RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 TRIM6Q9C030 488 aaPredicted RBP18.99■□□□□ 0.63
CLN3-216ENST00000565316 CHST7Q9NS84 486 aa18.99■□□□□ 0.63
CLN3-216ENST00000565316 LIMD1Q9UGP4 676 aa18.99■□□□□ 0.63
CLN3-216ENST00000565316 MYO10Q9HD67 2058 aa18.98■□□□□ 0.63
CLN3-216ENST00000565316 TEX28O15482 410 aa18.98■□□□□ 0.63
CLN3-216ENST00000565316 MED24O75448 989 aa18.98■□□□□ 0.63
CLN3-216ENST00000565316 NR1I2O75469 434 aa18.98■□□□□ 0.63
CLN3-216ENST00000565316 PAPLNO95428 1278 aa18.98■□□□□ 0.63
CLN3-216ENST00000565316 C1RP00736 705 aa18.98■□□□□ 0.63
CLN3-216ENST00000565316 ASGR2P07307 311 aa18.98■□□□□ 0.63
CLN3-216ENST00000565316 GLUD2P49448 558 aa18.98■□□□□ 0.63
CLN3-216ENST00000565316 NUBP1P53384 320 aa18.98■□□□□ 0.63
CLN3-216ENST00000565316 FAM187BQ17R55 369 aa18.98■□□□□ 0.63
CLN3-216ENST00000565316 GPR65Q8IYL9 337 aa18.98■□□□□ 0.63
CLN3-216ENST00000565316 PRIMPOLQ96LW4 560 aa18.98■□□□□ 0.63
CLN3-216ENST00000565316 NACC1Q96RE7 527 aa18.98■□□□□ 0.63
CLN3-216ENST00000565316 LLPHQ9BRT6 129 aaKnown RBP18.98■□□□□ 0.63
CLN3-216ENST00000565316 COLEC11Q9BWP8 271 aa18.98■□□□□ 0.63
CLN3-216ENST00000565316 APOL6Q9BWW8 343 aa18.98■□□□□ 0.63
CLN3-216ENST00000565316 FZD8Q9H461 694 aa18.98■□□□□ 0.63
CLN3-216ENST00000565316 GPRC5CQ9NQ84 441 aa18.98■□□□□ 0.63
CLN3-216ENST00000565316 LIMCH1Q9UPQ0 1083 aa18.98■□□□□ 0.63
CLN3-216ENST00000565316 F8W810 466 aa18.97■□□□□ 0.63
CLN3-216ENST00000565316 C2CD2LO14523 706 aa18.97■□□□□ 0.63
CLN3-216ENST00000565316 NPTXRO95502 500 aa18.97■□□□□ 0.63
CLN3-216ENST00000565316 ADH1AP07327 375 aa18.97■□□□□ 0.63
CLN3-216ENST00000565316 ATP2B1P20020 1258 aa18.97■□□□□ 0.63
CLN3-216ENST00000565316 AKAP5P24588 427 aa18.97■□□□□ 0.63
CLN3-216ENST00000565316 CYP26C1Q6V0L0 522 aa18.97■□□□□ 0.63
CLN3-216ENST00000565316 CCDC149Q6ZUS6 474 aa18.97■□□□□ 0.63
CLN3-216ENST00000565316 OTOP3Q7RTS5 596 aa18.97■□□□□ 0.63
CLN3-216ENST00000565316 CDR2LQ86X02 465 aaPredicted RBP18.97■□□□□ 0.63
CLN3-216ENST00000565316 PHOX2BQ99453 314 aa18.97■□□□□ 0.63
CLN3-216ENST00000565316 FOXP1Q9H334 677 aaPredicted RBP18.97■□□□□ 0.63
CLN3-216ENST00000565316 SMOC2Q9H3U7 446 aa18.97■□□□□ 0.63
CLN3-216ENST00000565316 MAN1C1Q9NR34 630 aa18.97■□□□□ 0.63
CLN3-216ENST00000565316 PRMT7Q9NVM4 692 aaPredicted RBP18.97■□□□□ 0.63
CLN3-216ENST00000565316 ZFHX2Q9C0A1 2572 aaPredicted RBP18.96■□□□□ 0.63
CLN3-216ENST00000565316 DENND4AQ7Z401 1863 aa18.96■□□□□ 0.63
CLN3-216ENST00000565316 LRRIQ4A6NIV6 560 aa18.96■□□□□ 0.63
CLN3-216ENST00000565316 RPA1P27694 616 aa18.96■□□□□ 0.63
CLN3-216ENST00000565316 GUCY1B3Q02153 619 aa18.96■□□□□ 0.63
CLN3-216ENST00000565316 GRIK3Q13003 919 aa18.96■□□□□ 0.63
CLN3-216ENST00000565316 HDAC7Q8WUI4 952 aa18.96■□□□□ 0.63
CLN3-216ENST00000565316 ACSF2Q96CM8 615 aaPredicted RBP18.96■□□□□ 0.63
CLN3-216ENST00000565316 C8orf76Q96K31 380 aa18.96■□□□□ 0.63
CLN3-216ENST00000565316 DPP7Q9UHL4 492 aa18.96■□□□□ 0.63
CLN3-216ENST00000565316 USP34Q70CQ2 3546 aa18.95■□□□□ 0.62
CLN3-216ENST00000565316 GLUD1P00367 558 aa18.95■□□□□ 0.62
CLN3-216ENST00000565316 OR52Z1P0C646 297 aa18.95■□□□□ 0.62
CLN3-216ENST00000565316 CYP11B2P19099 503 aa18.95■□□□□ 0.62
CLN3-216ENST00000565316 FUT10Q6P4F1 479 aa18.95■□□□□ 0.62
CLN3-216ENST00000565316 POTEGQ6S5H5 508 aa18.95■□□□□ 0.62
CLN3-216ENST00000565316 MAEAQ7L5Y9 396 aa18.95■□□□□ 0.62
CLN3-216ENST00000565316 FBXO18Q8NFZ0 1043 aa18.95■□□□□ 0.62
CLN3-216ENST00000565316 ERMNQ8TAM6 284 aa18.95■□□□□ 0.62
CLN3-216ENST00000565316 GPR62Q9BZJ7 368 aa18.95■□□□□ 0.62
CLN3-216ENST00000565316 SPDYE4A6NLX3 237 aa18.94■□□□□ 0.62
CLN3-216ENST00000565316 MUTP22033 750 aa18.94■□□□□ 0.62
CLN3-216ENST00000565316 ZNF174Q15697 407 aa18.94■□□□□ 0.62
CLN3-216ENST00000565316 USP41Q3LFD5 358 aa18.94■□□□□ 0.62
CLN3-216ENST00000565316 ELMSAN1Q6PJG2 1045 aa18.94■□□□□ 0.62
CLN3-216ENST00000565316 PADI6Q6TGC4 694 aa18.94■□□□□ 0.62
CLN3-216ENST00000565316 CCDC83Q8IWF9 413 aa18.94■□□□□ 0.62
CLN3-216ENST00000565316 ZBTB8OSQ8IWT0 167 aa18.94■□□□□ 0.62
CLN3-216ENST00000565316 C4orf32Q8N8J7 132 aa18.94■□□□□ 0.62
CLN3-216ENST00000565316 BSNDQ8WZ55 320 aa18.94■□□□□ 0.62
CLN3-216ENST00000565316 IRF2BPLQ9H1B7 796 aa18.94■□□□□ 0.62
CLN3-216ENST00000565316 C2orf40Q9H1Z8 148 aa18.94■□□□□ 0.62
CLN3-216ENST00000565316 PDZD7Q9H5P4 517 aa18.94■□□□□ 0.62
CLN3-216ENST00000565316 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP18.94■□□□□ 0.62
CLN3-216ENST00000565316 KLK14Q9P0G3 267 aa18.94■□□□□ 0.62
CLN3-216ENST00000565316 FNIP2Q9P278 1114 aa18.94■□□□□ 0.62
CLN3-216ENST00000565316 PARP2Q9UGN5 583 aa18.94■□□□□ 0.62
CLN3-216ENST00000565316 ADAM28Q9UKQ2 775 aa18.94■□□□□ 0.62
CLN3-216ENST00000565316 CCDC195A0A1B0GUA6 201 aa18.93■□□□□ 0.62
CLN3-216ENST00000565316 TTLL13PA6NNM8 815 aa18.93■□□□□ 0.62
CLN3-216ENST00000565316 TRAPPC10P48553 1259 aa18.93■□□□□ 0.62
CLN3-216ENST00000565316 RBM25P49756 843 aaKnown RBP18.93■□□□□ 0.62
CLN3-216ENST00000565316 LILRA6Q6PI73 481 aa18.93■□□□□ 0.62
CLN3-216ENST00000565316 ZNF707Q96C28 371 aaPredicted RBP18.93■□□□□ 0.62
CLN3-216ENST00000565316 CCDC113Q9H0I3 377 aa18.93■□□□□ 0.62
CLN3-216ENST00000565316 PLEKHA4Q9H4M7 779 aa18.93■□□□□ 0.62
CLN3-216ENST00000565316 WDR6Q9NNW5 1121 aaKnown RBP18.93■□□□□ 0.62
CLN3-216ENST00000565316 DAXXQ9UER7 740 aaPredicted RBP18.93■□□□□ 0.62
CLN3-216ENST00000565316 ARHGEF35A5YM69 484 aa18.92■□□□□ 0.62
CLN3-216ENST00000565316 ACKR2O00590 384 aa18.92■□□□□ 0.62
CLN3-216ENST00000565316 N4BP3O15049 544 aa18.92■□□□□ 0.62
CLN3-216ENST00000565316 GALR2O43603 387 aaPredicted RBP18.92■□□□□ 0.62
CLN3-216ENST00000565316 N4BP1O75113 896 aaKnown RBP18.92■□□□□ 0.62
CLN3-216ENST00000565316 NAMPTP43490 491 aa18.92■□□□□ 0.62
CLN3-216ENST00000565316 FXR2P51116 673 aaKnown RBP eCLIP18.92■□□□□ 0.62
CLN3-216ENST00000565316 HMGN5P82970 282 aaKnown RBP18.92■□□□□ 0.62
CLN3-216ENST00000565316 TUSC3Q13454 348 aa18.92■□□□□ 0.62
CLN3-216ENST00000565316 TDGQ13569 410 aa18.92■□□□□ 0.62
CLN3-216ENST00000565316 HSP90AA2PQ14568 343 aaPredicted RBP18.92■□□□□ 0.62
CLN3-216ENST00000565316 TTC38Q5R3I4 469 aa18.92■□□□□ 0.62
CLN3-216ENST00000565316 NOSTRINQ8IVI9 506 aa18.92■□□□□ 0.62
CLN3-216ENST00000565316 B3GALT6Q96L58 329 aa18.92■□□□□ 0.62
CLN3-216ENST00000565316 ZSCAN31Q96LW9 406 aaPredicted RBP18.92■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms