RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 ATP1A1P05023 1023 aaKnown RBP18.2■□□□□ 0.5
LDLR-206ENST00000557958 IRX5P78411 483 aaPredicted RBP18.2■□□□□ 0.5
LDLR-206ENST00000557958 MAP2K1Q02750 393 aaPredicted RBP18.2■□□□□ 0.5
LDLR-206ENST00000557958 PSMD6Q15008 389 aa18.2■□□□□ 0.5
LDLR-206ENST00000557958 ARHGAP44Q17R89 818 aa18.2■□□□□ 0.5
LDLR-206ENST00000557958 TLK2Q86UE8 772 aa18.2■□□□□ 0.5
LDLR-206ENST00000557958 GPR161Q8N6U8 529 aaKnown RBP18.2■□□□□ 0.5
LDLR-206ENST00000557958 RABGGTAQ92696 567 aa18.2■□□□□ 0.5
LDLR-206ENST00000557958 RPGRIP1Q96KN7 1286 aa18.2■□□□□ 0.5
LDLR-206ENST00000557958 CFHR5Q9BXR6 569 aa18.2■□□□□ 0.5
LDLR-206ENST00000557958 MRPL4Q9BYD3 311 aaKnown RBP18.2■□□□□ 0.5
LDLR-206ENST00000557958 TULP1O00294 542 aaPredicted RBP18.2■□□□□ 0.5
LDLR-206ENST00000557958 ENC1O14682 589 aa18.2■□□□□ 0.5
LDLR-206ENST00000557958 ZC3H11AO75152 810 aaKnown RBP eCLIP18.2■□□□□ 0.5
LDLR-206ENST00000557958 LGALS2P05162 132 aa18.2■□□□□ 0.5
LDLR-206ENST00000557958 DLATP10515 647 aaKnown RBP18.2■□□□□ 0.5
LDLR-206ENST00000557958 GPC3P51654 580 aa18.2■□□□□ 0.5
LDLR-206ENST00000557958 ZNF484Q5JVG2 852 aa18.2■□□□□ 0.5
LDLR-206ENST00000557958 CDCA2Q69YH5 1023 aaPredicted RBP18.2■□□□□ 0.5
LDLR-206ENST00000557958 LRRN4CLQ8ND94 238 aa18.2■□□□□ 0.5
LDLR-206ENST00000557958 RAET1EQ8TD07 263 aa18.2■□□□□ 0.5
LDLR-206ENST00000557958 ZNF296Q8WUU4 475 aaPredicted RBP18.2■□□□□ 0.5
LDLR-206ENST00000557958 NT5C1BQ96P26 610 aa18.2■□□□□ 0.5
LDLR-206ENST00000557958 MSTO1Q9BUK6 570 aa18.2■□□□□ 0.5
LDLR-206ENST00000557958 CAPN6Q9Y6Q1 641 aa18.2■□□□□ 0.5
LDLR-206ENST00000557958 ASAP2O43150 1006 aa18.19■□□□□ 0.5
LDLR-206ENST00000557958 FKTNO75072 461 aa18.19■□□□□ 0.5
LDLR-206ENST00000557958 MYCNP04198 464 aaPredicted RBP18.19■□□□□ 0.5
LDLR-206ENST00000557958 PRLRP16471 622 aa18.19■□□□□ 0.5
LDLR-206ENST00000557958 IGBP1P78318 339 aa18.19■□□□□ 0.5
LDLR-206ENST00000557958 LAMTOR4Q0VGL1 99 aa18.19■□□□□ 0.5
LDLR-206ENST00000557958 MAPK6Q16659 721 aa18.19■□□□□ 0.5
LDLR-206ENST00000557958 TEX35Q5T0J7 233 aa18.19■□□□□ 0.5
LDLR-206ENST00000557958 RSRC2Q7L4I2 434 aaKnown RBP18.19■□□□□ 0.5
LDLR-206ENST00000557958 ENOSF1Q7L5Y1 443 aa18.19■□□□□ 0.5
LDLR-206ENST00000557958 TRPV1Q8NER1 839 aa18.19■□□□□ 0.5
LDLR-206ENST00000557958 PKNOX2Q96KN3 472 aa18.19■□□□□ 0.5
LDLR-206ENST00000557958 AP5M1Q9H0R1 490 aa18.19■□□□□ 0.5
LDLR-206ENST00000557958 RNPEPQ9H4A4 650 aa18.19■□□□□ 0.5
LDLR-206ENST00000557958 RAB20Q9NX57 234 aa18.19■□□□□ 0.5
LDLR-206ENST00000557958 ANKFY1Q9P2R3 1169 aa18.19■□□□□ 0.5
LDLR-206ENST00000557958 SRRDQ9UH36 339 aa18.19■□□□□ 0.5
LDLR-206ENST00000557958 GNEQ9Y223 722 aaKnown RBP18.19■□□□□ 0.5
LDLR-206ENST00000557958 MGAMO43451 1857 aa18.19■□□□□ 0.5
LDLR-206ENST00000557958 SIP14410 1827 aa18.19■□□□□ 0.5
LDLR-206ENST00000557958 PPFIA4O75335 1185 aa18.18■□□□□ 0.5
LDLR-206ENST00000557958 MMP3P08254 477 aa18.18■□□□□ 0.5
LDLR-206ENST00000557958 H2AFZP0C0S5 128 aa18.18■□□□□ 0.5
LDLR-206ENST00000557958 TCP1P17987 556 aaKnown RBP18.18■□□□□ 0.5
LDLR-206ENST00000557958 DGKDQ16760 1214 aa18.18■□□□□ 0.5
LDLR-206ENST00000557958 H2AFVQ71UI9 128 aa18.18■□□□□ 0.5
LDLR-206ENST00000557958 PPM1KQ8N3J5 372 aa18.18■□□□□ 0.5
LDLR-206ENST00000557958 TARS2Q9BW92 718 aaKnown RBP18.18■□□□□ 0.5
LDLR-206ENST00000557958 GPR88Q9GZN0 384 aa18.18■□□□□ 0.5
LDLR-206ENST00000557958 SUCLA2Q9P2R7 463 aaPredicted RBP18.18■□□□□ 0.5
LDLR-206ENST00000557958 PUF60Q9UHX1 559 aaKnown RBP18.18■□□□□ 0.5
LDLR-206ENST00000557958 A0A0B4J269 797 aa18.18■□□□□ 0.5
LDLR-206ENST00000557958 ZBTB42B2RXF5 422 aa18.18■□□□□ 0.5
LDLR-206ENST00000557958 CLDN3O15551 220 aa18.18■□□□□ 0.5
LDLR-206ENST00000557958 TOM1L1O75674 476 aa18.18■□□□□ 0.5
LDLR-206ENST00000557958 AKR1A1P14550 325 aa18.18■□□□□ 0.5
LDLR-206ENST00000557958 CLDN10P78369 228 aa18.18■□□□□ 0.5
LDLR-206ENST00000557958 BEX3Q00994 111 aa18.18■□□□□ 0.5
LDLR-206ENST00000557958 RNF149Q8NC42 400 aa18.18■□□□□ 0.5
LDLR-206ENST00000557958 TRAPPC12Q8WVT3 735 aa18.18■□□□□ 0.5
LDLR-206ENST00000557958 RBAKQ9NYW8 714 aaPredicted RBP18.18■□□□□ 0.5
LDLR-206ENST00000557958 SNX12Q9UMY4 172 aa18.18■□□□□ 0.5
LDLR-206ENST00000557958 HYOU1Q9Y4L1 999 aa18.18■□□□□ 0.5
LDLR-206ENST00000557958 COL1A2P08123 1366 aa18.17■□□□□ 0.5
LDLR-206ENST00000557958 A0A0A6YYK5 440 aaPredicted RBP18.17■□□□□ 0.5
LDLR-206ENST00000557958 FOXN3O00409 490 aaPredicted RBP18.17■□□□□ 0.5
LDLR-206ENST00000557958 MAGEB2O15479 319 aa18.17■□□□□ 0.5
LDLR-206ENST00000557958 LRRN2O75325 713 aa18.17■□□□□ 0.5
LDLR-206ENST00000557958 PNMA6AP0CW24 399 aaPredicted RBP18.17■□□□□ 0.5
LDLR-206ENST00000557958 HSPA6P17066 643 aa18.17■□□□□ 0.5
LDLR-206ENST00000557958 TNNI1P19237 187 aa18.17■□□□□ 0.5
LDLR-206ENST00000557958 TNFAIP3P21580 790 aa18.17■□□□□ 0.5
LDLR-206ENST00000557958 KLRC1P26715 233 aa18.17■□□□□ 0.5
LDLR-206ENST00000557958 CACNB2Q08289 660 aaPredicted RBP18.17■□□□□ 0.5
LDLR-206ENST00000557958 SV2AQ7L0J3 742 aa18.17■□□□□ 0.5
LDLR-206ENST00000557958 ARHGEF19Q8IW93 802 aa18.17■□□□□ 0.5
LDLR-206ENST00000557958 CAGE1Q8TC20 777 aa18.17■□□□□ 0.5
LDLR-206ENST00000557958 U2AF1L4Q8WU68 220 aaKnown RBP18.17■□□□□ 0.5
LDLR-206ENST00000557958 PPP1R13LQ8WUF5 828 aa18.17■□□□□ 0.5
LDLR-206ENST00000557958 LMBR1Q8WVP7 490 aa18.17■□□□□ 0.5
LDLR-206ENST00000557958 PCDHGC5Q9Y5F6 944 aa18.17■□□□□ 0.5
LDLR-206ENST00000557958 H3BRB1 525 aa18.16■□□□□ 0.5
LDLR-206ENST00000557958 DDX3XO00571 662 aaKnown RBP eCLIP18.16■□□□□ 0.58e-9■□□□□ 10
LDLR-206ENST00000557958 BUB1O43683 1085 aa18.16■□□□□ 0.5
LDLR-206ENST00000557958 PRKCBP05771 671 aa18.16■□□□□ 0.5
LDLR-206ENST00000557958 MYL3P08590 195 aa18.16■□□□□ 0.5
LDLR-206ENST00000557958 SRGAP2CP0DJJ0 459 aa18.16■□□□□ 0.5
LDLR-206ENST00000557958 IRF5Q13568 498 aa18.16■□□□□ 0.5
LDLR-206ENST00000557958 WDR44Q5JSH3 913 aa18.16■□□□□ 0.5
LDLR-206ENST00000557958 RHPN2Q8IUC4 686 aa18.16■□□□□ 0.5
LDLR-206ENST00000557958 LRRC71Q8N4P6 559 aa18.16■□□□□ 0.5
LDLR-206ENST00000557958 ZBTB10Q96DT7 871 aa18.16■□□□□ 0.5
LDLR-206ENST00000557958 POP1Q99575 1024 aaKnown RBP18.16■□□□□ 0.5
LDLR-206ENST00000557958 CCDC113Q9H0I3 377 aa18.16■□□□□ 0.5
LDLR-206ENST00000557958 TUT1Q9H6E5 874 aaKnown RBP18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 145.5 ms