RNA–Protein interactions for RNA: ENST00000563911.5

HERPUD1-208, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, human

TSL 3

Gene HERPUD1, Length 844 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HERPUD1-208	ENST00000563911	SMAD3	P84022	425 aa	Known RBP	7.42	□□□□□ -1.22
HERPUD1-208	ENST00000563911	TAF7	Q15545	349 aa	Predicted RBP	7.42	□□□□□ -1.22
HERPUD1-208	ENST00000563911	SMAD2	Q15796	467 aa	Known RBP	7.42	□□□□□ -1.22
HERPUD1-208	ENST00000563911	PAN2	Q504Q3	1202 aa	Known RBP	7.42	□□□□□ -1.22
HERPUD1-208	ENST00000563911	ODR4	Q5SWX8	454 aa		7.42	□□□□□ -1.22
HERPUD1-208	ENST00000563911	PRAMEF18	Q5VWM3	479 aa		7.42	□□□□□ -1.22
HERPUD1-208	ENST00000563911	MPZL3	Q6UWV2	235 aa		7.42	□□□□□ -1.22
HERPUD1-208	ENST00000563911	DPP8	Q6V1X1	898 aa	Predicted RBP	7.42	□□□□□ -1.22
HERPUD1-208	ENST00000563911	RASAL3	Q86YV0	1011 aa		7.42	□□□□□ -1.22
HERPUD1-208	ENST00000563911	ALG3	Q92685	438 aa		7.42	□□□□□ -1.22
HERPUD1-208	ENST00000563911	SMAD5	Q99717	465 aa	Known RBP	7.42	□□□□□ -1.22
HERPUD1-208	ENST00000563911	TRIM8	Q9BZR9	551 aa		7.42	□□□□□ -1.22
HERPUD1-208	ENST00000563911	VPS33B	Q9H267	617 aa		7.42	□□□□□ -1.22
HERPUD1-208	ENST00000563911	DBNDD1	Q9H9R9	158 aa		7.42	□□□□□ -1.22
HERPUD1-208	ENST00000563911	G3BP2	Q9UN86	482 aa	Known RBP	7.42	□□□□□ -1.22
HERPUD1-208	ENST00000563911	IBTK	Q9P2D0	1353 aa	Predicted RBP	7.42	□□□□□ -1.22
HERPUD1-208	ENST00000563911	ACOT7	O00154	380 aa		7.41	□□□□□ -1.22
HERPUD1-208	ENST00000563911	FOXP2	O15409	715 aa		7.41	□□□□□ -1.22
HERPUD1-208	ENST00000563911	FXR1	P51114	621 aa	Known RBP eCLIP	7.41	□□□□□ -1.22
HERPUD1-208	ENST00000563911	YBX1	P67809	324 aa	Known RBP	7.41	□□□□□ -1.22
HERPUD1-208	ENST00000563911	TERF2	Q15554	542 aa		7.41	□□□□□ -1.22
HERPUD1-208	ENST00000563911	OLFML2B	Q68BL8	750 aa		7.41	□□□□□ -1.22
HERPUD1-208	ENST00000563911	TMC6	Q7Z403	805 aa		7.41	□□□□□ -1.22
HERPUD1-208	ENST00000563911	CLRN3	Q8NCR9	226 aa		7.41	□□□□□ -1.22
HERPUD1-208	ENST00000563911	TTLL11	Q8NHH1	800 aa		7.41	□□□□□ -1.22
HERPUD1-208	ENST00000563911	DPF2	Q92785	391 aa		7.41	□□□□□ -1.22
HERPUD1-208	ENST00000563911	CELF1	Q92879	486 aa	Known RBP	7.41	□□□□□ -1.22
HERPUD1-208	ENST00000563911	CDCA5	Q96FF9	252 aa		7.41	□□□□□ -1.22
HERPUD1-208	ENST00000563911	TOE1	Q96GM8	510 aa	Known RBP	7.41	□□□□□ -1.22
HERPUD1-208	ENST00000563911	AHCYL2	Q96HN2	611 aa	Known RBP	7.41	□□□□□ -1.22
HERPUD1-208	ENST00000563911	ASPSCR1	Q9BZE9	553 aa		7.41	□□□□□ -1.22
HERPUD1-208	ENST00000563911	VTA1	Q9NP79	307 aa		7.41	□□□□□ -1.22
HERPUD1-208	ENST00000563911	NOC2L	Q9Y3T9	749 aa	Known RBP	7.41	□□□□□ -1.22
HERPUD1-208	ENST00000563911	LAMB2	P55268	1798 aa		7.41	□□□□□ -1.22
HERPUD1-208	ENST00000563911	LOC107983988	A0A1B0GUW6	1196 aa	Predicted RBP	7.4	□□□□□ -1.22
HERPUD1-208	ENST00000563911	UBE2Q2L	H0YL09	131 aa		7.4	□□□□□ -1.22
HERPUD1-208	ENST00000563911	ALDH1L1	O75891	902 aa		7.4	□□□□□ -1.22
HERPUD1-208	ENST00000563911	BBOX1	O75936	387 aa		7.4	□□□□□ -1.22
HERPUD1-208	ENST00000563911	FAH	P16930	419 aa		7.4	□□□□□ -1.22
HERPUD1-208	ENST00000563911	GPSM2	P81274	684 aa		7.4	□□□□□ -1.22
HERPUD1-208	ENST00000563911	TNIP1	Q15025	636 aa		7.4	□□□□□ -1.22
HERPUD1-208	ENST00000563911	SYDE2	Q5VT97	1194 aa		7.4	□□□□□ -1.22
HERPUD1-208	ENST00000563911	ZNF605	Q86T29	641 aa		7.4	□□□□□ -1.22
HERPUD1-208	ENST00000563911	RASSF3	Q86WH2	238 aa		7.4	□□□□□ -1.22
HERPUD1-208	ENST00000563911	ZZZ3	Q8IYH5	903 aa		7.4	□□□□□ -1.22
HERPUD1-208	ENST00000563911	FAM168A	Q92567	244 aa		7.4	□□□□□ -1.22
HERPUD1-208	ENST00000563911	ERCC4	Q92889	916 aa	Predicted RBP	7.4	□□□□□ -1.22
HERPUD1-208	ENST00000563911	DDX11	Q96FC9	970 aa		7.4	□□□□□ -1.22
HERPUD1-208	ENST00000563911	DTL	Q9NZJ0	730 aa		7.4	□□□□□ -1.22
HERPUD1-208	ENST00000563911	TRHDE	Q9UKU6	1024 aa		7.4	□□□□□ -1.22
HERPUD1-208	ENST00000563911	CDHR2	Q9BYE9	1310 aa		7.4	□□□□□ -1.22
HERPUD1-208	ENST00000563911	SCN9A	Q15858	1988 aa		7.39	□□□□□ -1.23
HERPUD1-208	ENST00000563911	PAPLN	O95428	1278 aa		7.39	□□□□□ -1.23
HERPUD1-208	ENST00000563911	MME	P08473	750 aa		7.39	□□□□□ -1.23
HERPUD1-208	ENST00000563911	SDHA	P31040	664 aa		7.39	□□□□□ -1.23
HERPUD1-208	ENST00000563911	VIPR1	P32241	457 aa		7.39	□□□□□ -1.23
HERPUD1-208	ENST00000563911	PHC1	P78364	1004 aa		7.39	□□□□□ -1.23
HERPUD1-208	ENST00000563911	ZNF200	P98182	395 aa	Predicted RBP	7.39	□□□□□ -1.23
HERPUD1-208	ENST00000563911	CATSPERE	Q5SY80	951 aa		7.39	□□□□□ -1.23
HERPUD1-208	ENST00000563911	ETV3L	Q6ZN32	361 aa		7.39	□□□□□ -1.23
HERPUD1-208	ENST00000563911	FAM126B	Q8IXS8	530 aa		7.39	□□□□□ -1.23
HERPUD1-208	ENST00000563911	ZNF610	Q8N9Z0	462 aa		7.39	□□□□□ -1.23
HERPUD1-208	ENST00000563911	LIN37	Q96GY3	246 aa	Predicted RBP	7.39	□□□□□ -1.23
HERPUD1-208	ENST00000563911	UTP14A	Q9BVJ6	771 aa	Known RBP	7.39	□□□□□ -1.23
HERPUD1-208	ENST00000563911	ZNF552	Q9H707	407 aa	Predicted RBP	7.39	□□□□□ -1.23
HERPUD1-208	ENST00000563911	GGA3	Q9NZ52	723 aa		7.39	□□□□□ -1.23
HERPUD1-208	ENST00000563911	LAMB4	A4D0S4	1761 aa		7.38	□□□□□ -1.23
HERPUD1-208	ENST00000563911	KDM3B	Q7LBC6	1761 aa		7.38	□□□□□ -1.23
HERPUD1-208	ENST00000563911	HTATSF1	O43719	755 aa	Known RBP	7.38	□□□□□ -1.23
HERPUD1-208	ENST00000563911	ECE2	O60344	883 aa		7.38	□□□□□ -1.23
HERPUD1-208	ENST00000563911	U2AF1L5	P0DN76	240 aa	Predicted RBP	7.38	□□□□□ -1.23
HERPUD1-208	ENST00000563911	CD40	P25942	277 aa		7.38	□□□□□ -1.23
HERPUD1-208	ENST00000563911	STAT5A	P42229	794 aa		7.38	□□□□□ -1.23
HERPUD1-208	ENST00000563911	TM4SF4	P48230	202 aa		7.38	□□□□□ -1.23
HERPUD1-208	ENST00000563911	FNTB	P49356	437 aa		7.38	□□□□□ -1.23
HERPUD1-208	ENST00000563911	HERVK_113	P62684	666 aa		7.38	□□□□□ -1.23
HERPUD1-208	ENST00000563911	SRSF3	P84103	164 aa	Known RBP	7.38	□□□□□ -1.23
HERPUD1-208	ENST00000563911	U2AF1	Q01081	240 aa	Known RBP eCLIP	7.38	□□□□□ -1.23
HERPUD1-208	ENST00000563911	GRAP	Q13588	217 aa		7.38	□□□□□ -1.23
HERPUD1-208	ENST00000563911	LRRC32	Q14392	662 aa		7.38	□□□□□ -1.23
HERPUD1-208	ENST00000563911	GPR158	Q5T848	1215 aa		7.38	□□□□□ -1.23
HERPUD1-208	ENST00000563911	ESRP1	Q6NXG1	681 aa	Known RBP	7.38	□□□□□ -1.23
HERPUD1-208	ENST00000563911	CD300LD	Q6UXZ3	194 aa		7.38	□□□□□ -1.23
HERPUD1-208	ENST00000563911	KIF6	Q6ZMV9	814 aa		7.38	□□□□□ -1.23
HERPUD1-208	ENST00000563911	MIB1	Q86YT6	1006 aa		7.38	□□□□□ -1.23
HERPUD1-208	ENST00000563911	HIPK4	Q8NE63	616 aa		7.38	□□□□□ -1.23
HERPUD1-208	ENST00000563911	SUPT20H	Q8NEM7	779 aa		7.38	□□□□□ -1.23
HERPUD1-208	ENST00000563911	GRAPL	Q8TC17	118 aa	Predicted RBP	7.38	□□□□□ -1.23
HERPUD1-208	ENST00000563911	RTF1	Q92541	710 aa	Known RBP	7.38	□□□□□ -1.23
HERPUD1-208	ENST00000563911	GBP4	Q96PP9	640 aa		7.38	□□□□□ -1.23
HERPUD1-208	ENST00000563911	PLEKHF1	Q96S99	279 aa		7.38	□□□□□ -1.23
HERPUD1-208	ENST00000563911	MENT	Q9BUN1	341 aa		7.38	□□□□□ -1.23
HERPUD1-208	ENST00000563911	MXD3	Q9BW11	206 aa		7.38	□□□□□ -1.23
HERPUD1-208	ENST00000563911	MS4A5	Q9H3V2	200 aa		7.38	□□□□□ -1.23
HERPUD1-208	ENST00000563911	ZMAT4	Q9H898	229 aa		7.38	□□□□□ -1.23
HERPUD1-208	ENST00000563911	FZD1	Q9UP38	647 aa		7.38	□□□□□ -1.23
HERPUD1-208	ENST00000563911	ZNF503-AS2	A6NEH8	195 aa		7.37	□□□□□ -1.23
HERPUD1-208	ENST00000563911	HRK	O00198	91 aa		7.37	□□□□□ -1.23
HERPUD1-208	ENST00000563911	LRG1	P02750	347 aa		7.37	□□□□□ -1.23
HERPUD1-208	ENST00000563911	EN2	P19622	333 aa	Predicted RBP	7.37	□□□□□ -1.23

Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms