RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 OSBPL8Q9BZF1 889 aa20.45■□□□□ 0.86
USP48-201ENST00000308271 IRAK4Q9NWZ3 460 aa20.45■□□□□ 0.86
USP48-201ENST00000308271 PDP2Q9P2J9 529 aa20.45■□□□□ 0.86
USP48-201ENST00000308271 FGFR2P21802 821 aa20.45■□□□□ 0.86
USP48-201ENST00000308271 GJB7Q6PEY0 223 aa20.45■□□□□ 0.86
USP48-201ENST00000308271 C16orf86Q6ZW13 317 aa20.45■□□□□ 0.86
USP48-201ENST00000308271 CCNYQ8ND76 341 aa20.45■□□□□ 0.86
USP48-201ENST00000308271 PGM2Q96G03 612 aa20.45■□□□□ 0.86
USP48-201ENST00000308271 NSL1Q96IY1 281 aa20.45■□□□□ 0.86
USP48-201ENST00000308271 KIF9Q9HAQ2 790 aa20.45■□□□□ 0.86
USP48-201ENST00000308271 GTF3C4Q9UKN8 822 aa20.45■□□□□ 0.86
USP48-201ENST00000308271 KRT3P12035 628 aa20.44■□□□□ 0.86
USP48-201ENST00000308271 TARSP26639 723 aaKnown RBP20.44■□□□□ 0.86
USP48-201ENST00000308271 SPDYCQ5MJ68 293 aa20.44■□□□□ 0.86
USP48-201ENST00000308271 FBXO33Q7Z6M2 555 aa20.44■□□□□ 0.86
USP48-201ENST00000308271 MARCH10Q8NA82 808 aaPredicted RBP20.44■□□□□ 0.86
USP48-201ENST00000308271 SLC30A5Q8TAD4 765 aa20.44■□□□□ 0.86
USP48-201ENST00000308271 ZNF277Q9NRM2 450 aaPredicted RBP20.44■□□□□ 0.86
USP48-201ENST00000308271 NARFQ9UHQ1 456 aa20.44■□□□□ 0.86
USP48-201ENST00000308271 PCDHGC5Q9Y5F6 944 aa20.44■□□□□ 0.86
USP48-201ENST00000308271 TCHHQ07283 1943 aa20.44■□□□□ 0.86
USP48-201ENST00000308271 GH2P01242 217 aa20.44■□□□□ 0.86
USP48-201ENST00000308271 MRPS9P82933 396 aaKnown RBP20.44■□□□□ 0.86
USP48-201ENST00000308271 KDSRQ06136 332 aa20.44■□□□□ 0.86
USP48-201ENST00000308271 TFDP1Q14186 410 aa20.44■□□□□ 0.86
USP48-201ENST00000308271 ANKMY2Q8IV38 441 aa20.44■□□□□ 0.86
USP48-201ENST00000308271 DCLRE1BQ9H816 532 aa20.44■□□□□ 0.86
USP48-201ENST00000308271 WHRNQ9P202 907 aa20.44■□□□□ 0.86
USP48-201ENST00000308271 GOLGA8RI6L899 631 aa20.44■□□□□ 0.86
USP48-201ENST00000308271 ENO1P06733 434 aaKnown RBP20.44■□□□□ 0.86
USP48-201ENST00000308271 TAP1Q03518 808 aa20.44■□□□□ 0.86
USP48-201ENST00000308271 ITGB3BPQ13352 177 aaPredicted RBP20.44■□□□□ 0.86
USP48-201ENST00000308271 TNFAIP1Q13829 316 aa20.44■□□□□ 0.86
USP48-201ENST00000308271 JADE1Q6IE81 842 aa20.44■□□□□ 0.86
USP48-201ENST00000308271 KIRREL3Q8IZU9 778 aa20.44■□□□□ 0.86
USP48-201ENST00000308271 MTBPQ96DY7 904 aa20.44■□□□□ 0.86
USP48-201ENST00000308271 HAUS8Q9BT25 410 aa20.44■□□□□ 0.86
USP48-201ENST00000308271 SLC9A2Q9UBY0 812 aa20.44■□□□□ 0.86
USP48-201ENST00000308271 PHTF1Q9UMS5 762 aa20.44■□□□□ 0.86
USP48-201ENST00000308271 TMEM131LA2VDJ0 1609 aa20.44■□□□□ 0.86
USP48-201ENST00000308271 SLC37A4O43826 429 aa20.44■□□□□ 0.86
USP48-201ENST00000308271 KCNMA1Q12791 1236 aa20.44■□□□□ 0.86
USP48-201ENST00000308271 PRPSAP1Q14558 356 aa20.44■□□□□ 0.86
USP48-201ENST00000308271 LVRNQ6Q4G3 990 aa20.44■□□□□ 0.86
USP48-201ENST00000308271 BZW1Q7L1Q6 419 aaKnown RBP20.44■□□□□ 0.86
USP48-201ENST00000308271 TRIM33Q9UPN9 1127 aa20.44■□□□□ 0.86
USP48-201ENST00000308271 DIP2BQ9P265 1576 aa20.44■□□□□ 0.86
USP48-201ENST00000308271 CCDC195A0A1B0GUA6 201 aa20.43■□□□□ 0.86
USP48-201ENST00000308271 ITGA4P13612 1032 aa20.43■□□□□ 0.86
USP48-201ENST00000308271 NAIF1Q69YI7 327 aaPredicted RBP20.43■□□□□ 0.86
USP48-201ENST00000308271 TATDN2Q93075 761 aa20.43■□□□□ 0.86
USP48-201ENST00000308271 SLC13A1Q9BZW2 595 aa20.43■□□□□ 0.86
USP48-201ENST00000308271 AS3MTQ9HBK9 375 aa20.43■□□□□ 0.86
USP48-201ENST00000308271 ANLNQ9NQW6 1124 aa20.43■□□□□ 0.86
USP48-201ENST00000308271 CLTCQ00610 1675 aaKnown RBP20.43■□□□□ 0.86
USP48-201ENST00000308271 KPNA7A9QM74 516 aa20.43■□□□□ 0.86
USP48-201ENST00000308271 EIF2AK2P19525 551 aaKnown RBP20.43■□□□□ 0.86
USP48-201ENST00000308271 IFRD2Q12894 506 aaPredicted RBP20.43■□□□□ 0.86
USP48-201ENST00000308271 RARS2Q5T160 578 aaKnown RBP20.43■□□□□ 0.86
USP48-201ENST00000308271 SPOPLQ6IQ16 392 aa20.43■□□□□ 0.86
USP48-201ENST00000308271 ASNSD1Q9NWL6 643 aa20.43■□□□□ 0.86
USP48-201ENST00000308271 HSPBP1Q9NZL4 362 aa20.43■□□□□ 0.86
USP48-201ENST00000308271 CYP4F11Q9HBI6 524 aa20.43■□□□□ 0.86
USP48-201ENST00000308271 MAGEA13PA6NCF6 341 aa20.43■□□□□ 0.86
USP48-201ENST00000308271 RPS6KA4O75676 772 aa20.43■□□□□ 0.86
USP48-201ENST00000308271 MTMR1Q13613 665 aa20.43■□□□□ 0.86
USP48-201ENST00000308271 ZNF394Q53GI3 561 aa20.43■□□□□ 0.86
USP48-201ENST00000308271 ATXN2LQ8WWM7 1075 aaKnown RBP20.43■□□□□ 0.86
USP48-201ENST00000308271 CDC42EP4Q9H3Q1 356 aaKnown RBP20.43■□□□□ 0.86
USP48-201ENST00000308271 SEMA4AQ9H3S1 761 aa20.43■□□□□ 0.86
USP48-201ENST00000308271 ATXN2Q99700 1313 aaKnown RBP20.42■□□□□ 0.86
USP48-201ENST00000308271 B2RBV5 119 aa20.42■□□□□ 0.86
USP48-201ENST00000308271 HSPA8P11142 646 aaKnown RBP20.42■□□□□ 0.86
USP48-201ENST00000308271 KPNB1Q14974 876 aaKnown RBP20.42■□□□□ 0.86
USP48-201ENST00000308271 GFM2Q969S9 779 aaKnown RBP20.42■□□□□ 0.86
USP48-201ENST00000308271 CENPTQ96BT3 561 aa20.42■□□□□ 0.86
USP48-201ENST00000308271 MRPL40Q9NQ50 206 aaKnown RBP20.42■□□□□ 0.86
USP48-201ENST00000308271 SIK3Q9Y2K2 1263 aa20.42■□□□□ 0.86
USP48-201ENST00000308271 CEP55Q53EZ4 464 aa20.42■□□□□ 0.86
USP48-201ENST00000308271 CATSPER1Q8NEC5 780 aa20.42■□□□□ 0.86
USP48-201ENST00000308271 NGRNQ9NPE2 291 aaKnown RBP20.42■□□□□ 0.86
USP48-201ENST00000308271 CCND2P30279 289 aa20.42■□□□□ 0.86
USP48-201ENST00000308271 SCARA5Q6ZMJ2 495 aa20.42■□□□□ 0.86
USP48-201ENST00000308271 CCDC124Q96CT7 223 aaKnown RBP20.42■□□□□ 0.86
USP48-201ENST00000308271 ZBTB10Q96DT7 871 aa20.42■□□□□ 0.86
USP48-201ENST00000308271 HAO1Q9UJM8 370 aa20.42■□□□□ 0.86
USP48-201ENST00000308271 RCCD1A6NED2 376 aa20.41■□□□□ 0.86
USP48-201ENST00000308271 ABL1P00519 1130 aa20.41■□□□□ 0.86
USP48-201ENST00000308271 KRT76Q01546 638 aa20.41■□□□□ 0.86
USP48-201ENST00000308271 ACAD11Q709F0 780 aa20.41■□□□□ 0.86
USP48-201ENST00000308271 NRBF2Q96F24 287 aa20.41■□□□□ 0.86
USP48-201ENST00000308271 TMEM117Q9H0C3 514 aa20.41■□□□□ 0.86
USP48-201ENST00000308271 REXO2Q9Y3B8 237 aaKnown RBP20.41■□□□□ 0.86
USP48-201ENST00000308271 FLT1P17948 1338 aa20.41■□□□□ 0.86
USP48-201ENST00000308271 JCADQ9P266 1359 aa20.41■□□□□ 0.86
USP48-201ENST00000308271 INO80B-WBP1J3KQ70 363 aa20.41■□□□□ 0.86
USP48-201ENST00000308271 KRT10P13645 584 aa20.41■□□□□ 0.86
USP48-201ENST00000308271 ELF3P78545 371 aaPredicted RBP20.41■□□□□ 0.86
USP48-201ENST00000308271 ADAM33Q9BZ11 813 aa20.41■□□□□ 0.86
USP48-201ENST00000308271 INO80BQ9C086 356 aaPredicted RBP20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 265.3 ms