RNA–Protein interactions for RNA: ENST00000529182.5

VPS28-210, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2 BASIC

Gene VPS28, Length 1,010 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-210ENST00000529182 COLGALT1Q8NBJ5 622 aa14.67□□□□□ -0.06
VPS28-210ENST00000529182 MRPL9Q9BYD2 267 aaKnown RBP14.67□□□□□ -0.06
VPS28-210ENST00000529182 GBP3Q9H0R5 595 aa14.67□□□□□ -0.06
VPS28-210ENST00000529182 PTPRHQ9HD43 1115 aa14.67□□□□□ -0.06
VPS28-210ENST00000529182 ALG13Q9NP73 1137 aaKnown RBP14.67□□□□□ -0.06
VPS28-210ENST00000529182 TSHZ2Q9NRE2 1034 aa14.67□□□□□ -0.06
VPS28-210ENST00000529182 PANK4Q9NVE7 773 aa14.67□□□□□ -0.06
VPS28-210ENST00000529182 MIOSQ9NXC5 875 aa14.67□□□□□ -0.06
VPS28-210ENST00000529182 KCNG1Q9UIX4 513 aa14.67□□□□□ -0.06
VPS28-210ENST00000529182 TBX20Q9UMR3 447 aa14.67□□□□□ -0.06
VPS28-210ENST00000529182 MTCH2Q9Y6C9 303 aa14.67□□□□□ -0.06
VPS28-210ENST00000529182 PRRC2BQ5JSZ5 2229 aaKnown RBP14.66□□□□□ -0.06
VPS28-210ENST00000529182 RALGAPA2Q2PPJ7 1873 aa14.66□□□□□ -0.06
VPS28-210ENST00000529182 FAM237AA0A1B0GTK4 181 aa14.66□□□□□ -0.06
VPS28-210ENST00000529182 A0A1W2PQ27 194 aa14.66□□□□□ -0.06
VPS28-210ENST00000529182 A0A1W2PQ64 194 aa14.66□□□□□ -0.06
VPS28-210ENST00000529182 A0A1W2PQD8 194 aa14.66□□□□□ -0.06
VPS28-210ENST00000529182 ARL5CA6NH57 179 aa14.66□□□□□ -0.06
VPS28-210ENST00000529182 NT5C1B-RDH14C9J2C7 533 aa14.66□□□□□ -0.06
VPS28-210ENST00000529182 H0YCG3 227 aa14.66□□□□□ -0.06
VPS28-210ENST00000529182 GRM6O15303 877 aa14.66□□□□□ -0.06
VPS28-210ENST00000529182 ZC3H11AO75152 810 aaKnown RBP eCLIP14.66□□□□□ -0.067e-6■■■■■ 33.7
VPS28-210ENST00000529182 RECQL4O94761 1208 aa14.66□□□□□ -0.06
VPS28-210ENST00000529182 ITGB1P05556 798 aa14.66□□□□□ -0.06
VPS28-210ENST00000529182 RB1P06400 928 aa14.66□□□□□ -0.06
VPS28-210ENST00000529182 GAP43P17677 238 aa14.66□□□□□ -0.06
VPS28-210ENST00000529182 LAG3P18627 525 aa14.66□□□□□ -0.06
VPS28-210ENST00000529182 PROZP22891 400 aa14.66□□□□□ -0.06
VPS28-210ENST00000529182 SCNN1GP51170 649 aa14.66□□□□□ -0.06
VPS28-210ENST00000529182 CASP5P51878 434 aa14.66□□□□□ -0.06
VPS28-210ENST00000529182 OSTNP61366 133 aa14.66□□□□□ -0.06
VPS28-210ENST00000529182 ASIC1P78348 528 aa14.66□□□□□ -0.06
VPS28-210ENST00000529182 GTF2BQ00403 316 aa14.66□□□□□ -0.06
VPS28-210ENST00000529182 AMPD3Q01432 767 aa14.66□□□□□ -0.06
VPS28-210ENST00000529182 RNASELQ05823 741 aaKnown RBP14.66□□□□□ -0.06
VPS28-210ENST00000529182 COASYQ13057 564 aa14.66□□□□□ -0.06
VPS28-210ENST00000529182 CCDC85BQ15834 202 aaPredicted RBP14.66□□□□□ -0.06
VPS28-210ENST00000529182 ZNF720Q7Z2F6 126 aa14.66□□□□□ -0.06
VPS28-210ENST00000529182 ZNF280BQ86YH2 543 aa14.66□□□□□ -0.06
VPS28-210ENST00000529182 HACE1Q8IYU2 909 aa14.66□□□□□ -0.06
VPS28-210ENST00000529182 CEP57L1Q8IYX8 460 aa14.66□□□□□ -0.06
VPS28-210ENST00000529182 URGCPQ8TCY9 931 aa14.66□□□□□ -0.06
VPS28-210ENST00000529182 PPM1EQ8WY54 764 aa14.66□□□□□ -0.06
VPS28-210ENST00000529182 MRPS27Q92552 414 aaKnown RBP14.66□□□□□ -0.06
VPS28-210ENST00000529182 HPS3Q969F9 1004 aa14.66□□□□□ -0.06
VPS28-210ENST00000529182 BICD1Q96G01 975 aa14.66□□□□□ -0.06
VPS28-210ENST00000529182 TCHPQ9BT92 498 aa14.66□□□□□ -0.06
VPS28-210ENST00000529182 C11orf84Q9BUA3 381 aaPredicted RBP14.66□□□□□ -0.06
VPS28-210ENST00000529182 PLVAPQ9BX97 442 aa14.66□□□□□ -0.06
VPS28-210ENST00000529182 HAPLN2Q9GZV7 340 aa14.66□□□□□ -0.06
VPS28-210ENST00000529182 CXCL16Q9H2A7 254 aa14.66□□□□□ -0.06
VPS28-210ENST00000529182 IKZF4Q9H2S9 585 aa14.66□□□□□ -0.06
VPS28-210ENST00000529182 NRDE2Q9H7Z3 1164 aa14.66□□□□□ -0.06
VPS28-210ENST00000529182 MRPL44Q9H9J2 332 aaKnown RBP14.66□□□□□ -0.06
VPS28-210ENST00000529182 CHMP5Q9NZZ3 219 aa14.66□□□□□ -0.06
VPS28-210ENST00000529182 ANKFY1Q9P2R3 1169 aa14.66□□□□□ -0.06
VPS28-210ENST00000529182 DNAJB4Q9UDY4 337 aa14.66□□□□□ -0.06
VPS28-210ENST00000529182 GDAQ9Y2T3 454 aa14.66□□□□□ -0.06
VPS28-210ENST00000529182 GIT1Q9Y2X7 761 aa14.66□□□□□ -0.06
VPS28-210ENST00000529182 TISP43B9A030 160 aa14.65□□□□□ -0.06
VPS28-210ENST00000529182 GTPBP6O43824 516 aaPredicted RBP14.65□□□□□ -0.06
VPS28-210ENST00000529182 TOM1L1O75674 476 aa14.65□□□□□ -0.06
VPS28-210ENST00000529182 DDHD2O94830 711 aa14.65□□□□□ -0.06
VPS28-210ENST00000529182 SLFN14P0C7P3 912 aa14.65□□□□□ -0.06
VPS28-210ENST00000529182 MYBP10242 640 aa14.65□□□□□ -0.06
VPS28-210ENST00000529182 DNAJB1P25685 340 aa14.65□□□□□ -0.06
VPS28-210ENST00000529182 SYKP43405 635 aa14.65□□□□□ -0.06
VPS28-210ENST00000529182 KCNA1Q09470 495 aa14.65□□□□□ -0.06
VPS28-210ENST00000529182 CUL4BQ13620 913 aa14.65□□□□□ -0.06
VPS28-210ENST00000529182 KCNT2Q6UVM3 1135 aa14.65□□□□□ -0.06
VPS28-210ENST00000529182 MPZL3Q6UWV2 235 aa14.65□□□□□ -0.06
VPS28-210ENST00000529182 ZPBP2Q6X784 338 aa14.65□□□□□ -0.06
VPS28-210ENST00000529182 MAP4K3Q8IVH8 894 aa14.65□□□□□ -0.06
VPS28-210ENST00000529182 THNSL1Q8IYQ7 743 aa14.65□□□□□ -0.06
VPS28-210ENST00000529182 GSTCDQ8NEC7 633 aa14.65□□□□□ -0.06
VPS28-210ENST00000529182 MAFAQ8NHW3 353 aaPredicted RBP14.65□□□□□ -0.06
VPS28-210ENST00000529182 KCNN1Q92952 543 aa14.65□□□□□ -0.06
VPS28-210ENST00000529182 PAGE5Q96GU1 130 aa14.65□□□□□ -0.06
VPS28-210ENST00000529182 ZNF558Q96NG5 402 aa14.65□□□□□ -0.06
VPS28-210ENST00000529182 C7orf25Q9BPX7 421 aa14.65□□□□□ -0.06
VPS28-210ENST00000529182 PYM1Q9BRP8 204 aaKnown RBP14.65□□□□□ -0.06
VPS28-210ENST00000529182 LRRC27Q9C0I9 530 aa14.65□□□□□ -0.06
VPS28-210ENST00000529182 MAGEF1Q9HAY2 307 aa14.65□□□□□ -0.06
VPS28-210ENST00000529182 UBN1Q9NPG3 1134 aa14.65□□□□□ -0.06
VPS28-210ENST00000529182 AAASQ9NRG9 546 aa14.65□□□□□ -0.06
VPS28-210ENST00000529182 SEL1LQ9UBV2 794 aa14.65□□□□□ -0.06
VPS28-210ENST00000529182 PLAGL2Q9UPG8 496 aa14.65□□□□□ -0.06
VPS28-210ENST00000529182 PCDHB12Q9Y5F1 795 aa14.65□□□□□ -0.06
VPS28-210ENST00000529182 HNRNPDLO14979 420 aaKnown RBP14.64□□□□□ -0.07
VPS28-210ENST00000529182 INPPL1O15357 1258 aa14.64□□□□□ -0.07
VPS28-210ENST00000529182 PPP1R37O75864 691 aa14.64□□□□□ -0.07
VPS28-210ENST00000529182 FGF18O76093 207 aa14.64□□□□□ -0.07
VPS28-210ENST00000529182 GCNT3O95395 438 aa14.64□□□□□ -0.07
VPS28-210ENST00000529182 MCF2P10911 925 aa14.64□□□□□ -0.07
VPS28-210ENST00000529182 MATR3P43243 847 aaKnown RBP eCLIP14.64□□□□□ -0.07
VPS28-210ENST00000529182 LIG4P49917 911 aa14.64□□□□□ -0.07
VPS28-210ENST00000529182 BCAR1P56945 870 aa14.64□□□□□ -0.07
VPS28-210ENST00000529182 SEZ6Q53EL9 994 aa14.64□□□□□ -0.07
VPS28-210ENST00000529182 SLC39A4Q6P5W5 647 aa14.64□□□□□ -0.07
VPS28-210ENST00000529182 TMEM173Q86WV6 379 aaPredicted RBP14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms