RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 C19orf81C9J6K1 198 aa20.03■□□□□ 0.8
PRPF40B-208ENST00000548436 TULP1O00294 542 aaPredicted RBP20.03■□□□□ 0.8
PRPF40B-208ENST00000548436 DDX3YO15523 660 aaKnown RBP20.03■□□□□ 0.8
PRPF40B-208ENST00000548436 SORBS3O60504 671 aa20.03■□□□□ 0.8
PRPF40B-208ENST00000548436 ERVK-9P63128 1117 aa20.03■□□□□ 0.8
PRPF40B-208ENST00000548436 ALS2CLQ60I27 953 aa20.03■□□□□ 0.8
PRPF40B-208ENST00000548436 CCDC60Q8IWA6 550 aaPredicted RBP20.03■□□□□ 0.8
PRPF40B-208ENST00000548436 RPUSD2Q8IZ73 545 aaKnown RBP20.03■□□□□ 0.8
PRPF40B-208ENST00000548436 SPIRE2Q8WWL2 714 aa20.03■□□□□ 0.8
PRPF40B-208ENST00000548436 KIFAP3Q92845 792 aa20.03■□□□□ 0.8
PRPF40B-208ENST00000548436 ATP6V0A1Q93050 837 aa20.03■□□□□ 0.8
PRPF40B-208ENST00000548436 KLRG1Q96E93 195 aa20.03■□□□□ 0.8
PRPF40B-208ENST00000548436 DDX47Q9H0S4 455 aaKnown RBP20.03■□□□□ 0.8
PRPF40B-208ENST00000548436 PDLIM7Q9NR12 457 aa20.03■□□□□ 0.8
PRPF40B-208ENST00000548436 KRIT1O00522 736 aa20.03■□□□□ 0.8
PRPF40B-208ENST00000548436 SART1O43290 800 aaKnown RBP20.03■□□□□ 0.8
PRPF40B-208ENST00000548436 SGPL1O95470 568 aa20.03■□□□□ 0.8
PRPF40B-208ENST00000548436 FTLP02792 175 aaPredicted RBP20.03■□□□□ 0.8
PRPF40B-208ENST00000548436 USP8P40818 1118 aa20.03■□□□□ 0.8
PRPF40B-208ENST00000548436 GUCY2FP51841 1108 aa20.03■□□□□ 0.8
PRPF40B-208ENST00000548436 DCAF12L1Q5VU92 463 aa20.03■□□□□ 0.8
PRPF40B-208ENST00000548436 APOBEC3FQ8IUX4 373 aaKnown RBP20.03■□□□□ 0.8
PRPF40B-208ENST00000548436 ISCUQ9H1K1 167 aa20.03■□□□□ 0.8
PRPF40B-208ENST00000548436 JPH1Q9HDC5 661 aaPredicted RBP20.03■□□□□ 0.8
PRPF40B-208ENST00000548436 WDR90Q96KV7 1748 aa20.02■□□□□ 0.8
PRPF40B-208ENST00000548436 ATP2A1O14983 1001 aa20.02■□□□□ 0.8
PRPF40B-208ENST00000548436 PSAPP07602 524 aa20.02■□□□□ 0.8
PRPF40B-208ENST00000548436 CHRNB2P17787 502 aa20.02■□□□□ 0.8
PRPF40B-208ENST00000548436 ACTN2P35609 894 aa20.02■□□□□ 0.8
PRPF40B-208ENST00000548436 FAM71AQ8IYT1 594 aa20.02■□□□□ 0.8
PRPF40B-208ENST00000548436 PPM1KQ8N3J5 372 aa20.02■□□□□ 0.8
PRPF40B-208ENST00000548436 GOLGA6L1Q8N7Z2 621 aa20.02■□□□□ 0.8
PRPF40B-208ENST00000548436 ZIM3Q96PE6 472 aa20.02■□□□□ 0.8
PRPF40B-208ENST00000548436 PCDHB18PQ96TA0 734 aa20.02■□□□□ 0.8
PRPF40B-208ENST00000548436 TEX13BQ9BXU2 312 aa20.02■□□□□ 0.8
PRPF40B-208ENST00000548436 ACP6Q9NPH0 428 aa20.02■□□□□ 0.8
PRPF40B-208ENST00000548436 XPNPEP1Q9NQW7 623 aa20.02■□□□□ 0.8
PRPF40B-208ENST00000548436 TOPORSQ9NS56 1045 aaPredicted RBP20.02■□□□□ 0.8
PRPF40B-208ENST00000548436 SLC9A2Q9UBY0 812 aa20.02■□□□□ 0.8
PRPF40B-208ENST00000548436 LOC285556D6RIA3 1793 aa20.02■□□□□ 0.79
PRPF40B-208ENST00000548436 NFASCO94856 1347 aa20.01■□□□□ 0.79
PRPF40B-208ENST00000548436 BHMG1C9JSJ3 638 aaPredicted RBP20.01■□□□□ 0.79
PRPF40B-208ENST00000548436 HSF2BPO75031 334 aa20.01■□□□□ 0.79
PRPF40B-208ENST00000548436 ACTR2P61160 394 aa20.01■□□□□ 0.79
PRPF40B-208ENST00000548436 ZSCAN26Q16670 478 aa20.01■□□□□ 0.79
PRPF40B-208ENST00000548436 KCTD19Q17RG1 926 aaPredicted RBP20.01■□□□□ 0.79
PRPF40B-208ENST00000548436 KRT39Q6A163 491 aa20.01■□□□□ 0.79
PRPF40B-208ENST00000548436 NOP9Q86U38 636 aaKnown RBP20.01■□□□□ 0.79
PRPF40B-208ENST00000548436 EPS8L1Q8TE68 723 aa20.01■□□□□ 0.79
PRPF40B-208ENST00000548436 FBXL18Q96ME1 805 aa20.01■□□□□ 0.79
PRPF40B-208ENST00000548436 ACAD9Q9H845 621 aa20.01■□□□□ 0.79
PRPF40B-208ENST00000548436 C17orf75Q9HAS0 396 aa20.01■□□□□ 0.79
PRPF40B-208ENST00000548436 SEPT9Q9UHD8 586 aaPredicted RBP20.01■□□□□ 0.79
PRPF40B-208ENST00000548436 NOCTQ9UK39 431 aaKnown RBP20.01■□□□□ 0.79
PRPF40B-208ENST00000548436 SSC5DA1L4H1 1573 aa20.01■□□□□ 0.79
PRPF40B-208ENST00000548436 CCDC188H7C350 402 aa20.01■□□□□ 0.79
PRPF40B-208ENST00000548436 PRKCEQ02156 737 aa20.01■□□□□ 0.79
PRPF40B-208ENST00000548436 ABHD15Q6UXT9 468 aa20.01■□□□□ 0.79
PRPF40B-208ENST00000548436 MFSD14AQ96MC6 490 aa20.01■□□□□ 0.79
PRPF40B-208ENST00000548436 TAF1DQ9H5J8 278 aaPredicted RBP20.01■□□□□ 0.79
PRPF40B-208ENST00000548436 COQ4Q9Y3A0 265 aa20.01■□□□□ 0.79
PRPF40B-208ENST00000548436 GOLGA6CA6NDK9 693 aa20■□□□□ 0.79
PRPF40B-208ENST00000548436 SPDYE16A6NNV3 312 aaPredicted RBP20■□□□□ 0.79
PRPF40B-208ENST00000548436 SPATA31C2B4DYI2 1134 aa20■□□□□ 0.79
PRPF40B-208ENST00000548436 CYP26A1O43174 497 aa20■□□□□ 0.79
PRPF40B-208ENST00000548436 DGAT1O75907 488 aa20■□□□□ 0.79
PRPF40B-208ENST00000548436 GOLGA6DP0CG33 693 aa20■□□□□ 0.79
PRPF40B-208ENST00000548436 ECHS1P30084 290 aa20■□□□□ 0.79
PRPF40B-208ENST00000548436 HADHBP55084 474 aaKnown RBP20■□□□□ 0.79
PRPF40B-208ENST00000548436 TAF3Q5VWG9 929 aa20■□□□□ 0.79
PRPF40B-208ENST00000548436 TAS1R3Q7RTX0 852 aa20■□□□□ 0.79
PRPF40B-208ENST00000548436 SLC47A2Q86VL8 602 aa20■□□□□ 0.79
PRPF40B-208ENST00000548436 IQCKQ8N0W5 287 aa20■□□□□ 0.79
PRPF40B-208ENST00000548436 MREGQ8N565 214 aa20■□□□□ 0.79
PRPF40B-208ENST00000548436 POMGNT1Q8WZA1 660 aa20■□□□□ 0.79
PRPF40B-208ENST00000548436 SHC3Q92529 594 aa20■□□□□ 0.79
PRPF40B-208ENST00000548436 ELMO3Q96BJ8 720 aa20■□□□□ 0.79
PRPF40B-208ENST00000548436 TMEM8AQ9HCN3 771 aa20■□□□□ 0.79
PRPF40B-208ENST00000548436 CYP26B1Q9NR63 512 aa20■□□□□ 0.79
PRPF40B-208ENST00000548436 GOLGA6AQ9NYA3 693 aa20■□□□□ 0.79
PRPF40B-208ENST00000548436 CALCOCO1Q9P1Z2 691 aa20■□□□□ 0.79
PRPF40B-208ENST00000548436 TTC7AQ9ULT0 858 aaPredicted RBP20■□□□□ 0.79
PRPF40B-208ENST00000548436 DKC1O60832 514 aaKnown RBP eCLIP19.99■□□□□ 0.79
PRPF40B-208ENST00000548436 GPC3P51654 580 aa19.99■□□□□ 0.79
PRPF40B-208ENST00000548436 SP2Q02086 613 aa19.99■□□□□ 0.79
PRPF40B-208ENST00000548436 DDX42Q86XP3 938 aaKnown RBP eCLIP19.99■□□□□ 0.79
PRPF40B-208ENST00000548436 RHOT2Q8IXI1 618 aa19.99■□□□□ 0.79
PRPF40B-208ENST00000548436 HELQQ8TDG4 1101 aa19.99■□□□□ 0.79
PRPF40B-208ENST00000548436 TAS1R2Q8TE23 839 aa19.99■□□□□ 0.79
PRPF40B-208ENST00000548436 WHAMMQ8TF30 809 aa19.99■□□□□ 0.79
PRPF40B-208ENST00000548436 PIK3R5Q8WYR1 880 aa19.99■□□□□ 0.79
PRPF40B-208ENST00000548436 ARL8AQ96BM9 186 aa19.99■□□□□ 0.79
PRPF40B-208ENST00000548436 GGA3Q9NZ52 723 aa19.99■□□□□ 0.79
PRPF40B-208ENST00000548436 TMOD4Q9NZQ9 345 aa19.99■□□□□ 0.79
PRPF40B-208ENST00000548436 AMACRQ9UHK6 382 aa19.99■□□□□ 0.79
PRPF40B-208ENST00000548436 NR2E1Q9Y466 385 aa19.99■□□□□ 0.79
PRPF40B-208ENST00000548436 AFG3L2Q9Y4W6 797 aa19.99■□□□□ 0.79
PRPF40B-208ENST00000548436 GOLGA8KD6RF30 607 aa19.99■□□□□ 0.79
PRPF40B-208ENST00000548436 OPA1O60313 960 aa19.99■□□□□ 0.79
PRPF40B-208ENST00000548436 RTN2O75298 545 aa19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms