RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 CCDC149Q6ZUS6 474 aa5.94□□□□□ -1.46
LINC00560-201ENST00000564593 C3orf20Q8ND61 904 aa5.94□□□□□ -1.46
LINC00560-201ENST00000564593 REPS2Q8NFH8 660 aa5.94□□□□□ -1.46
LINC00560-201ENST00000564593 PJA1Q8NG27 643 aa5.94□□□□□ -1.46
LINC00560-201ENST00000564593 OR5M3Q8NGP4 307 aa5.94□□□□□ -1.46
LINC00560-201ENST00000564593 TMX3Q96JJ7 454 aa5.94□□□□□ -1.46
LINC00560-201ENST00000564593 CDC5LQ99459 802 aaKnown RBP5.94□□□□□ -1.46
LINC00560-201ENST00000564593 LRFN3Q9BTN0 628 aa5.94□□□□□ -1.46
LINC00560-201ENST00000564593 SENP6Q9GZR1 1112 aaPredicted RBP5.94□□□□□ -1.46
LINC00560-201ENST00000564593 DDX21Q9NR30 783 aaKnown RBP eCLIP5.94□□□□□ -1.46
LINC00560-201ENST00000564593 STXBP5LQ9Y2K9 1186 aa5.94□□□□□ -1.46
LINC00560-201ENST00000564593 NR2E3Q9Y5X4 410 aa5.94□□□□□ -1.46
LINC00560-201ENST00000564593 MYBBP1AQ9BQG0 1328 aaKnown RBP5.94□□□□□ -1.46
LINC00560-201ENST00000564593 LRRC14BA6NHZ5 514 aa5.93□□□□□ -1.46
LINC00560-201ENST00000564593 NOBOXO60393 691 aa5.93□□□□□ -1.46
LINC00560-201ENST00000564593 PEX14O75381 377 aa5.93□□□□□ -1.46
LINC00560-201ENST00000564593 ZBED1O96006 694 aa5.93□□□□□ -1.46
LINC00560-201ENST00000564593 NBPF7P0C2Y1 421 aaPredicted RBP5.93□□□□□ -1.46
LINC00560-201ENST00000564593 RHCEP18577 417 aa5.93□□□□□ -1.46
LINC00560-201ENST00000564593 CASRP41180 1078 aa5.93□□□□□ -1.46
LINC00560-201ENST00000564593 RHDQ02161 417 aa5.93□□□□□ -1.46
LINC00560-201ENST00000564593 UBE4AQ14139 1066 aa5.93□□□□□ -1.46
LINC00560-201ENST00000564593 SAFBQ15424 915 aaKnown RBP eCLIP5.93□□□□□ -1.46
LINC00560-201ENST00000564593 CYB5RLQ6IPT4 315 aa5.93□□□□□ -1.46
LINC00560-201ENST00000564593 BORAQ6PGQ7 559 aa5.93□□□□□ -1.46
LINC00560-201ENST00000564593 NPNTQ6UXI9 565 aa5.93□□□□□ -1.46
LINC00560-201ENST00000564593 DAAM2Q86T65 1068 aa5.93□□□□□ -1.46
LINC00560-201ENST00000564593 TRMT2AQ8IZ69 625 aaKnown RBP5.93□□□□□ -1.46
LINC00560-201ENST00000564593 CMTM4Q8IZR5 234 aa5.93□□□□□ -1.46
LINC00560-201ENST00000564593 FAM156AQ8NDB6 213 aa5.93□□□□□ -1.46
LINC00560-201ENST00000564593 FBXO18Q8NFZ0 1043 aa5.93□□□□□ -1.46
LINC00560-201ENST00000564593 KLHDC4Q8TBB5 520 aa5.93□□□□□ -1.46
LINC00560-201ENST00000564593 STON2Q8WXE9 905 aa5.93□□□□□ -1.46
LINC00560-201ENST00000564593 RABGGTAQ92696 567 aa5.93□□□□□ -1.46
LINC00560-201ENST00000564593 CDK5RAP3Q96JB5 506 aa5.93□□□□□ -1.46
LINC00560-201ENST00000564593 DMRTA2Q96SC8 542 aa5.93□□□□□ -1.46
LINC00560-201ENST00000564593 GPHA2Q96T91 129 aa5.93□□□□□ -1.46
LINC00560-201ENST00000564593 VRK1Q99986 396 aaPredicted RBP5.93□□□□□ -1.46
LINC00560-201ENST00000564593 B3GNT5Q9BYG0 378 aa5.93□□□□□ -1.46
LINC00560-201ENST00000564593 TMEM140Q9NV12 185 aa5.93□□□□□ -1.46
LINC00560-201ENST00000564593 PUF60Q9UHX1 559 aaKnown RBP5.93□□□□□ -1.46
LINC00560-201ENST00000564593 AJAP1Q9UKB5 411 aaPredicted RBP5.93□□□□□ -1.46
LINC00560-201ENST00000564593 SLC4A7Q9Y6M7 1214 aa5.93□□□□□ -1.46
LINC00560-201ENST00000564593 B4GALT3O60512 393 aa5.93□□□□□ -1.46
LINC00560-201ENST00000564593 GPR32O75388 356 aa5.93□□□□□ -1.46
LINC00560-201ENST00000564593 AMY1AP04745 511 aa5.93□□□□□ -1.46
LINC00560-201ENST00000564593 DDCP20711 480 aa5.93□□□□□ -1.46
LINC00560-201ENST00000564593 HK3P52790 923 aa5.93□□□□□ -1.46
LINC00560-201ENST00000564593 ADAM8P78325 824 aa5.93□□□□□ -1.46
LINC00560-201ENST00000564593 NOGQ13253 232 aa5.93□□□□□ -1.46
LINC00560-201ENST00000564593 RAB39AQ14964 217 aa5.93□□□□□ -1.46
LINC00560-201ENST00000564593 ANO6Q4KMQ2 910 aa5.93□□□□□ -1.46
LINC00560-201ENST00000564593 KHDC1Q4VXA5 237 aaKnown RBP5.93□□□□□ -1.46
LINC00560-201ENST00000564593 PRAMEF14Q5SWL7 426 aa5.93□□□□□ -1.46
LINC00560-201ENST00000564593 SYCP2LQ5T4T6 812 aa5.93□□□□□ -1.46
LINC00560-201ENST00000564593 NT5DC1Q5TFE4 455 aa5.93□□□□□ -1.46
LINC00560-201ENST00000564593 GADL1Q6ZQY3 521 aa5.93□□□□□ -1.46
LINC00560-201ENST00000564593 PDZD4Q76G19 769 aaPredicted RBP5.93□□□□□ -1.46
LINC00560-201ENST00000564593 KIAA0319LQ8IZA0 1049 aa5.93□□□□□ -1.46
LINC00560-201ENST00000564593 FAM43AQ8N2R8 423 aa5.93□□□□□ -1.46
LINC00560-201ENST00000564593 MDM1Q8TC05 714 aa5.93□□□□□ -1.46
LINC00560-201ENST00000564593 MRGPRX4Q96LA9 322 aa5.93□□□□□ -1.46
LINC00560-201ENST00000564593 C12orf65Q9H3J6 166 aaKnown RBP5.93□□□□□ -1.46
LINC00560-201ENST00000564593 PCDHA3Q9Y5H8 950 aa5.93□□□□□ -1.46
LINC00560-201ENST00000564593 APAF1O14727 1248 aa5.92□□□□□ -1.46
LINC00560-201ENST00000564593 SLC26A4O43511 780 aa5.92□□□□□ -1.46
LINC00560-201ENST00000564593 SASH1O94885 1247 aa5.92□□□□□ -1.46
LINC00560-201ENST00000564593 HRGP04196 525 aa5.92□□□□□ -1.46
LINC00560-201ENST00000564593 IL2RBP14784 551 aa5.92□□□□□ -1.46
LINC00560-201ENST00000564593 GUCY1A2P33402 732 aa5.92□□□□□ -1.46
LINC00560-201ENST00000564593 AGFG1P52594 562 aaKnown RBP5.92□□□□□ -1.46
LINC00560-201ENST00000564593 NPEPPSP55786 919 aa5.92□□□□□ -1.46
LINC00560-201ENST00000564593 RHBDL3P58872 404 aa5.92□□□□□ -1.46
LINC00560-201ENST00000564593 RAC3P60763 192 aa5.92□□□□□ -1.46
LINC00560-201ENST00000564593 KIAA0753Q2KHM9 967 aa5.92□□□□□ -1.46
LINC00560-201ENST00000564593 ZGPATQ8N5A5 531 aaKnown RBP5.92□□□□□ -1.46
LINC00560-201ENST00000564593 CFHR4Q92496 578 aa5.92□□□□□ -1.46
LINC00560-201ENST00000564593 SAMD11Q96NU1 681 aa5.92□□□□□ -1.46
LINC00560-201ENST00000564593 ARMT1Q9H993 441 aa5.92□□□□□ -1.46
LINC00560-201ENST00000564593 IL23AQ9NPF7 189 aa5.92□□□□□ -1.46
LINC00560-201ENST00000564593 CHST12Q9NRB3 414 aa5.92□□□□□ -1.46
LINC00560-201ENST00000564593 LMBRD1Q9NUN5 540 aa5.92□□□□□ -1.46
LINC00560-201ENST00000564593 CALCOCO1Q9P1Z2 691 aa5.92□□□□□ -1.46
LINC00560-201ENST00000564593 USP25Q9UHP3 1055 aa5.92□□□□□ -1.46
LINC00560-201ENST00000564593 L1RE1Q9UN81 338 aa5.92□□□□□ -1.46
LINC00560-201ENST00000564593 H3BUI4 141 aa5.91□□□□□ -1.46
LINC00560-201ENST00000564593 ARIH2O95376 493 aa5.91□□□□□ -1.46
LINC00560-201ENST00000564593 PHKG2P15735 406 aa5.91□□□□□ -1.46
LINC00560-201ENST00000564593 HOXA5P20719 270 aa5.91□□□□□ -1.46
LINC00560-201ENST00000564593 APBA1Q02410 837 aa5.91□□□□□ -1.46
LINC00560-201ENST00000564593 PICALMQ13492 652 aa5.91□□□□□ -1.46
LINC00560-201ENST00000564593 SAFB2Q14151 953 aaKnown RBP eCLIP5.91□□□□□ -1.46
LINC00560-201ENST00000564593 DARS2Q6PI48 645 aaKnown RBP5.91□□□□□ -1.46
LINC00560-201ENST00000564593 HEATR3Q7Z4Q2 680 aa5.91□□□□□ -1.46
LINC00560-201ENST00000564593 PLEKHH3Q7Z736 793 aa5.91□□□□□ -1.46
LINC00560-201ENST00000564593 LGI4Q8N135 537 aa5.91□□□□□ -1.46
LINC00560-201ENST00000564593 SH2D3CQ8N5H7 860 aa5.91□□□□□ -1.46
LINC00560-201ENST00000564593 IFI44Q8TCB0 444 aa5.91□□□□□ -1.46
LINC00560-201ENST00000564593 A0A088AWK7 358 aa5.9□□□□□ -1.46
LINC00560-201ENST00000564593 UBE2QL1A1L167 161 aa5.9□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms