RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 PCIF1Q9H4Z3 704 aa16.36■□□□□ 0.21
NUP54-213ENST00000513352 CTNND2Q9UQB3 1225 aa16.36■□□□□ 0.21
NUP54-213ENST00000513352 HES2Q9Y543 173 aa16.36■□□□□ 0.21
NUP54-213ENST00000513352 IPPQ9Y573 584 aa16.36■□□□□ 0.21
NUP54-213ENST00000513352 PTPRSQ13332 1948 aa16.35■□□□□ 0.21
NUP54-213ENST00000513352 A0A0U1RQF3 1178 aa16.35■□□□□ 0.21
NUP54-213ENST00000513352 PSMA7O14818 248 aa16.35■□□□□ 0.21
NUP54-213ENST00000513352 CLIC2O15247 247 aa16.35■□□□□ 0.21
NUP54-213ENST00000513352 ITGA4P13612 1032 aa16.35■□□□□ 0.21
NUP54-213ENST00000513352 ATP2A2P16615 1042 aaKnown RBP16.35■□□□□ 0.21
NUP54-213ENST00000513352 PROZP22891 400 aa16.35■□□□□ 0.21
NUP54-213ENST00000513352 HOXD13P35453 343 aa16.35■□□□□ 0.21
NUP54-213ENST00000513352 CYP2J2P51589 502 aa16.35■□□□□ 0.21
NUP54-213ENST00000513352 MCL1Q07820 350 aa16.35■□□□□ 0.21
NUP54-213ENST00000513352 LPPQ93052 612 aa16.35■□□□□ 0.21
NUP54-213ENST00000513352 PGBD4Q96DM1 585 aa16.35■□□□□ 0.21
NUP54-213ENST00000513352 SLC9A7Q96T83 725 aa16.35■□□□□ 0.21
NUP54-213ENST00000513352 TSG101Q99816 390 aa16.35■□□□□ 0.21
NUP54-213ENST00000513352 ZBED2Q9BTP6 218 aa16.35■□□□□ 0.21
NUP54-213ENST00000513352 CCDC94Q9BW85 323 aaPredicted RBP16.35■□□□□ 0.21
NUP54-213ENST00000513352 TYW1Q9NV66 732 aaKnown RBP16.35■□□□□ 0.21
NUP54-213ENST00000513352 PARP2Q9UGN5 583 aa16.35■□□□□ 0.21
NUP54-213ENST00000513352 CALUO43852 315 aaPredicted RBP16.34■□□□□ 0.21
NUP54-213ENST00000513352 BMP6P22004 513 aa16.34■□□□□ 0.21
NUP54-213ENST00000513352 AKAP5P24588 427 aa16.34■□□□□ 0.21
NUP54-213ENST00000513352 BMP8BP34820 402 aa16.34■□□□□ 0.21
NUP54-213ENST00000513352 PPP1R2P41236 205 aa16.34■□□□□ 0.21
NUP54-213ENST00000513352 NLRP12P59046 1061 aa16.34■□□□□ 0.21
NUP54-213ENST00000513352 SEZ6Q53EL9 994 aa16.34■□□□□ 0.21
NUP54-213ENST00000513352 RBM43Q6ZSC3 357 aaKnown RBP16.34■□□□□ 0.21
NUP54-213ENST00000513352 TDHQ8IZJ6 230 aa16.34■□□□□ 0.21
NUP54-213ENST00000513352 ABI1Q8IZP0 508 aa16.34■□□□□ 0.21
NUP54-213ENST00000513352 ADSSL1Q8N142 457 aa16.34■□□□□ 0.21
NUP54-213ENST00000513352 CEP120Q8N960 986 aa16.34■□□□□ 0.21
NUP54-213ENST00000513352 GOLGA5Q8TBA6 731 aa16.34■□□□□ 0.21
NUP54-213ENST00000513352 SAAL1Q96ER3 474 aa16.34■□□□□ 0.21
NUP54-213ENST00000513352 CBWD1Q9BRT8 395 aa16.34■□□□□ 0.21
NUP54-213ENST00000513352 TRAIPQ9BWF2 469 aa16.34■□□□□ 0.21
NUP54-213ENST00000513352 HAPLN2Q9GZV7 340 aa16.34■□□□□ 0.21
NUP54-213ENST00000513352 PTPRHQ9HD43 1115 aa16.34■□□□□ 0.21
NUP54-213ENST00000513352 AGPAT3Q9NRZ7 376 aa16.34■□□□□ 0.21
NUP54-213ENST00000513352 TMEM161AQ9NX61 479 aa16.34■□□□□ 0.21
NUP54-213ENST00000513352 SNTG2Q9NY99 539 aa16.34■□□□□ 0.21
NUP54-213ENST00000513352 AGO2Q9UKV8 859 aaKnown RBP16.34■□□□□ 0.21
NUP54-213ENST00000513352 CITO14578 2027 aa16.34■□□□□ 0.21
NUP54-213ENST00000513352 A0A0B4J269 797 aa16.33■□□□□ 0.2
NUP54-213ENST00000513352 GOLGA8IPA6NC78 632 aa16.33■□□□□ 0.2
NUP54-213ENST00000513352 GOLGA8JA6NMD2 632 aa16.33■□□□□ 0.2
NUP54-213ENST00000513352 ABLIM1O14639 778 aa16.33■□□□□ 0.2
NUP54-213ENST00000513352 OGTO15294 1046 aa16.33■□□□□ 0.2
NUP54-213ENST00000513352 TGFB1I1O43294 461 aa16.33■□□□□ 0.2
NUP54-213ENST00000513352 LETM1O95202 739 aaPredicted RBP16.33■□□□□ 0.2
NUP54-213ENST00000513352 EOMESO95936 686 aa16.33■□□□□ 0.2
NUP54-213ENST00000513352 FGFR1P11362 822 aa16.33■□□□□ 0.2
NUP54-213ENST00000513352 CD44P16070 742 aaKnown RBP16.33■□□□□ 0.2
NUP54-213ENST00000513352 ATF7P17544 494 aaPredicted RBP16.33■□□□□ 0.2
NUP54-213ENST00000513352 GARTP22102 1010 aa16.33■□□□□ 0.2
NUP54-213ENST00000513352 YARSP54577 528 aaKnown RBP16.33■□□□□ 0.2
NUP54-213ENST00000513352 DPCR1Q3MIW9 517 aa16.33■□□□□ 0.2
NUP54-213ENST00000513352 COBLL1Q53SF7 1204 aa16.33■□□□□ 0.2
NUP54-213ENST00000513352 SMG8Q8ND04 991 aaKnown RBP16.33■□□□□ 0.2
NUP54-213ENST00000513352 NELFBQ8WX92 580 aa16.33■□□□□ 0.2
NUP54-213ENST00000513352 FAM213AQ9BRX8 229 aa16.33■□□□□ 0.2
NUP54-213ENST00000513352 KCTD10Q9H3F6 313 aa16.33■□□□□ 0.2
NUP54-213ENST00000513352 ELAC1Q9H777 363 aaKnown RBP16.33■□□□□ 0.2
NUP54-213ENST00000513352 DACH1Q9UI36 760 aa16.33■□□□□ 0.2
NUP54-213ENST00000513352 INPP5FQ9Y2H2 1132 aa16.33■□□□□ 0.2
NUP54-213ENST00000513352 MEIS3P2A8K0S8 358 aa16.32■□□□□ 0.2
NUP54-213ENST00000513352 PDXKO00764 312 aa16.32■□□□□ 0.2
NUP54-213ENST00000513352 HOXA2O43364 376 aa16.32■□□□□ 0.2
NUP54-213ENST00000513352 ZNF623O75123 536 aa16.32■□□□□ 0.2
NUP54-213ENST00000513352 RECQL4O94761 1208 aa16.32■□□□□ 0.2
NUP54-213ENST00000513352 ADSSP30520 456 aa16.32■□□□□ 0.2
NUP54-213ENST00000513352 GRM5P41594 1212 aa16.32■□□□□ 0.2
NUP54-213ENST00000513352 GATMP50440 423 aa16.32■□□□□ 0.2
NUP54-213ENST00000513352 STX17P56962 302 aa16.32■□□□□ 0.2
NUP54-213ENST00000513352 FAM189BP81408 668 aa16.32■□□□□ 0.2
NUP54-213ENST00000513352 PAK1Q13153 545 aa16.32■□□□□ 0.2
NUP54-213ENST00000513352 STX1AQ16623 288 aa16.32■□□□□ 0.2
NUP54-213ENST00000513352 PAN2Q504Q3 1202 aaKnown RBP16.32■□□□□ 0.2
NUP54-213ENST00000513352 PRPF38BQ5VTL8 546 aaKnown RBP16.32■□□□□ 0.2
NUP54-213ENST00000513352 GLB1LQ6UWU2 654 aa16.32■□□□□ 0.2
NUP54-213ENST00000513352 MLKLQ8NB16 471 aa16.32■□□□□ 0.2
NUP54-213ENST00000513352 HELQQ8TDG4 1101 aa16.32■□□□□ 0.2
NUP54-213ENST00000513352 P2RX5Q93086 422 aa16.32■□□□□ 0.2
NUP54-213ENST00000513352 TOP1MTQ969P6 601 aa16.32■□□□□ 0.2
NUP54-213ENST00000513352 FAM212AQ96EL1 285 aa16.32■□□□□ 0.2
NUP54-213ENST00000513352 DHTKD1Q96HY7 919 aaPredicted RBP16.32■□□□□ 0.2
NUP54-213ENST00000513352 ACAP3Q96P50 834 aa16.32■□□□□ 0.2
NUP54-213ENST00000513352 RPS6KC1Q96S38 1066 aa16.32■□□□□ 0.2
NUP54-213ENST00000513352 YME1L1Q96TA2 773 aa16.32■□□□□ 0.2
NUP54-213ENST00000513352 GZF1Q9H116 711 aaPredicted RBP16.32■□□□□ 0.2
NUP54-213ENST00000513352 RNF39Q9H2S5 420 aa16.32■□□□□ 0.2
NUP54-213ENST00000513352 SEMA6BQ9H3T3 888 aa16.32■□□□□ 0.2
NUP54-213ENST00000513352 RSAD1Q9HA92 442 aa16.32■□□□□ 0.2
NUP54-213ENST00000513352 ANO10Q9NW15 660 aa16.32■□□□□ 0.2
NUP54-213ENST00000513352 HSPBP1Q9NZL4 362 aa16.32■□□□□ 0.2
NUP54-213ENST00000513352 KLK14Q9P0G3 267 aa16.32■□□□□ 0.2
NUP54-213ENST00000513352 CGNQ9P2M7 1197 aaKnown RBP16.32■□□□□ 0.2
NUP54-213ENST00000513352 STYXL1Q9Y6J8 313 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms