RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 SNTG2Q9NY99 539 aa12.65□□□□□ -0.38
YBX3-213ENST00000542641 HSPBP1Q9NZL4 362 aa12.65□□□□□ -0.38
YBX3-213ENST00000542641 RWDD2AQ9UIY3 292 aa12.65□□□□□ -0.38
YBX3-213ENST00000542641 LRFN2Q9ULH4 789 aa12.65□□□□□ -0.38
YBX3-213ENST00000542641 HES2Q9Y543 173 aa12.65□□□□□ -0.38
YBX3-213ENST00000542641 TET1Q8NFU7 2136 aa12.64□□□□□ -0.39
YBX3-213ENST00000542641 GOLGA8IPA6NC78 632 aa12.64□□□□□ -0.39
YBX3-213ENST00000542641 GOLGA8JA6NMD2 632 aa12.64□□□□□ -0.39
YBX3-213ENST00000542641 UPP2O95045 317 aa12.64□□□□□ -0.39
YBX3-213ENST00000542641 EOMESO95936 686 aa12.64□□□□□ -0.39
YBX3-213ENST00000542641 LDHAP00338 332 aaKnown RBP12.64□□□□□ -0.39
YBX3-213ENST00000542641 CLTAP09496 248 aa12.64□□□□□ -0.39
YBX3-213ENST00000542641 STAG3L1P0CL83 205 aa12.64□□□□□ -0.39
YBX3-213ENST00000542641 ITGA4P13612 1032 aa12.64□□□□□ -0.39
YBX3-213ENST00000542641 NR2F2P24468 414 aa12.64□□□□□ -0.39
YBX3-213ENST00000542641 AKAP5P24588 427 aa12.64□□□□□ -0.39
YBX3-213ENST00000542641 RPL13P26373 211 aaKnown RBP12.64□□□□□ -0.39
YBX3-213ENST00000542641 ERCC5P28715 1186 aaPredicted RBP12.64□□□□□ -0.39
YBX3-213ENST00000542641 GRM5P41594 1212 aa12.64□□□□□ -0.39
YBX3-213ENST00000542641 ACOT2P49753 483 aa12.64□□□□□ -0.39
YBX3-213ENST00000542641 DEFB103AP81534 67 aa12.64□□□□□ -0.39
YBX3-213ENST00000542641 SHHQ15465 462 aa12.64□□□□□ -0.39
YBX3-213ENST00000542641 EDRF1Q3B7T1 1238 aa12.64□□□□□ -0.39
YBX3-213ENST00000542641 ANO6Q4KMQ2 910 aa12.64□□□□□ -0.39
YBX3-213ENST00000542641 ZCWPW2Q504Y3 356 aa12.64□□□□□ -0.39
YBX3-213ENST00000542641 TTI2Q6NXR4 508 aa12.64□□□□□ -0.39
YBX3-213ENST00000542641 C11orf57Q6ZUT1 292 aaPredicted RBP12.64□□□□□ -0.39
YBX3-213ENST00000542641 GPD1LQ8N335 351 aa12.64□□□□□ -0.39
YBX3-213ENST00000542641 XXYLT1Q8NBI6 393 aa12.64□□□□□ -0.39
YBX3-213ENST00000542641 LPPQ93052 612 aa12.64□□□□□ -0.39
YBX3-213ENST00000542641 ACAP3Q96P50 834 aa12.64□□□□□ -0.39
YBX3-213ENST00000542641 FAM213AQ9BRX8 229 aa12.64□□□□□ -0.39
YBX3-213ENST00000542641 FUCA2Q9BTY2 467 aa12.64□□□□□ -0.39
YBX3-213ENST00000542641 CCDC94Q9BW85 323 aaPredicted RBP12.64□□□□□ -0.39
YBX3-213ENST00000542641 NAT10Q9H0A0 1025 aaKnown RBP12.64□□□□□ -0.39
YBX3-213ENST00000542641 DNAJC25Q9H1X3 360 aa12.64□□□□□ -0.39
YBX3-213ENST00000542641 KIAA1586Q9HCI6 787 aa12.64□□□□□ -0.39
YBX3-213ENST00000542641 TMEM161AQ9NX61 479 aa12.64□□□□□ -0.39
YBX3-213ENST00000542641 CXXC1Q9P0U4 656 aaPredicted RBP12.64□□□□□ -0.39
YBX3-213ENST00000542641 PARP2Q9UGN5 583 aa12.64□□□□□ -0.39
YBX3-213ENST00000542641 SLC4A7Q9Y6M7 1214 aa12.64□□□□□ -0.39
YBX3-213ENST00000542641 TNRC18O15417 2968 aaPredicted RBP12.64□□□□□ -0.39
YBX3-213ENST00000542641 TULP1O00294 542 aaPredicted RBP12.63□□□□□ -0.39
YBX3-213ENST00000542641 CETN3O15182 167 aa12.63□□□□□ -0.39
YBX3-213ENST00000542641 EXTL3O43909 919 aa12.63□□□□□ -0.39
YBX3-213ENST00000542641 FAM189A1O60320 539 aa12.63□□□□□ -0.39
YBX3-213ENST00000542641 EXOC3O60645 756 aa12.63□□□□□ -0.39
YBX3-213ENST00000542641 ATF7P17544 494 aaPredicted RBP12.63□□□□□ -0.39
YBX3-213ENST00000542641 TNFSF9P41273 254 aa12.63□□□□□ -0.39
YBX3-213ENST00000542641 YARSP54577 528 aaKnown RBP12.63□□□□□ -0.39
YBX3-213ENST00000542641 FKBP3Q00688 224 aaKnown RBP12.63□□□□□ -0.39
YBX3-213ENST00000542641 ADAM9Q13443 819 aa12.63□□□□□ -0.39
YBX3-213ENST00000542641 MYBPC2Q14324 1141 aa12.63□□□□□ -0.39
YBX3-213ENST00000542641 HSP90AA2PQ14568 343 aaPredicted RBP12.63□□□□□ -0.39
YBX3-213ENST00000542641 NFIL3Q16649 462 aa12.63□□□□□ -0.39
YBX3-213ENST00000542641 ZBTB41Q5SVQ8 909 aa12.63□□□□□ -0.39
YBX3-213ENST00000542641 C9orf50Q5SZB4 431 aa12.63□□□□□ -0.39
YBX3-213ENST00000542641 CEP135Q66GS9 1140 aa12.63□□□□□ -0.39
YBX3-213ENST00000542641 FOXR2Q6PJQ5 311 aa12.63□□□□□ -0.39
YBX3-213ENST00000542641 ZNF598Q86UK7 904 aaKnown RBP12.63□□□□□ -0.39
YBX3-213ENST00000542641 NPAS4Q8IUM7 802 aa12.63□□□□□ -0.39
YBX3-213ENST00000542641 SLC9A9Q8IVB4 645 aa12.63□□□□□ -0.39
YBX3-213ENST00000542641 TMEM192Q8IY95 271 aa12.63□□□□□ -0.39
YBX3-213ENST00000542641 CSGALNACT2Q8N6G5 542 aa12.63□□□□□ -0.39
YBX3-213ENST00000542641 RDH13Q8NBN7 331 aa12.63□□□□□ -0.39
YBX3-213ENST00000542641 ZSWIM2Q8NEG5 633 aa12.63□□□□□ -0.39
YBX3-213ENST00000542641 TMEM174Q8WUU8 243 aa12.63□□□□□ -0.39
YBX3-213ENST00000542641 TOP1MTQ969P6 601 aa12.63□□□□□ -0.39
YBX3-213ENST00000542641 EEF2KMTQ96G04 330 aa12.63□□□□□ -0.39
YBX3-213ENST00000542641 RNPC3Q96LT9 517 aaKnown RBP12.63□□□□□ -0.39
YBX3-213ENST00000542641 DUSP9Q99956 384 aaKnown RBP12.63□□□□□ -0.39
YBX3-213ENST00000542641 RPF1Q9H9Y2 349 aaKnown RBP12.63□□□□□ -0.39
YBX3-213ENST00000542641 UBN1Q9NPG3 1134 aa12.63□□□□□ -0.39
YBX3-213ENST00000542641 DMAC2Q9NW81 257 aa12.63□□□□□ -0.39
YBX3-213ENST00000542641 CPSF3Q9UKF6 684 aaKnown RBP12.63□□□□□ -0.39
YBX3-213ENST00000542641 FRMD4BQ9Y2L6 1034 aa12.63□□□□□ -0.39
YBX3-213ENST00000542641 ZNF233A6NK53 670 aa12.62□□□□□ -0.39
YBX3-213ENST00000542641 MEIS3P2A8K0S8 358 aa12.62□□□□□ -0.39
YBX3-213ENST00000542641 RECQL4O94761 1208 aa12.62□□□□□ -0.39
YBX3-213ENST00000542641 FGFR1P11362 822 aa12.62□□□□□ -0.39
YBX3-213ENST00000542641 BMP8BP34820 402 aa12.62□□□□□ -0.39
YBX3-213ENST00000542641 SNRNP35Q16560 246 aaKnown RBP12.62□□□□□ -0.39
YBX3-213ENST00000542641 TPD52L1Q16890 204 aaPredicted RBP12.62□□□□□ -0.39
YBX3-213ENST00000542641 RASIP1Q5U651 963 aa12.62□□□□□ -0.39
YBX3-213ENST00000542641 FAM117BQ6P1L5 589 aa12.62□□□□□ -0.39
YBX3-213ENST00000542641 CRELD2Q6UXH1 353 aaPredicted RBP12.62□□□□□ -0.39
YBX3-213ENST00000542641 AGMOQ6ZNB7 445 aa12.62□□□□□ -0.39
YBX3-213ENST00000542641 TMCO2Q7Z6W1 182 aaPredicted RBP12.62□□□□□ -0.39
YBX3-213ENST00000542641 CBWD2Q8IUF1 395 aa12.62□□□□□ -0.39
YBX3-213ENST00000542641 CRIPAKQ8N1N5 446 aa12.62□□□□□ -0.39
YBX3-213ENST00000542641 PHOSPHO2Q8TCD6 241 aa12.62□□□□□ -0.39
YBX3-213ENST00000542641 MED15Q96RN5 788 aa12.62□□□□□ -0.39
YBX3-213ENST00000542641 ZBED2Q9BTP6 218 aa12.62□□□□□ -0.39
YBX3-213ENST00000542641 RSAD1Q9HA92 442 aa12.62□□□□□ -0.39
YBX3-213ENST00000542641 TOPORSQ9NS56 1045 aaPredicted RBP12.62□□□□□ -0.39
YBX3-213ENST00000542641 KLK14Q9P0G3 267 aa12.62□□□□□ -0.39
YBX3-213ENST00000542641 GIT1Q9Y2X7 761 aa12.62□□□□□ -0.39
YBX3-213ENST00000542641 HOXA2O43364 376 aa12.61□□□□□ -0.39
YBX3-213ENST00000542641 AKAP3O75969 853 aa12.61□□□□□ -0.39
YBX3-213ENST00000542641 FGFR1OPO95684 399 aaKnown RBP12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 138.6 ms