RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 LRRC19Q9H756 370 aa14.48□□□□□ -0.09
SHMT2-222ENST00000555774 CAND2O75155 1236 aa14.48□□□□□ -0.09
SHMT2-222ENST00000555774 MMEP08473 750 aa14.48□□□□□ -0.09
SHMT2-222ENST00000555774 PYGMP11217 842 aa14.48□□□□□ -0.09
SHMT2-222ENST00000555774 RARGP13631 454 aa14.48□□□□□ -0.09
SHMT2-222ENST00000555774 ERMARDQ5T6L9 678 aa14.48□□□□□ -0.09
SHMT2-222ENST00000555774 AADACL2Q6P093 401 aa14.48□□□□□ -0.09
SHMT2-222ENST00000555774 CDAN1Q8IWY9 1227 aa14.48□□□□□ -0.09
SHMT2-222ENST00000555774 ZSWIM2Q8NEG5 633 aa14.48□□□□□ -0.09
SHMT2-222ENST00000555774 BBXQ8WY36 941 aaPredicted RBP14.48□□□□□ -0.09
SHMT2-222ENST00000555774 KAT2BQ92831 832 aa14.48□□□□□ -0.09
SHMT2-222ENST00000555774 ART4Q93070 314 aa14.48□□□□□ -0.09
SHMT2-222ENST00000555774 TATDN2Q93075 761 aa14.48□□□□□ -0.09
SHMT2-222ENST00000555774 RNF25Q96BH1 459 aaPredicted RBP14.48□□□□□ -0.09
SHMT2-222ENST00000555774 TAAR1Q96RJ0 339 aa14.48□□□□□ -0.09
SHMT2-222ENST00000555774 RAB20Q9NX57 234 aa14.48□□□□□ -0.09
SHMT2-222ENST00000555774 DDX20Q9UHI6 824 aaKnown RBP14.48□□□□□ -0.09
SHMT2-222ENST00000555774 CAPN7Q9Y6W3 813 aa14.48□□□□□ -0.09
SHMT2-222ENST00000555774 GOLGA8IPA6NC78 632 aa14.47□□□□□ -0.09
SHMT2-222ENST00000555774 GOLGA8JA6NMD2 632 aa14.47□□□□□ -0.09
SHMT2-222ENST00000555774 ANKRD63C9JTQ0 380 aa14.47□□□□□ -0.09
SHMT2-222ENST00000555774 CNGA1P29973 690 aa14.47□□□□□ -0.09
SHMT2-222ENST00000555774 MAN1A1P33908 653 aa14.47□□□□□ -0.09
SHMT2-222ENST00000555774 MMP13P45452 471 aa14.47□□□□□ -0.09
SHMT2-222ENST00000555774 NPTX2P47972 431 aa14.47□□□□□ -0.09
SHMT2-222ENST00000555774 GCNT1Q02742 428 aa14.47□□□□□ -0.09
SHMT2-222ENST00000555774 ACTN3Q08043 901 aaPredicted RBP14.47□□□□□ -0.09
SHMT2-222ENST00000555774 SIX1Q15475 284 aaPredicted RBP14.47□□□□□ -0.09
SHMT2-222ENST00000555774 ICE2Q659A1 982 aa14.47□□□□□ -0.09
SHMT2-222ENST00000555774 CCDC121Q6ZUS5 278 aa14.47□□□□□ -0.09
SHMT2-222ENST00000555774 SYDE1Q6ZW31 735 aaPredicted RBP14.47□□□□□ -0.09
SHMT2-222ENST00000555774 OTUD6AQ7L8S5 288 aa14.47□□□□□ -0.09
SHMT2-222ENST00000555774 ZDHHC14Q8IZN3 488 aa14.47□□□□□ -0.09
SHMT2-222ENST00000555774 TRIM11Q96F44 468 aa14.47□□□□□ -0.09
SHMT2-222ENST00000555774 XPO6Q96QU8 1125 aaKnown RBP14.47□□□□□ -0.09
SHMT2-222ENST00000555774 PDCD2LQ9BRP1 358 aa14.47□□□□□ -0.09
SHMT2-222ENST00000555774 GPRC5CQ9NQ84 441 aa14.47□□□□□ -0.09
SHMT2-222ENST00000555774 KMT5AQ9NQR1 393 aa14.47□□□□□ -0.09
SHMT2-222ENST00000555774 PHF20L1A8MW92 1017 aa14.47□□□□□ -0.09
SHMT2-222ENST00000555774 DCDC2CA8MYV0 355 aa14.47□□□□□ -0.09
SHMT2-222ENST00000555774 RGS16O15492 202 aaPredicted RBP14.47□□□□□ -0.09
SHMT2-222ENST00000555774 ECEL1O95672 775 aa14.47□□□□□ -0.09
SHMT2-222ENST00000555774 SHBGP04278 402 aa14.47□□□□□ -0.09
SHMT2-222ENST00000555774 MYBL1P10243 752 aa14.47□□□□□ -0.09
SHMT2-222ENST00000555774 EIF2AK2P19525 551 aaKnown RBP14.47□□□□□ -0.09
SHMT2-222ENST00000555774 RTP1P59025 263 aa14.47□□□□□ -0.09
SHMT2-222ENST00000555774 RPS6P62753 249 aaKnown RBP14.47□□□□□ -0.09
SHMT2-222ENST00000555774 IFT88Q13099 833 aa14.47□□□□□ -0.09
SHMT2-222ENST00000555774 CLEC16AQ2KHT3 1053 aa14.47□□□□□ -0.09
SHMT2-222ENST00000555774 RNF187Q5TA31 235 aaPredicted RBP14.47□□□□□ -0.09
SHMT2-222ENST00000555774 GKAP1Q5VSY0 366 aaPredicted RBP14.47□□□□□ -0.09
SHMT2-222ENST00000555774 TAX1BP1Q86VP1 789 aa14.47□□□□□ -0.09
SHMT2-222ENST00000555774 ZNF677Q86XU0 584 aa14.47□□□□□ -0.09
SHMT2-222ENST00000555774 CCDC105Q8IYK2 499 aa14.47□□□□□ -0.09
SHMT2-222ENST00000555774 CACNA2D3Q8IZS8 1091 aa14.47□□□□□ -0.09
SHMT2-222ENST00000555774 DDX1Q92499 740 aaKnown RBP14.47□□□□□ -0.09
SHMT2-222ENST00000555774 MOV10L1Q9BXT6 1211 aaKnown RBP14.47□□□□□ -0.09
SHMT2-222ENST00000555774 RAVER2Q9HCJ3 691 aaKnown RBP14.47□□□□□ -0.09
SHMT2-222ENST00000555774 AVENQ9NQS1 362 aaPredicted RBP14.47□□□□□ -0.09
SHMT2-222ENST00000555774 PXMP2Q9NR77 195 aa14.47□□□□□ -0.09
SHMT2-222ENST00000555774 BCS1LQ9Y276 419 aa14.47□□□□□ -0.09
SHMT2-222ENST00000555774 DENND3A2RUS2 1198 aa14.46□□□□□ -0.09
SHMT2-222ENST00000555774 H0YCG3 227 aa14.46□□□□□ -0.09
SHMT2-222ENST00000555774 FSCN2O14926 492 aa14.46□□□□□ -0.09
SHMT2-222ENST00000555774 MAFGO15525 162 aa14.46□□□□□ -0.09
SHMT2-222ENST00000555774 ZBED4O75132 1171 aa14.46□□□□□ -0.09
SHMT2-222ENST00000555774 CCNE2O96020 404 aa14.46□□□□□ -0.09
SHMT2-222ENST00000555774 GARTP22102 1010 aa14.46□□□□□ -0.09
SHMT2-222ENST00000555774 CYP24A1Q07973 514 aa14.46□□□□□ -0.09
SHMT2-222ENST00000555774 RNF207Q6ZRF8 634 aa14.46□□□□□ -0.09
SHMT2-222ENST00000555774 TRMT10CQ7L0Y3 403 aaKnown RBP14.46□□□□□ -0.09
SHMT2-222ENST00000555774 CPXCR1Q8N123 301 aa14.46□□□□□ -0.09
SHMT2-222ENST00000555774 TTLL6Q8N841 843 aa14.46□□□□□ -0.09
SHMT2-222ENST00000555774 GPRASP2Q96D09 838 aa14.46□□□□□ -0.09
SHMT2-222ENST00000555774 CHMP6Q96FZ7 201 aa14.46□□□□□ -0.09
SHMT2-222ENST00000555774 SEC16BQ96JE7 1060 aa14.46□□□□□ -0.09
SHMT2-222ENST00000555774 ROPN1BQ9BZX4 212 aaPredicted RBP14.46□□□□□ -0.09
SHMT2-222ENST00000555774 ROPN1Q9HAT0 212 aaPredicted RBP14.46□□□□□ -0.09
SHMT2-222ENST00000555774 WHRNQ9P202 907 aa14.46□□□□□ -0.09
SHMT2-222ENST00000555774 H0YHG0 523 aa14.46□□□□□ -0.1
SHMT2-222ENST00000555774 RARAP10276 462 aa14.46□□□□□ -0.1
SHMT2-222ENST00000555774 DRD4P21917 467 aa14.46□□□□□ -0.1
SHMT2-222ENST00000555774 SLC1A1P43005 524 aa14.46□□□□□ -0.1
SHMT2-222ENST00000555774 SLC29A2Q14542 456 aa14.46□□□□□ -0.1
SHMT2-222ENST00000555774 GPD1LQ8N335 351 aa14.46□□□□□ -0.1
SHMT2-222ENST00000555774 PSPC1Q8WXF1 523 aaKnown RBP14.46□□□□□ -0.1
SHMT2-222ENST00000555774 DHX38Q92620 1227 aaKnown RBP14.46□□□□□ -0.1
SHMT2-222ENST00000555774 CCDC127Q96BQ5 260 aa14.46□□□□□ -0.1
SHMT2-222ENST00000555774 SAAL1Q96ER3 474 aa14.46□□□□□ -0.1
SHMT2-222ENST00000555774 RMDN3Q96TC7 470 aa14.46□□□□□ -0.1
SHMT2-222ENST00000555774 CCDC134Q9H6E4 229 aa14.46□□□□□ -0.1
SHMT2-222ENST00000555774 KCNG1Q9UIX4 513 aa14.46□□□□□ -0.1
SHMT2-222ENST00000555774 ZBTB12Q9Y330 459 aaPredicted RBP14.46□□□□□ -0.1
SHMT2-222ENST00000555774 CTDP1Q9Y5B0 961 aaPredicted RBP14.46□□□□□ -0.1
SHMT2-222ENST00000555774 PCDHA10Q9Y5I2 948 aa14.46□□□□□ -0.1
SHMT2-222ENST00000555774 ATMINO43313 823 aaPredicted RBP14.45□□□□□ -0.1
SHMT2-222ENST00000555774 RIPK2O43353 540 aa14.45□□□□□ -0.1
SHMT2-222ENST00000555774 MYCLP12524 364 aaPredicted RBP14.45□□□□□ -0.1
SHMT2-222ENST00000555774 CALCOCO2Q13137 446 aa14.45□□□□□ -0.1
SHMT2-222ENST00000555774 TNFAIP8L3Q5GJ75 292 aa14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms