RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 MYPNQ86TC9 1320 aa5.27□□□□□ -1.57
VPS29-202ENST00000447578 KIF21BO75037 1637 aa5.27□□□□□ -1.57
VPS29-202ENST00000447578 TRIM24O15164 1050 aa5.27□□□□□ -1.57
VPS29-202ENST00000447578 MAFGO15525 162 aa5.27□□□□□ -1.57
VPS29-202ENST00000447578 PRPF3O43395 683 aaKnown RBP5.27□□□□□ -1.57
VPS29-202ENST00000447578 B3GALT2O43825 422 aa5.27□□□□□ -1.57
VPS29-202ENST00000447578 LY86O95711 162 aa5.27□□□□□ -1.57
VPS29-202ENST00000447578 U2AF1L5P0DN76 240 aaPredicted RBP5.27□□□□□ -1.57
VPS29-202ENST00000447578 LAG3P18627 525 aa5.27□□□□□ -1.57
VPS29-202ENST00000447578 SESN3P58005 492 aa5.27□□□□□ -1.57
VPS29-202ENST00000447578 U2AF1Q01081 240 aaKnown RBP eCLIP5.27□□□□□ -1.57
VPS29-202ENST00000447578 VPS72Q15906 364 aa5.27□□□□□ -1.57
VPS29-202ENST00000447578 CCDC142Q17RM4 750 aa5.27□□□□□ -1.57
VPS29-202ENST00000447578 PGM2L1Q6PCE3 622 aa5.27□□□□□ -1.57
VPS29-202ENST00000447578 CBARPQ8N350 705 aaPredicted RBP5.27□□□□□ -1.57
VPS29-202ENST00000447578 MAGEB6Q8N7X4 407 aa5.27□□□□□ -1.57
VPS29-202ENST00000447578 OR52N2Q8NGI0 321 aa5.27□□□□□ -1.57
VPS29-202ENST00000447578 NTN5Q8WTR8 489 aaPredicted RBP5.27□□□□□ -1.57
VPS29-202ENST00000447578 RHOBTB2Q9BYZ6 727 aa5.27□□□□□ -1.57
VPS29-202ENST00000447578 USP18Q9UMW8 372 aa5.27□□□□□ -1.57
VPS29-202ENST00000447578 ANKRD6Q9Y2G4 727 aa5.27□□□□□ -1.57
VPS29-202ENST00000447578 CLIP1P30622 1438 aa5.26□□□□□ -1.57
VPS29-202ENST00000447578 LCHNA4D1U4 455 aa5.26□□□□□ -1.57
VPS29-202ENST00000447578 K7ESF4 209 aa5.26□□□□□ -1.57
VPS29-202ENST00000447578 LEFTY2O00292 366 aa5.26□□□□□ -1.57
VPS29-202ENST00000447578 MT-CO1P00395 513 aa5.26□□□□□ -1.57
VPS29-202ENST00000447578 GYPEP15421 78 aa5.26□□□□□ -1.57
VPS29-202ENST00000447578 IARSP41252 1262 aaKnown RBP5.26□□□□□ -1.57
VPS29-202ENST00000447578 KLF1Q13351 362 aaPredicted RBP5.26□□□□□ -1.57
VPS29-202ENST00000447578 MRPL49Q13405 166 aaKnown RBP5.26□□□□□ -1.57
VPS29-202ENST00000447578 DDB1Q16531 1140 aa5.26□□□□□ -1.57
VPS29-202ENST00000447578 ZBTB41Q5SVQ8 909 aa5.26□□□□□ -1.57
VPS29-202ENST00000447578 SYCP2LQ5T4T6 812 aa5.26□□□□□ -1.57
VPS29-202ENST00000447578 CXorf57Q6NSI4 855 aaKnown RBP5.26□□□□□ -1.57
VPS29-202ENST00000447578 OLFML1Q6UWY5 402 aa5.26□□□□□ -1.57
VPS29-202ENST00000447578 FAM83AQ86UY5 434 aa5.26□□□□□ -1.57
VPS29-202ENST00000447578 PNMA8AQ86V59 439 aaPredicted RBP5.26□□□□□ -1.57
VPS29-202ENST00000447578 TPH2Q8IWU9 490 aa5.26□□□□□ -1.57
VPS29-202ENST00000447578 UNC5BQ8IZJ1 945 aa5.26□□□□□ -1.57
VPS29-202ENST00000447578 MSL3Q8N5Y2 521 aaKnown RBP5.26□□□□□ -1.57
VPS29-202ENST00000447578 LILRA3Q8N6C8 439 aaPredicted RBP5.26□□□□□ -1.57
VPS29-202ENST00000447578 SLC5A5Q92911 643 aa5.26□□□□□ -1.57
VPS29-202ENST00000447578 ZNF496Q96IT1 587 aaPredicted RBP5.26□□□□□ -1.57
VPS29-202ENST00000447578 FAXDC2Q96IV6 333 aa5.26□□□□□ -1.57
VPS29-202ENST00000447578 FDXACB1Q9BRP7 624 aaPredicted RBP5.26□□□□□ -1.57
VPS29-202ENST00000447578 NDC1Q9BTX1 674 aa5.26□□□□□ -1.57
VPS29-202ENST00000447578 SYNPO2LQ9H987 977 aa5.26□□□□□ -1.57
VPS29-202ENST00000447578 TRPM5Q9NZQ8 1165 aa5.26□□□□□ -1.57
VPS29-202ENST00000447578 PCDHB6Q9Y5E3 794 aa5.26□□□□□ -1.57
VPS29-202ENST00000447578 COMMD10Q9Y6G5 202 aa5.26□□□□□ -1.57
VPS29-202ENST00000447578 TOP2BQ02880 1626 aa5.26□□□□□ -1.57
VPS29-202ENST00000447578 RAPGEF2Q9Y4G8 1499 aa5.26□□□□□ -1.57
VPS29-202ENST00000447578 WASHC2AQ641Q2 1341 aa5.25□□□□□ -1.57
VPS29-202ENST00000447578 NRP1O14786 923 aa5.25□□□□□ -1.57
VPS29-202ENST00000447578 RECQLP46063 649 aaPredicted RBP5.25□□□□□ -1.57
VPS29-202ENST00000447578 ERVK-21P61565 698 aa5.25□□□□□ -1.57
VPS29-202ENST00000447578 BRD3Q15059 726 aa5.25□□□□□ -1.57
VPS29-202ENST00000447578 PCBP2Q15366 365 aaKnown RBP eCLIP5.25□□□□□ -1.57
VPS29-202ENST00000447578 INAVAQ3KP66 663 aa5.25□□□□□ -1.57
VPS29-202ENST00000447578 BROXQ5VW32 411 aa5.25□□□□□ -1.57
VPS29-202ENST00000447578 ZZZ3Q8IYH5 903 aa5.25□□□□□ -1.57
VPS29-202ENST00000447578 CLRN3Q8NCR9 226 aa5.25□□□□□ -1.57
VPS29-202ENST00000447578 MYEOVQ96EZ4 313 aa5.25□□□□□ -1.57
VPS29-202ENST00000447578 IL17RAQ96F46 866 aa5.25□□□□□ -1.57
VPS29-202ENST00000447578 MPHOSPH6Q99547 160 aaKnown RBP5.25□□□□□ -1.57
VPS29-202ENST00000447578 TEX101Q9BY14 249 aa5.25□□□□□ -1.57
VPS29-202ENST00000447578 WDR11Q9BZH6 1224 aa5.25□□□□□ -1.57
VPS29-202ENST00000447578 SLC13A1Q9BZW2 595 aa5.25□□□□□ -1.57
VPS29-202ENST00000447578 MS4A5Q9H3V2 200 aa5.25□□□□□ -1.57
VPS29-202ENST00000447578 TOR3AQ9H497 397 aa5.25□□□□□ -1.57
VPS29-202ENST00000447578 CYP4F11Q9HBI6 524 aa5.25□□□□□ -1.57
VPS29-202ENST00000447578 C14orf119Q9NWQ9 140 aa5.25□□□□□ -1.57
VPS29-202ENST00000447578 PTGFRNQ9P2B2 879 aa5.25□□□□□ -1.57
VPS29-202ENST00000447578 MRFAP1Q9Y605 127 aa5.25□□□□□ -1.57
VPS29-202ENST00000447578 ZAR1LA6NP61 321 aa5.24□□□□□ -1.57
VPS29-202ENST00000447578 VSTM5A8MXK1 200 aa5.24□□□□□ -1.57
VPS29-202ENST00000447578 KIAA0355O15063 1070 aa5.24□□□□□ -1.57
VPS29-202ENST00000447578 NCR1O76036 304 aa5.24□□□□□ -1.57
VPS29-202ENST00000447578 PF4V1P10720 104 aa5.24□□□□□ -1.57
VPS29-202ENST00000447578 FBLP22087 321 aaKnown RBP5.24□□□□□ -1.57
VPS29-202ENST00000447578 SCAND1P57086 179 aa5.24□□□□□ -1.57
VPS29-202ENST00000447578 MRPS21P82921 87 aaKnown RBP5.24□□□□□ -1.57
VPS29-202ENST00000447578 MINDY4Q4G0A6 757 aa5.24□□□□□ -1.57
VPS29-202ENST00000447578 Q6YL49 198 aa5.24□□□□□ -1.57
VPS29-202ENST00000447578 TAS1R1Q7RTX1 841 aa5.24□□□□□ -1.57
VPS29-202ENST00000447578 DGKHQ86XP1 1220 aa5.24□□□□□ -1.57
VPS29-202ENST00000447578 CPA6Q8N4T0 437 aa5.24□□□□□ -1.57
VPS29-202ENST00000447578 EFHBQ8N7U6 833 aa5.24□□□□□ -1.57
VPS29-202ENST00000447578 CDYL2Q8N8U2 506 aa5.24□□□□□ -1.57
VPS29-202ENST00000447578 GLB1L3Q8NCI6 653 aaPredicted RBP5.24□□□□□ -1.57
VPS29-202ENST00000447578 C1orf162Q8NEQ5 155 aaPredicted RBP5.24□□□□□ -1.57
VPS29-202ENST00000447578 ZNF764Q96H86 408 aaPredicted RBP5.24□□□□□ -1.57
VPS29-202ENST00000447578 BBC3Q96PG8 261 aaPredicted RBP5.24□□□□□ -1.57
VPS29-202ENST00000447578 PDCD2LQ9BRP1 358 aa5.24□□□□□ -1.57
VPS29-202ENST00000447578 SLC46A2Q9BY10 475 aa5.24□□□□□ -1.57
VPS29-202ENST00000447578 SERHL2Q9H4I8 314 aa5.24□□□□□ -1.57
VPS29-202ENST00000447578 TCF7L1Q9HCS4 588 aa5.24□□□□□ -1.57
VPS29-202ENST00000447578 MKS1Q9NXB0 559 aa5.24□□□□□ -1.57
VPS29-202ENST00000447578 OBP2AQ9NY56 170 aa5.24□□□□□ -1.57
VPS29-202ENST00000447578 MSRAQ9UJ68 235 aa5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms