RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 CREB3L3Q68CJ9 461 aa7.07□□□□□ -1.28
VPS29-210ENST00000552130 BTN2A1Q7KYR7 527 aa7.07□□□□□ -1.28
VPS29-210ENST00000552130 ZNF605Q86T29 641 aa7.07□□□□□ -1.28
VPS29-210ENST00000552130 EGFL6Q8IUX8 553 aa7.07□□□□□ -1.28
VPS29-210ENST00000552130 GALNT15Q8N3T1 639 aa7.07□□□□□ -1.28
VPS29-210ENST00000552130 ATG16L2Q8NAA4 619 aa7.07□□□□□ -1.28
VPS29-210ENST00000552130 DTWD2Q8NBA8 298 aa7.07□□□□□ -1.28
VPS29-210ENST00000552130 FAM13CQ8NE31 585 aa7.07□□□□□ -1.28
VPS29-210ENST00000552130 DCAF4Q8WV16 495 aa7.07□□□□□ -1.28
VPS29-210ENST00000552130 BRI3BPQ8WY22 251 aa7.07□□□□□ -1.28
VPS29-210ENST00000552130 RRP36Q96EU6 259 aaKnown RBP7.07□□□□□ -1.28
VPS29-210ENST00000552130 NCAPGQ9BPX3 1015 aa7.07□□□□□ -1.28
VPS29-210ENST00000552130 GPATCH2Q9NW75 528 aa7.07□□□□□ -1.28
VPS29-210ENST00000552130 ORC3Q9UBD5 711 aaPredicted RBP7.07□□□□□ -1.28
VPS29-210ENST00000552130 TBC1D29Q9UFV1 150 aa7.07□□□□□ -1.28
VPS29-210ENST00000552130 EBF1Q9UH73 591 aa7.07□□□□□ -1.28
VPS29-210ENST00000552130 HERC5Q9UII4 1024 aaKnown RBP7.07□□□□□ -1.28
VPS29-210ENST00000552130 SERPINB13Q9UIV8 391 aa7.07□□□□□ -1.28
VPS29-210ENST00000552130 ITGB1BP2Q9UKP3 347 aa7.07□□□□□ -1.28
VPS29-210ENST00000552130 DENND2AQ9ULE3 1009 aa7.07□□□□□ -1.28
VPS29-210ENST00000552130 ZNF281Q9Y2X9 895 aa7.07□□□□□ -1.28
VPS29-210ENST00000552130 RRP15Q9Y3B9 282 aaKnown RBP7.07□□□□□ -1.28
VPS29-210ENST00000552130 NOC2LQ9Y3T9 749 aaKnown RBP7.07□□□□□ -1.28
VPS29-210ENST00000552130 POM121BA6NF01 834 aa7.06□□□□□ -1.28
VPS29-210ENST00000552130 GOLGA6L22H0YM25 854 aa7.06□□□□□ -1.28
VPS29-210ENST00000552130 DDX3XO00571 662 aaKnown RBP eCLIP7.06□□□□□ -1.282e-8■■□□□ 13
VPS29-210ENST00000552130 DOK2O60496 412 aa7.06□□□□□ -1.28
VPS29-210ENST00000552130 DTNBO60941 627 aa7.06□□□□□ -1.28
VPS29-210ENST00000552130 B3GALNT1O75752 331 aa7.06□□□□□ -1.28
VPS29-210ENST00000552130 THP07101 528 aa7.06□□□□□ -1.28
VPS29-210ENST00000552130 TSHRP16473 764 aa7.06□□□□□ -1.28
VPS29-210ENST00000552130 STMN1P16949 149 aa7.06□□□□□ -1.28
VPS29-210ENST00000552130 ALOX12P18054 663 aa7.06□□□□□ -1.28
VPS29-210ENST00000552130 AGXTP21549 392 aa7.06□□□□□ -1.28
VPS29-210ENST00000552130 NOP2P46087 812 aaKnown RBP7.06□□□□□ -1.28
VPS29-210ENST00000552130 HSPA7P48741 367 aa7.06□□□□□ -1.28
VPS29-210ENST00000552130 ALDH9A1P49189 494 aa7.06□□□□□ -1.28
VPS29-210ENST00000552130 ITGA8P53708 1063 aa7.06□□□□□ -1.28
VPS29-210ENST00000552130 MRPS35P82673 323 aaKnown RBP7.06□□□□□ -1.28
VPS29-210ENST00000552130 PMS2P11Q13670 270 aa7.06□□□□□ -1.28
VPS29-210ENST00000552130 SNX17Q15036 470 aa7.06□□□□□ -1.28
VPS29-210ENST00000552130 PFKFB4Q16877 469 aa7.06□□□□□ -1.28
VPS29-210ENST00000552130 FBXO47Q5MNV8 452 aa7.06□□□□□ -1.28
VPS29-210ENST00000552130 SLC35F1Q5T1Q4 408 aa7.06□□□□□ -1.28
VPS29-210ENST00000552130 DCAF15Q66K64 600 aa7.06□□□□□ -1.28
VPS29-210ENST00000552130 HAUS3Q68CZ6 603 aa7.06□□□□□ -1.28
VPS29-210ENST00000552130 GTF2IRD2BQ6EKJ0 949 aa7.06□□□□□ -1.28
VPS29-210ENST00000552130 JMJD6Q6NYC1 403 aaPredicted RBP7.06□□□□□ -1.28
VPS29-210ENST00000552130 KRT74Q7RTS7 529 aa7.06□□□□□ -1.28
VPS29-210ENST00000552130 GTF2IRD2Q86UP8 949 aa7.06□□□□□ -1.28
VPS29-210ENST00000552130 LIX1LQ8IVB5 337 aa7.06□□□□□ -1.28
VPS29-210ENST00000552130 TGFBRAP1Q8WUH2 860 aa7.06□□□□□ -1.28
VPS29-210ENST00000552130 BRF1Q92994 677 aa7.06□□□□□ -1.28
VPS29-210ENST00000552130 ATP2A3Q93084 1043 aa7.06□□□□□ -1.28
VPS29-210ENST00000552130 JAKMIP2Q96AA8 810 aa7.06□□□□□ -1.28
VPS29-210ENST00000552130 ZC3H10Q96K80 434 aaKnown RBP7.06□□□□□ -1.28
VPS29-210ENST00000552130 CCDC140Q96MF4 163 aa7.06□□□□□ -1.28
VPS29-210ENST00000552130 KRTAP9-8Q9BYQ0 159 aa7.06□□□□□ -1.28
VPS29-210ENST00000552130 GHITMQ9H3K2 345 aa7.06□□□□□ -1.28
VPS29-210ENST00000552130 DEF6Q9H4E7 631 aa7.06□□□□□ -1.28
VPS29-210ENST00000552130 CNTD2Q9H8S5 307 aa7.06□□□□□ -1.28
VPS29-210ENST00000552130 GRPEL1Q9HAV7 217 aa7.06□□□□□ -1.28
VPS29-210ENST00000552130 DNAJC28Q9NX36 388 aa7.06□□□□□ -1.28
VPS29-210ENST00000552130 WHRNQ9P202 907 aa7.06□□□□□ -1.28
VPS29-210ENST00000552130 VPS28Q9UK41 221 aa7.06□□□□□ -1.28
VPS29-210ENST00000552130 ADAM30Q9UKF2 790 aa7.06□□□□□ -1.28
VPS29-210ENST00000552130 CNOT6Q9ULM6 557 aaKnown RBP7.06□□□□□ -1.28
VPS29-210ENST00000552130 C17orf113A0A1B0GUU1 675 aa7.05□□□□□ -1.28
VPS29-210ENST00000552130 ARVCFO00192 962 aa7.05□□□□□ -1.28
VPS29-210ENST00000552130 FOXN3O00409 490 aaPredicted RBP7.05□□□□□ -1.28
VPS29-210ENST00000552130 MPHOSPH10O00566 681 aaKnown RBP7.05□□□□□ -1.28
VPS29-210ENST00000552130 DAPK3O43293 454 aa7.05□□□□□ -1.28
VPS29-210ENST00000552130 URI1O94763 535 aaPredicted RBP7.05□□□□□ -1.28
VPS29-210ENST00000552130 KCNH1O95259 989 aa7.05□□□□□ -1.28
VPS29-210ENST00000552130 ALDH2P05091 517 aa7.05□□□□□ -1.28
VPS29-210ENST00000552130 CKMP06732 381 aa7.05□□□□□ -1.28
VPS29-210ENST00000552130 SNRPB2P08579 225 aaKnown RBP7.05□□□□□ -1.28
VPS29-210ENST00000552130 MYF5P13349 255 aa7.05□□□□□ -1.28
VPS29-210ENST00000552130 RPL17P18621 184 aaKnown RBP7.05□□□□□ -1.28
VPS29-210ENST00000552130 ACTN2P35609 894 aa7.05□□□□□ -1.28
VPS29-210ENST00000552130 TPD52P55327 224 aaPredicted RBP7.05□□□□□ -1.28
VPS29-210ENST00000552130 FOXO1Q12778 655 aa7.05□□□□□ -1.28
VPS29-210ENST00000552130 FAM110CQ1W6H9 321 aa7.05□□□□□ -1.28
VPS29-210ENST00000552130 MPEG1Q2M385 716 aa7.05□□□□□ -1.28
VPS29-210ENST00000552130 ZNF385BQ569K4 471 aa7.05□□□□□ -1.28
VPS29-210ENST00000552130 TCERG1LQ5VWI1 586 aa7.05□□□□□ -1.28
VPS29-210ENST00000552130 KCNT2Q6UVM3 1135 aa7.05□□□□□ -1.28
VPS29-210ENST00000552130 LMBR1LQ6UX01 489 aa7.05□□□□□ -1.28
VPS29-210ENST00000552130 FAM47EQ6ZV65 393 aa7.05□□□□□ -1.28
VPS29-210ENST00000552130 CCDC144CPQ8IYA2 1237 aa7.05□□□□□ -1.28
VPS29-210ENST00000552130 PRR18Q8N4B5 295 aa7.05□□□□□ -1.28
VPS29-210ENST00000552130 CCDC33Q8N5R6 958 aa7.05□□□□□ -1.28
VPS29-210ENST00000552130 NAT8LQ8N9F0 302 aa7.05□□□□□ -1.28
VPS29-210ENST00000552130 HTRA1Q92743 480 aa7.05□□□□□ -1.28
VPS29-210ENST00000552130 ACSF2Q96CM8 615 aaPredicted RBP7.05□□□□□ -1.28
VPS29-210ENST00000552130 C1orf159Q96HA4 380 aa7.05□□□□□ -1.28
VPS29-210ENST00000552130 RCC1LQ96I51 464 aaKnown RBP7.05□□□□□ -1.28
VPS29-210ENST00000552130 MAELQ96JY0 434 aaKnown RBP7.05□□□□□ -1.28
VPS29-210ENST00000552130 C7orf26Q96N11 449 aa7.05□□□□□ -1.28
VPS29-210ENST00000552130 CNPPD1Q9BV87 410 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms