RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 MBLAC1A4D2B0 266 aaPredicted RBP14.89□□□□□ -0.03
PTPRF-202ENST00000372405 RRN3P2A6NIE6 340 aa14.89□□□□□ -0.03
PTPRF-202ENST00000372405 HLA-DRAP01903 254 aa14.89□□□□□ -0.03
PTPRF-202ENST00000372405 CPT1AP50416 773 aa14.89□□□□□ -0.03
PTPRF-202ENST00000372405 PRKCZQ05513 592 aa14.89□□□□□ -0.03
PTPRF-202ENST00000372405 TRIM32Q13049 653 aa14.89□□□□□ -0.03
PTPRF-202ENST00000372405 NAA30Q147X3 362 aaPredicted RBP14.89□□□□□ -0.03
PTPRF-202ENST00000372405 ZNF568Q3ZCX4 644 aa14.89□□□□□ -0.03
PTPRF-202ENST00000372405 TMEM192Q8IY95 271 aa14.89□□□□□ -0.03
PTPRF-202ENST00000372405 SHC3Q92529 594 aa14.89□□□□□ -0.03
PTPRF-202ENST00000372405 NT5C1BQ96P26 610 aa14.89□□□□□ -0.03
PTPRF-202ENST00000372405 NRCAMQ92823 1304 aa14.88□□□□□ -0.03
PTPRF-202ENST00000372405 CTAGE9A4FU28 777 aa14.88□□□□□ -0.03
PTPRF-202ENST00000372405 GPR25O00155 361 aa14.88□□□□□ -0.03
PTPRF-202ENST00000372405 MEFVO15553 781 aaPredicted RBP14.88□□□□□ -0.03
PTPRF-202ENST00000372405 SLU7O95391 586 aaKnown RBP14.88□□□□□ -0.03
PTPRF-202ENST00000372405 AKR1A1P14550 325 aa14.88□□□□□ -0.03
PTPRF-202ENST00000372405 ANXA13P27216 316 aa14.88□□□□□ -0.03
PTPRF-202ENST00000372405 PSEN2P49810 448 aa14.88□□□□□ -0.03
PTPRF-202ENST00000372405 AMPD2Q01433 879 aa14.88□□□□□ -0.03
PTPRF-202ENST00000372405 BMS1Q14692 1282 aaKnown RBP14.88□□□□□ -0.03
PTPRF-202ENST00000372405 NAB2Q15742 525 aa14.88□□□□□ -0.03
PTPRF-202ENST00000372405 FSCN1Q16658 493 aaKnown RBP14.88□□□□□ -0.03
PTPRF-202ENST00000372405 ALKBH5Q6P6C2 394 aaKnown RBP14.88□□□□□ -0.03
PTPRF-202ENST00000372405 RUFY4Q6ZNE9 571 aa14.88□□□□□ -0.03
PTPRF-202ENST00000372405 GLYCTKQ8IVS8 523 aa14.88□□□□□ -0.03
PTPRF-202ENST00000372405 FAM71AQ8IYT1 594 aa14.88□□□□□ -0.03
PTPRF-202ENST00000372405 SLC20A1Q8WUM9 679 aa14.88□□□□□ -0.03
PTPRF-202ENST00000372405 NLRP7Q8WX94 980 aa14.88□□□□□ -0.03
PTPRF-202ENST00000372405 SECISBP2LQ93073 1101 aaKnown RBP14.88□□□□□ -0.03
PTPRF-202ENST00000372405 MAP7D2Q96T17 732 aa14.88□□□□□ -0.03
PTPRF-202ENST00000372405 NAPGQ99747 312 aaPredicted RBP14.88□□□□□ -0.03
PTPRF-202ENST00000372405 AP5M1Q9H0R1 490 aa14.88□□□□□ -0.03
PTPRF-202ENST00000372405 ADAMTS10Q9H324 1103 aa14.88□□□□□ -0.03
PTPRF-202ENST00000372405 PDZD7Q9H5P4 517 aa14.88□□□□□ -0.03
PTPRF-202ENST00000372405 MOCS3O95396 460 aa14.87□□□□□ -0.03
PTPRF-202ENST00000372405 TFRCP02786 760 aaKnown RBP14.87□□□□□ -0.03
PTPRF-202ENST00000372405 MYL3P08590 195 aa14.87□□□□□ -0.03
PTPRF-202ENST00000372405 ARF4P18085 180 aaPredicted RBP14.87□□□□□ -0.03
PTPRF-202ENST00000372405 TMEM62Q0P6H9 643 aa14.87□□□□□ -0.03
PTPRF-202ENST00000372405 HSP90AA2PQ14568 343 aaPredicted RBP14.87□□□□□ -0.03
PTPRF-202ENST00000372405 DEFB115Q30KQ5 88 aa14.87□□□□□ -0.03
PTPRF-202ENST00000372405 PALB2Q86YC2 1186 aa14.87□□□□□ -0.03
PTPRF-202ENST00000372405 THNSL1Q8IYQ7 743 aa14.87□□□□□ -0.03
PTPRF-202ENST00000372405 DHX38Q92620 1227 aaKnown RBP14.87□□□□□ -0.03
PTPRF-202ENST00000372405 CPB2Q96IY4 423 aa14.87□□□□□ -0.03
PTPRF-202ENST00000372405 ARID3AQ99856 593 aa14.87□□□□□ -0.03
PTPRF-202ENST00000372405 FAM49AQ9H0Q0 323 aaPredicted RBP14.87□□□□□ -0.03
PTPRF-202ENST00000372405 ACP6Q9NPH0 428 aa14.87□□□□□ -0.03
PTPRF-202ENST00000372405 BRCA2P51587 3418 aa14.87□□□□□ -0.03
PTPRF-202ENST00000372405 ENC1O14682 589 aa14.87□□□□□ -0.03
PTPRF-202ENST00000372405 ZEB2O60315 1214 aa14.87□□□□□ -0.03
PTPRF-202ENST00000372405 TSPAN1O60635 241 aa14.87□□□□□ -0.03
PTPRF-202ENST00000372405 ZC3H11AO75152 810 aaKnown RBP eCLIP14.87□□□□□ -0.03
PTPRF-202ENST00000372405 DUSP11O75319 330 aaKnown RBP14.87□□□□□ -0.03
PTPRF-202ENST00000372405 GPR32O75388 356 aa14.87□□□□□ -0.03
PTPRF-202ENST00000372405 ATP1A1P05023 1023 aaKnown RBP14.87□□□□□ -0.03
PTPRF-202ENST00000372405 MFAP3P55082 362 aa14.87□□□□□ -0.03
PTPRF-202ENST00000372405 OSTNP61366 133 aa14.87□□□□□ -0.03
PTPRF-202ENST00000372405 ZNF200P98182 395 aaPredicted RBP14.87□□□□□ -0.03
PTPRF-202ENST00000372405 PURAQ00577 322 aaKnown RBP14.87□□□□□ -0.03
PTPRF-202ENST00000372405 BIRC3Q13489 604 aa14.87□□□□□ -0.03
PTPRF-202ENST00000372405 KIZQ2M2Z5 673 aa14.87□□□□□ -0.03
PTPRF-202ENST00000372405 SPOPLQ6IQ16 392 aa14.87□□□□□ -0.03
PTPRF-202ENST00000372405 VTI1AQ96AJ9 217 aa14.87□□□□□ -0.03
PTPRF-202ENST00000372405 CDHR5Q9HBB8 845 aa14.87□□□□□ -0.03
PTPRF-202ENST00000372405 APOBEC3GQ9HC16 384 aaKnown RBP14.87□□□□□ -0.03
PTPRF-202ENST00000372405 SCN10AQ9Y5Y9 1956 aa14.87□□□□□ -0.03
PTPRF-202ENST00000372405 DYNC1I1O14576 645 aa14.86□□□□□ -0.03
PTPRF-202ENST00000372405 SGPL1O95470 568 aa14.86□□□□□ -0.03
PTPRF-202ENST00000372405 FGFR4P22455 802 aa14.86□□□□□ -0.03
PTPRF-202ENST00000372405 PIK3CAP42336 1068 aa14.86□□□□□ -0.03
PTPRF-202ENST00000372405 GCNT1Q02742 428 aa14.86□□□□□ -0.03
PTPRF-202ENST00000372405 ZNF410Q86VK4 478 aa14.86□□□□□ -0.03
PTPRF-202ENST00000372405 WDR49Q8IV35 697 aa14.86□□□□□ -0.03
PTPRF-202ENST00000372405 FMNL3Q8IVF7 1028 aa14.86□□□□□ -0.03
PTPRF-202ENST00000372405 EFCAB13Q8IY85 973 aa14.86□□□□□ -0.03
PTPRF-202ENST00000372405 MTMR12Q9C0I1 747 aa14.86□□□□□ -0.03
PTPRF-202ENST00000372405 HDAC6Q9UBN7 1215 aa14.86□□□□□ -0.03
PTPRF-202ENST00000372405 NOCTQ9UK39 431 aaKnown RBP14.86□□□□□ -0.03
PTPRF-202ENST00000372405 SMIM35A0A1B0GVV1 85 aa14.85□□□□□ -0.03
PTPRF-202ENST00000372405 CYP26A1O43174 497 aa14.85□□□□□ -0.03
PTPRF-202ENST00000372405 TREHO43280 583 aa14.85□□□□□ -0.03
PTPRF-202ENST00000372405 BUB1O43683 1085 aa14.85□□□□□ -0.03
PTPRF-202ENST00000372405 CCDC172P0C7W6 258 aa14.85□□□□□ -0.03
PTPRF-202ENST00000372405 CYP2C9P11712 490 aa14.85□□□□□ -0.03
PTPRF-202ENST00000372405 HOXC8P31273 242 aa14.85□□□□□ -0.03
PTPRF-202ENST00000372405 USP8P40818 1118 aa14.85□□□□□ -0.03
PTPRF-202ENST00000372405 TMEM132AQ24JP5 1023 aa14.85□□□□□ -0.03
PTPRF-202ENST00000372405 C10orf76Q5T2E6 689 aa14.85□□□□□ -0.03
PTPRF-202ENST00000372405 NOP9Q86U38 636 aaKnown RBP14.85□□□□□ -0.03
PTPRF-202ENST00000372405 SLC47A2Q86VL8 602 aa14.85□□□□□ -0.03
PTPRF-202ENST00000372405 VPS36Q86VN1 386 aa14.85□□□□□ -0.03
PTPRF-202ENST00000372405 EPS8L1Q8TE68 723 aa14.85□□□□□ -0.03
PTPRF-202ENST00000372405 U2AF1L4Q8WU68 220 aaKnown RBP14.85□□□□□ -0.03
PTPRF-202ENST00000372405 FAM212AQ96EL1 285 aa14.85□□□□□ -0.03
PTPRF-202ENST00000372405 AGPAT1Q99943 283 aa14.85□□□□□ -0.03
PTPRF-202ENST00000372405 CARD6Q9BX69 1037 aa14.85□□□□□ -0.03
PTPRF-202ENST00000372405 RNF186Q9NXI6 227 aa14.85□□□□□ -0.03
PTPRF-202ENST00000372405 TAS2R14Q9NYV8 317 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms