RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 ITGA4P13612 1032 aa16.39■□□□□ 0.21
TRIM28-207ENST00000597136 PROZP22891 400 aa16.39■□□□□ 0.21
TRIM28-207ENST00000597136 HOXD13P35453 343 aa16.39■□□□□ 0.21
TRIM28-207ENST00000597136 STIM1Q13586 685 aa16.39■□□□□ 0.21
TRIM28-207ENST00000597136 SEZ6Q53EL9 994 aa16.39■□□□□ 0.21
TRIM28-207ENST00000597136 TMEM192Q8IY95 271 aa16.39■□□□□ 0.21
TRIM28-207ENST00000597136 TCHPQ9BT92 498 aa16.39■□□□□ 0.21
TRIM28-207ENST00000597136 CDT1Q9H211 546 aa16.39■□□□□ 0.21
TRIM28-207ENST00000597136 TYW1Q9NV66 732 aaKnown RBP16.39■□□□□ 0.21
TRIM28-207ENST00000597136 SNTG2Q9NY99 539 aa16.39■□□□□ 0.21
TRIM28-207ENST00000597136 KLK14Q9P0G3 267 aa16.39■□□□□ 0.21
TRIM28-207ENST00000597136 DACH1Q9UI36 760 aa16.39■□□□□ 0.21
TRIM28-207ENST00000597136 MRPL42Q9Y6G3 142 aaKnown RBP16.39■□□□□ 0.21
TRIM28-207ENST00000597136 COL6A3P12111 3177 aa16.39■□□□□ 0.21
TRIM28-207ENST00000597136 SCN1AP35498 2009 aa16.39■□□□□ 0.21
TRIM28-207ENST00000597136 EPOPA6NHQ4 379 aa16.38■□□□□ 0.21
TRIM28-207ENST00000597136 H0YCG3 227 aa16.38■□□□□ 0.21
TRIM28-207ENST00000597136 EIF3DO15371 548 aaKnown RBP eCLIP16.38■□□□□ 0.21
TRIM28-207ENST00000597136 HARSP12081 509 aaKnown RBP16.38■□□□□ 0.21
TRIM28-207ENST00000597136 PPP1R2P41236 205 aa16.38■□□□□ 0.21
TRIM28-207ENST00000597136 OSTNP61366 133 aa16.38■□□□□ 0.21
TRIM28-207ENST00000597136 ALCAMQ13740 583 aa16.38■□□□□ 0.21
TRIM28-207ENST00000597136 GRIN2CQ14957 1233 aa16.38■□□□□ 0.21
TRIM28-207ENST00000597136 BMT2Q1RMZ1 405 aa16.38■□□□□ 0.21
TRIM28-207ENST00000597136 CT47A1Q5JQC4 288 aaPredicted RBP16.38■□□□□ 0.21
TRIM28-207ENST00000597136 KLHL10Q6JEL2 608 aa16.38■□□□□ 0.21
TRIM28-207ENST00000597136 STXBP4Q6ZWJ1 553 aa16.38■□□□□ 0.21
TRIM28-207ENST00000597136 GAS2L3Q86XJ1 694 aa16.38■□□□□ 0.21
TRIM28-207ENST00000597136 CMTR2Q8IYT2 770 aaKnown RBP16.38■□□□□ 0.21
TRIM28-207ENST00000597136 FIBCD1Q8N539 461 aa16.38■□□□□ 0.21
TRIM28-207ENST00000597136 ZNF507Q8TCN5 953 aa16.38■□□□□ 0.21
TRIM28-207ENST00000597136 PGBD4Q96DM1 585 aa16.38■□□□□ 0.21
TRIM28-207ENST00000597136 BICD1Q96G01 975 aa16.38■□□□□ 0.21
TRIM28-207ENST00000597136 NAT10Q9H0A0 1025 aaKnown RBP16.38■□□□□ 0.21
TRIM28-207ENST00000597136 TMEM117Q9H0C3 514 aa16.38■□□□□ 0.21
TRIM28-207ENST00000597136 INPP5FQ9Y2H2 1132 aa16.38■□□□□ 0.21
TRIM28-207ENST00000597136 KIF20AO95235 890 aa16.38■□□□□ 0.21
TRIM28-207ENST00000597136 CAVIN2O95810 425 aa16.38■□□□□ 0.21
TRIM28-207ENST00000597136 SCP2P22307 547 aa16.38■□□□□ 0.21
TRIM28-207ENST00000597136 ZNF568Q3ZCX4 644 aa16.38■□□□□ 0.21
TRIM28-207ENST00000597136 MPZL3Q6UWV2 235 aa16.38■□□□□ 0.21
TRIM28-207ENST00000597136 ZPBP2Q6X784 338 aa16.38■□□□□ 0.21
TRIM28-207ENST00000597136 MAP4K3Q8IVH8 894 aa16.38■□□□□ 0.21
TRIM28-207ENST00000597136 DEFB123Q8N688 67 aa16.38■□□□□ 0.21
TRIM28-207ENST00000597136 DHTKD1Q96HY7 919 aaPredicted RBP16.38■□□□□ 0.21
TRIM28-207ENST00000597136 ZFP42Q96MM3 310 aa16.38■□□□□ 0.21
TRIM28-207ENST00000597136 GAD1Q99259 594 aa16.38■□□□□ 0.21
TRIM28-207ENST00000597136 ADPGKQ9BRR6 497 aa16.38■□□□□ 0.21
TRIM28-207ENST00000597136 CWH43Q9H720 699 aa16.38■□□□□ 0.21
TRIM28-207ENST00000597136 RSAD1Q9HA92 442 aa16.38■□□□□ 0.21
TRIM28-207ENST00000597136 RNF216Q9NWF9 866 aaPredicted RBP16.38■□□□□ 0.21
TRIM28-207ENST00000597136 ANKFY1Q9P2R3 1169 aa16.38■□□□□ 0.21
TRIM28-207ENST00000597136 PARP2Q9UGN5 583 aa16.38■□□□□ 0.21
TRIM28-207ENST00000597136 PSMA7O14818 248 aa16.37■□□□□ 0.21
TRIM28-207ENST00000597136 HNRNPDLO14979 420 aaKnown RBP16.37■□□□□ 0.21
TRIM28-207ENST00000597136 B4GALT3O60512 393 aa16.37■□□□□ 0.21
TRIM28-207ENST00000597136 TOM1L1O75674 476 aa16.37■□□□□ 0.21
TRIM28-207ENST00000597136 PIGRP01833 764 aa16.37■□□□□ 0.21
TRIM28-207ENST00000597136 ERCC5P28715 1186 aaPredicted RBP16.37■□□□□ 0.21
TRIM28-207ENST00000597136 ZNF165P49910 485 aa16.37■□□□□ 0.21
TRIM28-207ENST00000597136 LIG4P49917 911 aa16.37■□□□□ 0.21
TRIM28-207ENST00000597136 ERVK-21P61565 698 aa16.37■□□□□ 0.21
TRIM28-207ENST00000597136 L1TD1Q5T7N2 865 aaKnown RBP16.37■□□□□ 0.21
TRIM28-207ENST00000597136 ZNF697Q5TEC3 545 aa16.37■□□□□ 0.21
TRIM28-207ENST00000597136 GPR153Q6NV75 609 aa16.37■□□□□ 0.21
TRIM28-207ENST00000597136 NELFCDQ8IXH7 590 aa16.37■□□□□ 0.21
TRIM28-207ENST00000597136 THNSL1Q8IYQ7 743 aa16.37■□□□□ 0.21
TRIM28-207ENST00000597136 ABI1Q8IZP0 508 aa16.37■□□□□ 0.21
TRIM28-207ENST00000597136 GSTCDQ8NEC7 633 aa16.37■□□□□ 0.21
TRIM28-207ENST00000597136 NELFBQ8WX92 580 aa16.37■□□□□ 0.21
TRIM28-207ENST00000597136 ARNTL2Q8WYA1 636 aa16.37■□□□□ 0.21
TRIM28-207ENST00000597136 CTNND2Q9UQB3 1225 aa16.37■□□□□ 0.21
TRIM28-207ENST00000597136 UBE4BO95155 1302 aa16.37■□□□□ 0.21
TRIM28-207ENST00000597136 VWA8A3KMH1 1905 aa16.36■□□□□ 0.21
TRIM28-207ENST00000597136 ARL5CA6NH57 179 aa16.36■□□□□ 0.21
TRIM28-207ENST00000597136 CLDN3O15551 220 aa16.36■□□□□ 0.21
TRIM28-207ENST00000597136 MEFVO15553 781 aaPredicted RBP16.36■□□□□ 0.21
TRIM28-207ENST00000597136 HOXA2O43364 376 aa16.36■□□□□ 0.21
TRIM28-207ENST00000597136 POMCP01189 267 aa16.36■□□□□ 0.21
TRIM28-207ENST00000597136 ABCD1P33897 745 aa16.36■□□□□ 0.21
TRIM28-207ENST00000597136 MLH1P40692 756 aa16.36■□□□□ 0.21
TRIM28-207ENST00000597136 MATR3P43243 847 aaKnown RBP eCLIP16.36■□□□□ 0.21
TRIM28-207ENST00000597136 PAK1Q13153 545 aa16.36■□□□□ 0.21
TRIM28-207ENST00000597136 KNOP1Q1ED39 458 aaKnown RBP16.36■□□□□ 0.21
TRIM28-207ENST00000597136 NOMO2Q5JPE7 1267 aa16.36■□□□□ 0.21
TRIM28-207ENST00000597136 ZBTB41Q5SVQ8 909 aa16.36■□□□□ 0.21
TRIM28-207ENST00000597136 CENPPQ6IPU0 288 aa16.36■□□□□ 0.21
TRIM28-207ENST00000597136 GLB1LQ6UWU2 654 aa16.36■□□□□ 0.21
TRIM28-207ENST00000597136 ZNF280BQ86YH2 543 aa16.36■□□□□ 0.21
TRIM28-207ENST00000597136 ZSWIM2Q8NEG5 633 aa16.36■□□□□ 0.21
TRIM28-207ENST00000597136 CLP1Q92989 425 aaKnown RBP16.36■□□□□ 0.21
TRIM28-207ENST00000597136 HVCN1Q96D96 273 aa16.36■□□□□ 0.21
TRIM28-207ENST00000597136 ACCSQ96QU6 501 aa16.36■□□□□ 0.21
TRIM28-207ENST00000597136 MED15Q96RN5 788 aa16.36■□□□□ 0.21
TRIM28-207ENST00000597136 TGS1Q96RS0 853 aaKnown RBP16.36■□□□□ 0.21
TRIM28-207ENST00000597136 BPIFA3Q9BQP9 254 aa16.36■□□□□ 0.21
TRIM28-207ENST00000597136 KCTD10Q9H3F6 313 aa16.36■□□□□ 0.21
TRIM28-207ENST00000597136 PRDM12Q9H4Q4 367 aa16.36■□□□□ 0.21
TRIM28-207ENST00000597136 TBC1D13Q9NVG8 400 aa16.36■□□□□ 0.21
TRIM28-207ENST00000597136 PLAGL2Q9UPG8 496 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms