RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 KRT71Q3SY84 523 aa14.54□□□□□ -0.08
SHMT2-222ENST00000555774 PROCA1Q8NCQ7 364 aaPredicted RBP14.54□□□□□ -0.08
SHMT2-222ENST00000555774 EPS8L1Q8TE68 723 aa14.54□□□□□ -0.08
SHMT2-222ENST00000555774 TLCD1Q96CP7 247 aa14.54□□□□□ -0.08
SHMT2-222ENST00000555774 AGBL1Q96MI9 1066 aa14.54□□□□□ -0.08
SHMT2-222ENST00000555774 PSMD1Q99460 953 aa14.54□□□□□ -0.08
SHMT2-222ENST00000555774 TMEM117Q9H0C3 514 aa14.54□□□□□ -0.08
SHMT2-222ENST00000555774 ERVK-5Q9HDB9 667 aa14.54□□□□□ -0.08
SHMT2-222ENST00000555774 COL20A1Q9P218 1284 aa14.54□□□□□ -0.08
SHMT2-222ENST00000555774 WDR46O15213 610 aaKnown RBP14.53□□□□□ -0.08
SHMT2-222ENST00000555774 TRAPPC3O43617 180 aa14.53□□□□□ -0.08
SHMT2-222ENST00000555774 FSBPO95073 299 aa14.53□□□□□ -0.08
SHMT2-222ENST00000555774 CYP1A2P05177 515 aa14.53□□□□□ -0.08
SHMT2-222ENST00000555774 DRP2Q13474 957 aa14.53□□□□□ -0.08
SHMT2-222ENST00000555774 CYP1B1Q16678 543 aa14.53□□□□□ -0.08
SHMT2-222ENST00000555774 ODF2Q5BJF6 829 aa14.53□□□□□ -0.08
SHMT2-222ENST00000555774 PRPF38AQ8NAV1 312 aaKnown RBP14.53□□□□□ -0.08
SHMT2-222ENST00000555774 LPAR1Q92633 364 aa14.53□□□□□ -0.08
SHMT2-222ENST00000555774 PABPC3Q9H361 631 aaKnown RBP14.53□□□□□ -0.08
SHMT2-222ENST00000555774 ANKEF1Q9NU02 776 aa14.53□□□□□ -0.08
SHMT2-222ENST00000555774 NOVA2Q9UNW9 492 aaKnown RBP14.53□□□□□ -0.08
SHMT2-222ENST00000555774 COQ4Q9Y3A0 265 aa14.53□□□□□ -0.08
SHMT2-222ENST00000555774 ALAS1P13196 640 aa14.53□□□□□ -0.08
SHMT2-222ENST00000555774 CHRNB2P17787 502 aa14.53□□□□□ -0.08
SHMT2-222ENST00000555774 SFNP31947 248 aa14.53□□□□□ -0.08
SHMT2-222ENST00000555774 LIG3P49916 1009 aa14.53□□□□□ -0.08
SHMT2-222ENST00000555774 PEX5P50542 639 aa14.53□□□□□ -0.08
SHMT2-222ENST00000555774 PMS2P54278 862 aa14.53□□□□□ -0.08
SHMT2-222ENST00000555774 ZNF211Q13398 564 aaPredicted RBP14.53□□□□□ -0.08
SHMT2-222ENST00000555774 MTMR1Q13613 665 aa14.53□□□□□ -0.08
SHMT2-222ENST00000555774 RASA3Q14644 834 aa14.53□□□□□ -0.08
SHMT2-222ENST00000555774 SHC3Q92529 594 aa14.53□□□□□ -0.08
SHMT2-222ENST00000555774 CD101Q93033 1021 aa14.53□□□□□ -0.08
SHMT2-222ENST00000555774 CENPTQ96BT3 561 aa14.53□□□□□ -0.08
SHMT2-222ENST00000555774 TMOD4Q9NZQ9 345 aa14.53□□□□□ -0.08
SHMT2-222ENST00000555774 BCCIPQ9P287 314 aaKnown RBP eCLIP14.53□□□□□ -0.08
SHMT2-222ENST00000555774 UVRAGQ9P2Y5 699 aa14.53□□□□□ -0.08
SHMT2-222ENST00000555774 CNOT7Q9UIV1 285 aaKnown RBP14.53□□□□□ -0.08
SHMT2-222ENST00000555774 GTF3C4Q9UKN8 822 aa14.53□□□□□ -0.08
SHMT2-222ENST00000555774 MTUS1Q9ULD2 1270 aa14.53□□□□□ -0.08
SHMT2-222ENST00000555774 ATP8A1Q9Y2Q0 1164 aa14.53□□□□□ -0.08
SHMT2-222ENST00000555774 MYH11P35749 1972 aa14.53□□□□□ -0.08
SHMT2-222ENST00000555774 SMCHD1A6NHR9 2005 aa14.52□□□□□ -0.08
SHMT2-222ENST00000555774 C5orf60A6NFR6 353 aa14.52□□□□□ -0.08
SHMT2-222ENST00000555774 COMTP21964 271 aa14.52□□□□□ -0.08
SHMT2-222ENST00000555774 GTF2H1P32780 548 aa14.52□□□□□ -0.08
SHMT2-222ENST00000555774 SEC24CP53992 1094 aa14.52□□□□□ -0.08
SHMT2-222ENST00000555774 PSMC5P62195 406 aa14.52□□□□□ -0.08
SHMT2-222ENST00000555774 BYSLQ13895 437 aaKnown RBP14.52□□□□□ -0.08
SHMT2-222ENST00000555774 ZDHHC24Q6UX98 284 aa14.52□□□□□ -0.08
SHMT2-222ENST00000555774 MAEAQ7L5Y9 396 aa14.52□□□□□ -0.08
SHMT2-222ENST00000555774 USP37Q86T82 979 aa14.52□□□□□ -0.08
SHMT2-222ENST00000555774 RTKN2Q8IZC4 609 aa14.52□□□□□ -0.08
SHMT2-222ENST00000555774 PRELID2Q8N945 189 aa14.52□□□□□ -0.08
SHMT2-222ENST00000555774 RDM1Q8NG50 284 aa14.52□□□□□ -0.08
SHMT2-222ENST00000555774 IL31RAQ8NI17 732 aa14.52□□□□□ -0.08
SHMT2-222ENST00000555774 PLEKHO2Q8TD55 490 aa14.52□□□□□ -0.08
SHMT2-222ENST00000555774 CYFIP2Q96F07 1278 aa14.52□□□□□ -0.08
SHMT2-222ENST00000555774 PGM2Q96G03 612 aa14.52□□□□□ -0.08
SHMT2-222ENST00000555774 PCDHB18PQ96TA0 734 aa14.52□□□□□ -0.08
SHMT2-222ENST00000555774 TRIM31Q9BZY9 425 aa14.52□□□□□ -0.08
SHMT2-222ENST00000555774 MTRF1LQ9UGC7 380 aaKnown RBP14.52□□□□□ -0.08
SHMT2-222ENST00000555774 ASTN2O75129 1339 aaPredicted RBP14.52□□□□□ -0.09
SHMT2-222ENST00000555774 CCDC169A6NNP5 214 aa14.52□□□□□ -0.09
SHMT2-222ENST00000555774 TISP43B9A030 160 aa14.52□□□□□ -0.09
SHMT2-222ENST00000555774 NFIBO00712 420 aa14.52□□□□□ -0.09
SHMT2-222ENST00000555774 SGPL1O95470 568 aa14.52□□□□□ -0.09
SHMT2-222ENST00000555774 GPC3P51654 580 aa14.52□□□□□ -0.09
SHMT2-222ENST00000555774 MAGOHP61326 146 aaKnown RBP14.52□□□□□ -0.09
SHMT2-222ENST00000555774 PLCB4Q15147 1175 aa14.52□□□□□ -0.09
SHMT2-222ENST00000555774 DENND2CQ68D51 928 aa14.52□□□□□ -0.09
SHMT2-222ENST00000555774 KRT39Q6A163 491 aa14.52□□□□□ -0.09
SHMT2-222ENST00000555774 NOP9Q86U38 636 aaKnown RBP14.52□□□□□ -0.09
SHMT2-222ENST00000555774 MAP4K3Q8IVH8 894 aa14.52□□□□□ -0.09
SHMT2-222ENST00000555774 TMC2Q8TDI7 906 aa14.52□□□□□ -0.09
SHMT2-222ENST00000555774 SYTL5Q8TDW5 730 aaPredicted RBP14.52□□□□□ -0.09
SHMT2-222ENST00000555774 MAGOHBQ96A72 148 aaKnown RBP14.52□□□□□ -0.09
SHMT2-222ENST00000555774 TMEM109Q9BVC6 243 aa14.52□□□□□ -0.09
SHMT2-222ENST00000555774 TAOK3Q9H2K8 898 aa14.52□□□□□ -0.09
SHMT2-222ENST00000555774 VEZTQ9HBM0 779 aa14.52□□□□□ -0.09
SHMT2-222ENST00000555774 TMEM8AQ9HCN3 771 aa14.52□□□□□ -0.09
SHMT2-222ENST00000555774 GINM1Q9NU53 330 aa14.52□□□□□ -0.09
SHMT2-222ENST00000555774 PKD2L1Q9P0L9 805 aa14.52□□□□□ -0.09
SHMT2-222ENST00000555774 WDR64B1ANS9 1081 aa14.51□□□□□ -0.09
SHMT2-222ENST00000555774 FNTAP49354 379 aa14.51□□□□□ -0.09
SHMT2-222ENST00000555774 SMTNP53814 917 aa14.51□□□□□ -0.09
SHMT2-222ENST00000555774 MRPS9P82933 396 aaKnown RBP14.51□□□□□ -0.09
SHMT2-222ENST00000555774 KRT76Q01546 638 aa14.51□□□□□ -0.09
SHMT2-222ENST00000555774 C6orf89Q6UWU4 347 aa14.51□□□□□ -0.09
SHMT2-222ENST00000555774 CYFIP1Q7L576 1253 aa14.51□□□□□ -0.09
SHMT2-222ENST00000555774 C12orf50Q8NA57 414 aaPredicted RBP14.51□□□□□ -0.09
SHMT2-222ENST00000555774 ZNF564Q8TBZ8 553 aaPredicted RBP14.51□□□□□ -0.09
SHMT2-222ENST00000555774 KRT35Q92764 455 aa14.51□□□□□ -0.09
SHMT2-222ENST00000555774 KIFAP3Q92845 792 aa14.51□□□□□ -0.09
SHMT2-222ENST00000555774 GLG1Q92896 1179 aa14.51□□□□□ -0.09
SHMT2-222ENST00000555774 FAM81BQ96LP2 452 aa14.51□□□□□ -0.09
SHMT2-222ENST00000555774 KREMEN1Q96MU8 473 aa14.51□□□□□ -0.09
SHMT2-222ENST00000555774 GLIS2Q9BZE0 524 aaPredicted RBP14.51□□□□□ -0.09
SHMT2-222ENST00000555774 TMEM39BQ9GZU3 492 aa14.51□□□□□ -0.09
SHMT2-222ENST00000555774 VPS33BQ9H267 617 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms