RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 RASSF8Q8NHQ8 419 aa17.88■□□□□ 0.45
TRIM28-206ENST00000595974 PLIN2Q99541 437 aa17.88■□□□□ 0.45
TRIM28-206ENST00000595974 KIFC3Q9BVG8 833 aa17.88■□□□□ 0.45
TRIM28-206ENST00000595974 COL25A1Q9BXS0 654 aaPredicted RBP17.88■□□□□ 0.45
TRIM28-206ENST00000595974 NXF3Q9H4D5 531 aaKnown RBP17.88■□□□□ 0.45
TRIM28-206ENST00000595974 TRIP11Q15643 1979 aa17.88■□□□□ 0.45
TRIM28-206ENST00000595974 DLL1O00548 723 aa17.87■□□□□ 0.45
TRIM28-206ENST00000595974 NPTXRO95502 500 aa17.87■□□□□ 0.45
TRIM28-206ENST00000595974 NPTX2P47972 431 aa17.87■□□□□ 0.45
TRIM28-206ENST00000595974 PEX3P56589 373 aa17.87■□□□□ 0.45
TRIM28-206ENST00000595974 HYAL1Q12794 435 aa17.87■□□□□ 0.45
TRIM28-206ENST00000595974 TMEM132AQ24JP5 1023 aa17.87■□□□□ 0.45
TRIM28-206ENST00000595974 USP28Q96RU2 1077 aa17.87■□□□□ 0.45
TRIM28-206ENST00000595974 ADPGKQ9BRR6 497 aa17.87■□□□□ 0.45
TRIM28-206ENST00000595974 CCSER1Q9C0I3 900 aa17.87■□□□□ 0.45
TRIM28-206ENST00000595974 PDZD7Q9H5P4 517 aa17.87■□□□□ 0.45
TRIM28-206ENST00000595974 NRDE2Q9H7Z3 1164 aa17.87■□□□□ 0.45
TRIM28-206ENST00000595974 POLD4Q9HCU8 107 aa17.87■□□□□ 0.45
TRIM28-206ENST00000595974 FBXO2Q9UK22 296 aaPredicted RBP17.87■□□□□ 0.45
TRIM28-206ENST00000595974 GIT1Q9Y2X7 761 aa17.87■□□□□ 0.45
TRIM28-206ENST00000595974 HES2Q9Y543 173 aa17.87■□□□□ 0.45
TRIM28-206ENST00000595974 SRPRBQ9Y5M8 271 aaKnown RBP17.87■□□□□ 0.45
TRIM28-206ENST00000595974 CITO14578 2027 aa17.86■□□□□ 0.45
TRIM28-206ENST00000595974 FSD2A1L4K1 749 aa17.86■□□□□ 0.45
TRIM28-206ENST00000595974 CCDC169A6NNP5 214 aa17.86■□□□□ 0.45
TRIM28-206ENST00000595974 FSCN2O14926 492 aa17.86■□□□□ 0.45
TRIM28-206ENST00000595974 PLCG1P19174 1290 aa17.86■□□□□ 0.45
TRIM28-206ENST00000595974 KCNA5P22460 613 aa17.86■□□□□ 0.45
TRIM28-206ENST00000595974 MARCKSP29966 332 aaPredicted RBP17.86■□□□□ 0.45
TRIM28-206ENST00000595974 MLH1P40692 756 aa17.86■□□□□ 0.45
TRIM28-206ENST00000595974 KCNQ1P51787 676 aa17.86■□□□□ 0.45
TRIM28-206ENST00000595974 CEBPZQ03701 1054 aaKnown RBP17.86■□□□□ 0.45
TRIM28-206ENST00000595974 KARSQ15046 597 aaKnown RBP17.86■□□□□ 0.45
TRIM28-206ENST00000595974 CDR2LQ86X02 465 aaPredicted RBP17.86■□□□□ 0.45
TRIM28-206ENST00000595974 TMEM169Q96HH4 297 aa17.86■□□□□ 0.45
TRIM28-206ENST00000595974 APOL6Q9BWW8 343 aa17.86■□□□□ 0.45
TRIM28-206ENST00000595974 GBP3Q9H0R5 595 aa17.86■□□□□ 0.45
TRIM28-206ENST00000595974 KMT5AQ9NQR1 393 aa17.86■□□□□ 0.45
TRIM28-206ENST00000595974 ARHGAP28Q9P2N2 729 aa17.86■□□□□ 0.45
TRIM28-206ENST00000595974 KCNG1Q9UIX4 513 aa17.86■□□□□ 0.45
TRIM28-206ENST00000595974 RBM19Q9Y4C8 960 aaKnown RBP17.86■□□□□ 0.45
TRIM28-206ENST00000595974 ARL5CA6NH57 179 aa17.85■□□□□ 0.45
TRIM28-206ENST00000595974 TTLL13PA6NNM8 815 aa17.85■□□□□ 0.45
TRIM28-206ENST00000595974 K7ERI5 159 aa17.85■□□□□ 0.45
TRIM28-206ENST00000595974 EDN1P05305 212 aa17.85■□□□□ 0.45
TRIM28-206ENST00000595974 LIG1P18858 919 aa17.85■□□□□ 0.45
TRIM28-206ENST00000595974 TXLNAP40222 546 aa17.85■□□□□ 0.45
TRIM28-206ENST00000595974 NASPP49321 788 aaPredicted RBP17.85■□□□□ 0.45
TRIM28-206ENST00000595974 SLC39A14Q15043 492 aa17.85■□□□□ 0.45
TRIM28-206ENST00000595974 CTC1Q2NKJ3 1217 aa17.85■□□□□ 0.45
TRIM28-206ENST00000595974 DCAF4L1Q3SXM0 396 aa17.85■□□□□ 0.45
TRIM28-206ENST00000595974 LEXMQ3ZCV2 418 aa17.85■□□□□ 0.45
TRIM28-206ENST00000595974 ADGRD2Q7Z7M1 963 aa17.85■□□□□ 0.45
TRIM28-206ENST00000595974 MICAL1Q8TDZ2 1067 aa17.85■□□□□ 0.45
TRIM28-206ENST00000595974 SPIRE2Q8WWL2 714 aa17.85■□□□□ 0.45
TRIM28-206ENST00000595974 FAM193BQ96PV7 902 aaPredicted RBP17.85■□□□□ 0.45
TRIM28-206ENST00000595974 GAD1Q99259 594 aa17.85■□□□□ 0.45
TRIM28-206ENST00000595974 TMEM175Q9BSA9 504 aa17.85■□□□□ 0.45
TRIM28-206ENST00000595974 RNF39Q9H2S5 420 aa17.85■□□□□ 0.45
TRIM28-206ENST00000595974 TMEM134Q9H6X4 195 aa17.85■□□□□ 0.45
TRIM28-206ENST00000595974 NGRNQ9NPE2 291 aaKnown RBP17.85■□□□□ 0.45
TRIM28-206ENST00000595974 BLOC1S4Q9NUP1 217 aa17.85■□□□□ 0.45
TRIM28-206ENST00000595974 CLDND1Q9NY35 253 aa17.85■□□□□ 0.45
TRIM28-206ENST00000595974 ODF2LQ9ULJ1 636 aa17.85■□□□□ 0.45
TRIM28-206ENST00000595974 NT5C1B-RDH14C9J2C7 533 aa17.84■□□□□ 0.45
TRIM28-206ENST00000595974 POMCP01189 267 aa17.84■□□□□ 0.45
TRIM28-206ENST00000595974 GALTP07902 379 aa17.84■□□□□ 0.45
TRIM28-206ENST00000595974 BMP1P13497 986 aa17.84■□□□□ 0.45
TRIM28-206ENST00000595974 PLS3P13797 630 aa17.84■□□□□ 0.45
TRIM28-206ENST00000595974 SLC11A1P49279 550 aa17.84■□□□□ 0.45
TRIM28-206ENST00000595974 AFF1P51825 1210 aaKnown RBP17.84■□□□□ 0.45
TRIM28-206ENST00000595974 ERVFC1P60507 584 aa17.84■□□□□ 0.45
TRIM28-206ENST00000595974 RAD51AP2Q09MP3 1159 aa17.84■□□□□ 0.45
TRIM28-206ENST00000595974 ATF7IP2Q5U623 682 aa17.84■□□□□ 0.45
TRIM28-206ENST00000595974 APBB1IPQ7Z5R6 666 aaPredicted RBP17.84■□□□□ 0.45
TRIM28-206ENST00000595974 GPBP1Q86WP2 473 aa17.84■□□□□ 0.45
TRIM28-206ENST00000595974 ZNF280BQ86YH2 543 aa17.84■□□□□ 0.45
TRIM28-206ENST00000595974 ADAMTS19Q8TE59 1207 aa17.84■□□□□ 0.45
TRIM28-206ENST00000595974 LRRC15Q8TF66 581 aa17.84■□□□□ 0.45
TRIM28-206ENST00000595974 LARP4BQ92615 738 aaKnown RBP17.84■□□□□ 0.45
TRIM28-206ENST00000595974 RAD54LQ92698 747 aa17.84■□□□□ 0.45
TRIM28-206ENST00000595974 IGSF21Q96ID5 467 aa17.84■□□□□ 0.45
TRIM28-206ENST00000595974 ZNF396Q96N95 335 aaPredicted RBP17.84■□□□□ 0.45
TRIM28-206ENST00000595974 TCF25Q9BQ70 676 aa17.84■□□□□ 0.45
TRIM28-206ENST00000595974 NTPCRQ9BSD7 190 aaKnown RBP17.84■□□□□ 0.45
TRIM28-206ENST00000595974 ENTPD7Q9NQZ7 604 aa17.84■□□□□ 0.45
TRIM28-206ENST00000595974 LARSQ9P2J5 1176 aaKnown RBP17.84■□□□□ 0.45
TRIM28-206ENST00000595974 DNAJB4Q9UDY4 337 aa17.84■□□□□ 0.45
TRIM28-206ENST00000595974 PCDHGC5Q9Y5F6 944 aa17.84■□□□□ 0.45
TRIM28-206ENST00000595974 B4GALT3O60512 393 aa17.83■□□□□ 0.44
TRIM28-206ENST00000595974 DDHD2O94830 711 aa17.83■□□□□ 0.44
TRIM28-206ENST00000595974 ZSCAN22P10073 491 aaPredicted RBP17.83■□□□□ 0.44
TRIM28-206ENST00000595974 NRIP1P48552 1158 aa17.83■□□□□ 0.44
TRIM28-206ENST00000595974 SCNN1GP51170 649 aa17.83■□□□□ 0.44
TRIM28-206ENST00000595974 SMTNP53814 917 aa17.83■□□□□ 0.44
TRIM28-206ENST00000595974 ARSHQ5FYA8 562 aa17.83■□□□□ 0.44
TRIM28-206ENST00000595974 PLPP4Q5VZY2 271 aa17.83■□□□□ 0.44
TRIM28-206ENST00000595974 EEF1DP3Q658K8 133 aa17.83■□□□□ 0.44
TRIM28-206ENST00000595974 EP400NLQ6ZTU2 488 aa17.83■□□□□ 0.44
TRIM28-206ENST00000595974 TMEM173Q86WV6 379 aaPredicted RBP17.83■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms