF2AK2P19525 551 aaKnown RBP11.06□□□□□ -0.64
LIG1-220ENST00000601091 SREBF1P36956 1147 aa11.06□□□□□ -0.64
LIG1-220ENST00000601091 QARSP47897 775 aaKnown RBP11.06□□□□□ -0.64
LIG1-220ENST00000601091 KIAA1755Q5JYT7 1200 aa11.06□□□□□ -0.64
LIG1-220ENST00000601091 CCDC13Q8IYE1 715 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 187.3 ms