RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	DDX23	Q9BUQ8	820 aa	Known RBP	13.93	□□□□□ -0.18
CAPN1-223	ENST00000533079	PRKD2	Q9BZL6	878 aa		13.93	□□□□□ -0.18
CAPN1-223	ENST00000533079	NT5C3A	Q9H0P0	336 aa		13.93	□□□□□ -0.18
CAPN1-223	ENST00000533079	IFT122	Q9HBG6	1241 aa		13.93	□□□□□ -0.18
CAPN1-223	ENST00000533079	FNIP2	Q9P278	1114 aa		13.93	□□□□□ -0.18
CAPN1-223	ENST00000533079	BRPF3	Q9ULD4	1205 aa		13.93	□□□□□ -0.18
CAPN1-223	ENST00000533079	MIA3	Q5JRA6	1907 aa		13.93	□□□□□ -0.18
CAPN1-223	ENST00000533079	KLF18	A0A0U1RQI7	1052 aa		13.92	□□□□□ -0.18
CAPN1-223	ENST00000533079	POTEM	A6NI47	508 aa		13.92	□□□□□ -0.18
CAPN1-223	ENST00000533079	PSMD10	O75832	226 aa		13.92	□□□□□ -0.18
CAPN1-223	ENST00000533079	GLUL	P15104	373 aa		13.92	□□□□□ -0.18
CAPN1-223	ENST00000533079	CDC27	P30260	824 aa		13.92	□□□□□ -0.18
CAPN1-223	ENST00000533079	PFKP	Q01813	784 aa		13.92	□□□□□ -0.18
CAPN1-223	ENST00000533079	POTEG	Q6S5H5	508 aa		13.92	□□□□□ -0.18
CAPN1-223	ENST00000533079	DHX32	Q7L7V1	743 aa	Known RBP	13.92	□□□□□ -0.18
CAPN1-223	ENST00000533079	MIER3	Q7Z3K6	550 aa		13.92	□□□□□ -0.18
CAPN1-223	ENST00000533079	COLGALT2	Q8IYK4	626 aa		13.92	□□□□□ -0.18
CAPN1-223	ENST00000533079	DCLK2	Q8N568	766 aa		13.92	□□□□□ -0.18
CAPN1-223	ENST00000533079	SLC7A3	Q8WY07	619 aa		13.92	□□□□□ -0.18
CAPN1-223	ENST00000533079	ESYT1	Q9BSJ8	1104 aa		13.92	□□□□□ -0.18
CAPN1-223	ENST00000533079	C22orf23	Q9BZE7	217 aa		13.92	□□□□□ -0.18
CAPN1-223	ENST00000533079	FOXQ1	Q9C009	403 aa		13.92	□□□□□ -0.18
CAPN1-223	ENST00000533079	EPC1	Q9H2F5	836 aa		13.92	□□□□□ -0.18
CAPN1-223	ENST00000533079	CHST7	Q9NS84	486 aa		13.92	□□□□□ -0.18
CAPN1-223	ENST00000533079	FAM217B	Q9NTX9	383 aa	Predicted RBP	13.92	□□□□□ -0.18
CAPN1-223	ENST00000533079	CDV3	Q9UKY7	258 aa	Known RBP	13.92	□□□□□ -0.18
CAPN1-223	ENST00000533079	RBM19	Q9Y4C8	960 aa	Known RBP	13.92	□□□□□ -0.18
CAPN1-223	ENST00000533079	COL4A3BP	Q9Y5P4	624 aa		13.92	□□□□□ -0.18
CAPN1-223	ENST00000533079	ZMYM2	Q9UBW7	1377 aa		13.92	□□□□□ -0.18
CAPN1-223	ENST00000533079	OTOGL	Q3ZCN5	2332 aa		13.92	□□□□□ -0.18
CAPN1-223	ENST00000533079	TGM5	O43548	720 aa		13.91	□□□□□ -0.18
CAPN1-223	ENST00000533079	GAS2	O43903	313 aa	Known RBP	13.91	□□□□□ -0.18
CAPN1-223	ENST00000533079	DKC1	O60832	514 aa	Known RBP eCLIP	13.91	□□□□□ -0.18
CAPN1-223	ENST00000533079	KRT37	O76014	449 aa		13.91	□□□□□ -0.18
CAPN1-223	ENST00000533079	STBD1	O95210	358 aa		13.91	□□□□□ -0.18
CAPN1-223	ENST00000533079	POMC	P01189	267 aa		13.91	□□□□□ -0.18
CAPN1-223	ENST00000533079	OR1G1	P47890	313 aa		13.91	□□□□□ -0.18
CAPN1-223	ENST00000533079	EXOSC10	Q01780	885 aa	Known RBP	13.91	□□□□□ -0.18
CAPN1-223	ENST00000533079	DSC1	Q08554	894 aa		13.91	□□□□□ -0.18
CAPN1-223	ENST00000533079		Q4G0T1	1027 aa		13.91	□□□□□ -0.18
CAPN1-223	ENST00000533079	B3GNT9	Q6UX72	402 aa		13.91	□□□□□ -0.18
CAPN1-223	ENST00000533079	ZBTB44	Q8NCP5	570 aa		13.91	□□□□□ -0.18
CAPN1-223	ENST00000533079	CCDC51	Q96ER9	411 aa		13.91	□□□□□ -0.18
CAPN1-223	ENST00000533079	RTKN	Q9BST9	563 aa		13.91	□□□□□ -0.18
CAPN1-223	ENST00000533079	ANO2	Q9NQ90	1003 aa		13.91	□□□□□ -0.18
CAPN1-223	ENST00000533079	SPATA6	Q9NWH7	488 aa	Predicted RBP	13.91	□□□□□ -0.18
CAPN1-223	ENST00000533079	SMG5	Q9UPR3	1016 aa	Known RBP	13.91	□□□□□ -0.18
CAPN1-223	ENST00000533079	PRG3	Q9Y2Y8	225 aa	Predicted RBP	13.91	□□□□□ -0.18
CAPN1-223	ENST00000533079	EP300	Q09472	2414 aa	Predicted RBP	13.91	□□□□□ -0.18
CAPN1-223	ENST00000533079	NCOR2	Q9Y618	2525 aa		13.9	□□□□□ -0.18
CAPN1-223	ENST00000533079	HMGB1	P09429	215 aa	Known RBP	13.9	□□□□□ -0.18
CAPN1-223	ENST00000533079	HNRNPA1	P09651	372 aa	Known RBP eCLIP	13.9	□□□□□ -0.18
CAPN1-223	ENST00000533079	ITGA4	P13612	1032 aa		13.9	□□□□□ -0.18
CAPN1-223	ENST00000533079	FSHR	P23945	695 aa		13.9	□□□□□ -0.18
CAPN1-223	ENST00000533079	AXL	P30530	894 aa		13.9	□□□□□ -0.18
CAPN1-223	ENST00000533079	HOXA9	P31269	272 aa		13.9	□□□□□ -0.18
CAPN1-223	ENST00000533079	HOXA11	P31270	313 aa	Predicted RBP	13.9	□□□□□ -0.18
CAPN1-223	ENST00000533079	AFF1	P51825	1210 aa	Known RBP	13.9	□□□□□ -0.18
CAPN1-223	ENST00000533079	PSMC5	P62195	406 aa		13.9	□□□□□ -0.18
CAPN1-223	ENST00000533079	KRT32	Q14532	448 aa		13.9	□□□□□ -0.18
CAPN1-223	ENST00000533079	MLF2	Q15773	248 aa	Predicted RBP	13.9	□□□□□ -0.18
CAPN1-223	ENST00000533079	USP41	Q3LFD5	358 aa		13.9	□□□□□ -0.18
CAPN1-223	ENST00000533079	UBXN11	Q5T124	520 aa		13.9	□□□□□ -0.18
CAPN1-223	ENST00000533079	HACE1	Q8IYU2	909 aa		13.9	□□□□□ -0.18
CAPN1-223	ENST00000533079	ATRIP	Q8WXE1	791 aa		13.9	□□□□□ -0.18
CAPN1-223	ENST00000533079	PSPC1	Q8WXF1	523 aa	Known RBP	13.9	□□□□□ -0.18
CAPN1-223	ENST00000533079	MBOAT7	Q96N66	472 aa		13.9	□□□□□ -0.18
CAPN1-223	ENST00000533079	FAM126A	Q9BYI3	521 aa	Predicted RBP	13.9	□□□□□ -0.18
CAPN1-223	ENST00000533079	BACH2	Q9BYV9	841 aa		13.9	□□□□□ -0.18
CAPN1-223	ENST00000533079	CDH7	Q9ULB5	785 aa		13.9	□□□□□ -0.18
CAPN1-223	ENST00000533079	DOCK8	Q8NF50	2099 aa		13.9	□□□□□ -0.18
CAPN1-223	ENST00000533079	MYH15	Q9Y2K3	1946 aa		13.9	□□□□□ -0.18
CAPN1-223	ENST00000533079	TMEM150B	A6NC51	233 aa		13.89	□□□□□ -0.19
CAPN1-223	ENST00000533079	ARL5C	A6NH57	179 aa		13.89	□□□□□ -0.19
CAPN1-223	ENST00000533079	ADAMTS3	O15072	1205 aa		13.89	□□□□□ -0.19
CAPN1-223	ENST00000533079	PRPF3	O43395	683 aa	Known RBP	13.89	□□□□□ -0.19
CAPN1-223	ENST00000533079	TBC1D4	O60343	1298 aa		13.89	□□□□□ -0.19
CAPN1-223	ENST00000533079	LILRB5	O75023	590 aa		13.89	□□□□□ -0.19
CAPN1-223	ENST00000533079	ZMYND10	O75800	440 aa		13.89	□□□□□ -0.19
CAPN1-223	ENST00000533079	ERLIN2	O94905	339 aa		13.89	□□□□□ -0.19
CAPN1-223	ENST00000533079	MLH1	P40692	756 aa		13.89	□□□□□ -0.19
CAPN1-223	ENST00000533079	RFC5	P40937	340 aa		13.89	□□□□□ -0.19
CAPN1-223	ENST00000533079	ATXN1	P54253	815 aa	Known RBP	13.89	□□□□□ -0.19
CAPN1-223	ENST00000533079	AKAP17A	Q02040	695 aa	Known RBP	13.89	□□□□□ -0.19
CAPN1-223	ENST00000533079	TSGA10IP	Q3SY00	556 aa		13.89	□□□□□ -0.19
CAPN1-223	ENST00000533079	LILRA6	Q6PI73	481 aa		13.89	□□□□□ -0.19
CAPN1-223	ENST00000533079	MOXD1	Q6UVY6	613 aa		13.89	□□□□□ -0.19
CAPN1-223	ENST00000533079	ANO5	Q75V66	913 aa		13.89	□□□□□ -0.19
CAPN1-223	ENST00000533079	TAS1R1	Q7RTX1	841 aa		13.89	□□□□□ -0.19
CAPN1-223	ENST00000533079	KSR1	Q8IVT5	923 aa		13.89	□□□□□ -0.19
CAPN1-223	ENST00000533079	NELL1	Q92832	810 aa		13.89	□□□□□ -0.19
CAPN1-223	ENST00000533079	FGF14	Q92915	247 aa		13.89	□□□□□ -0.19
CAPN1-223	ENST00000533079	COLEC11	Q9BWP8	271 aa		13.89	□□□□□ -0.19
CAPN1-223	ENST00000533079	RNF26	Q9BY78	433 aa	Predicted RBP	13.89	□□□□□ -0.19
CAPN1-223	ENST00000533079	ZSCAN32	Q9NX65	697 aa		13.89	□□□□□ -0.19
CAPN1-223	ENST00000533079	IPP	Q9Y573	584 aa		13.89	□□□□□ -0.19
CAPN1-223	ENST00000533079	MTCL1	Q9Y4B5	1905 aa	Known RBP	13.89	□□□□□ -0.19
CAPN1-223	ENST00000533079	EPG5	Q9HCE0	2579 aa		13.89	□□□□□ -0.19
CAPN1-223	ENST00000533079	CYP3A7-CYP3A51P	A0A087WV96	503 aa		13.88	□□□□□ -0.19
CAPN1-223	ENST00000533079	DDX11L8	A8MPP1	907 aa		13.88	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms