RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 STK38LQ9Y2H1 464 aa9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 PTPN22Q9Y2R2 807 aa9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 MYH11P35749 1972 aa9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 GHRP10912 638 aa9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 CCNHP51946 323 aaPredicted RBP9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 BIRC3Q13489 604 aa9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 ITGA7Q13683 1181 aa9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 KRT31Q15323 416 aa9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 PTGISQ16647 500 aa9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 RAD9BQ6WBX8 426 aa9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 DHTKD1Q96HY7 919 aaPredicted RBP9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 POP1Q99575 1024 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 TUBGCP2Q9BSJ2 902 aa9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 SPATS2LQ9NUQ6 558 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 MYO6Q9UM54 1294 aa9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 PIN4Q9Y237 131 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 HES2Q9Y543 173 aa9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 HSF2BPO75031 334 aa9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 EPB41P11171 864 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 TNNI1P19237 187 aa9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 ACLYP53396 1101 aa9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 FKBP3Q00688 224 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 PRPF4BQ13523 1007 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 TFDP1Q14186 410 aa9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 NCAPHQ15003 741 aa9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 ZNF568Q3ZCX4 644 aa9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 GDF6Q6KF10 455 aaPredicted RBP9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 HIBCHQ6NVY1 386 aaPredicted RBP9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 VSTM4Q8IW00 320 aa9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 MSL3Q8N5Y2 521 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 CEP120Q8N960 986 aa9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 SPATA20Q8TB22 786 aa9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 ENOX1Q8TC92 643 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 KCNV2Q8TDN2 545 aa9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 MIEF2Q96C03 454 aa9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 MSTO1Q9BUK6 570 aa9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 DHX33Q9H6R0 707 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 MINDY3Q9H8M7 445 aa9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 KLC4Q9NSK0 619 aa9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 TBX20Q9UMR3 447 aa9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 CHUKO15111 745 aa9.34□□□□□ -0.91
LIMCH1-209ENST00000509277 KIF1CO43896 1103 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-209ENST00000509277 MAFO75444 373 aaPredicted RBP9.34□□□□□ -0.91
LIMCH1-209ENST00000509277 STBD1O95210 358 aa9.34□□□□□ -0.91
LIMCH1-209ENST00000509277 KRT13P13646 458 aa9.34□□□□□ -0.91
LIMCH1-209ENST00000509277 RPL13P26373 211 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-209ENST00000509277 ERCC5P28715 1186 aaPredicted RBP9.34□□□□□ -0.91
LIMCH1-209ENST00000509277 RFC5P40937 340 aa9.34□□□□□ -0.91
LIMCH1-209ENST00000509277 CCL23P55773 120 aa9.34□□□□□ -0.91
LIMCH1-209ENST00000509277 NT5DC1Q5TFE4 455 aa9.34□□□□□ -0.91
LIMCH1-209ENST00000509277 IER5Q5VY09 327 aa9.34□□□□□ -0.91
LIMCH1-209ENST00000509277 FMNL3Q8IVF7 1028 aa9.34□□□□□ -0.91
LIMCH1-209ENST00000509277 FAM186BQ8IYM0 893 aa9.34□□□□□ -0.91
LIMCH1-209ENST00000509277 DUSP9Q99956 384 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-209ENST00000509277 SELENOOQ9BVL4 669 aa9.34□□□□□ -0.91
LIMCH1-209ENST00000509277 TMEM106CQ9BVX2 250 aa9.34□□□□□ -0.91
LIMCH1-209ENST00000509277 KATNAL1Q9BW62 490 aa9.34□□□□□ -0.91
LIMCH1-209ENST00000509277 MED4Q9NPJ6 270 aa9.34□□□□□ -0.91
LIMCH1-209ENST00000509277 NLRC4Q9NPP4 1024 aa9.34□□□□□ -0.91
LIMCH1-209ENST00000509277 EHD2Q9NZN4 543 aa9.34□□□□□ -0.91
LIMCH1-209ENST00000509277 ARMCX3Q9UH62 379 aaPredicted RBP9.34□□□□□ -0.91
LIMCH1-209ENST00000509277 TPX2Q9ULW0 747 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-209ENST00000509277 RBBP6Q7Z6E9 1792 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-209ENST00000509277 EMSYQ7Z589 1322 aa9.34□□□□□ -0.91
LIMCH1-209ENST00000509277 EME2A4GXA9 379 aaPredicted RBP9.34□□□□□ -0.91
LIMCH1-209ENST00000509277 CLDN3O15551 220 aa9.34□□□□□ -0.91
LIMCH1-209ENST00000509277 C22orf31O95567 290 aa9.34□□□□□ -0.91
LIMCH1-209ENST00000509277 KRT19P08727 400 aa9.34□□□□□ -0.91
LIMCH1-209ENST00000509277 KRT9P35527 623 aa9.34□□□□□ -0.91
LIMCH1-209ENST00000509277 KLK7P49862 253 aa9.34□□□□□ -0.91
LIMCH1-209ENST00000509277 CYP27A1Q02318 531 aa9.34□□□□□ -0.91
LIMCH1-209ENST00000509277 HIC1Q14526 733 aa9.34□□□□□ -0.91
LIMCH1-209ENST00000509277 ZNF484Q5JVG2 852 aa9.34□□□□□ -0.91
LIMCH1-209ENST00000509277 TWF2Q6IBS0 349 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-209ENST00000509277 TTI2Q6NXR4 508 aa9.34□□□□□ -0.91
LIMCH1-209ENST00000509277 CBWD2Q8IUF1 395 aa9.34□□□□□ -0.91
LIMCH1-209ENST00000509277 PCSK9Q8NBP7 692 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-209ENST00000509277 TMEM161BQ8NDZ6 487 aa9.34□□□□□ -0.91
LIMCH1-209ENST00000509277 DIS3LQ8TF46 1054 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-209ENST00000509277 RSRC1Q96IZ7 334 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-209ENST00000509277 KLK14Q9P0G3 267 aa9.34□□□□□ -0.91
LIMCH1-209ENST00000509277 EXOC7Q9UPT5 735 aa9.34□□□□□ -0.91
LIMCH1-209ENST00000509277 A0A0G2JMZ2 1700 aa9.34□□□□□ -0.91
LIMCH1-209ENST00000509277 TLDC2A0PJX2 215 aa9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 GOLGA6L10A6NI86 522 aa9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 PPP1R12AO14974 1030 aaPredicted RBP9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 LYPLA2O95372 231 aa9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 TRIM21P19474 475 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 PHKA2P46019 1235 aa9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 GCLMP48507 274 aa9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 SNCBQ16143 134 aa9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 FAM117BQ6P1L5 589 aa9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 CTU1Q7Z7A3 348 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 DEFB128Q7Z7B8 93 aa9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 ARL8AQ96BM9 186 aa9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 FNBP1Q96RU3 617 aa9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 MMS19Q96T76 1030 aa9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 AGPAT3Q9NRZ7 376 aa9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 TOPORSQ9NS56 1045 aaPredicted RBP9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms