RNA–Protein interactions for RNA: ENST00000503360.1

HMGB1P35-201, Transcript of high mobility group box 1 pseudogene 35, humanhuman

BASIC

Gene HMGB1P35, Length 598 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P35-201ENST00000503360 BEND2Q8NDZ0 799 aa3.35□□□□□ -1.87
HMGB1P35-201ENST00000503360 GCDHQ92947 438 aaPredicted RBP3.35□□□□□ -1.87
HMGB1P35-201ENST00000503360 PDCD2LQ9BRP1 358 aa3.35□□□□□ -1.87
HMGB1P35-201ENST00000503360 R3HDMLQ9H3Y0 253 aa3.35□□□□□ -1.87
HMGB1P35-201ENST00000503360 EMC7Q9NPA0 242 aa3.35□□□□□ -1.87
HMGB1P35-201ENST00000503360 HOMER2Q9NSB8 354 aa3.35□□□□□ -1.87
HMGB1P35-201ENST00000503360 SPTLC3Q9NUV7 552 aa3.35□□□□□ -1.87
HMGB1P35-201ENST00000503360 SYBUQ9NX95 663 aa3.35□□□□□ -1.87
HMGB1P35-201ENST00000503360 DDX56Q9NY93 547 aaKnown RBP3.35□□□□□ -1.87
HMGB1P35-201ENST00000503360 TMEM200CA6NKL6 621 aa3.34□□□□□ -1.87
HMGB1P35-201ENST00000503360 ALG1L2C9J202 215 aa3.34□□□□□ -1.87
HMGB1P35-201ENST00000503360 GOLGA6L22H0YM25 854 aa3.34□□□□□ -1.87
HMGB1P35-201ENST00000503360 DVL2O14641 736 aa3.34□□□□□ -1.87
HMGB1P35-201ENST00000503360 JUNP05412 331 aaKnown RBP3.34□□□□□ -1.87
HMGB1P35-201ENST00000503360 TYRP1P17643 537 aa3.34□□□□□ -1.87
HMGB1P35-201ENST00000503360 LAG3P18627 525 aa3.34□□□□□ -1.87
HMGB1P35-201ENST00000503360 LSSP48449 732 aa3.34□□□□□ -1.87
HMGB1P35-201ENST00000503360 GUCY2FP51841 1108 aa3.34□□□□□ -1.87
HMGB1P35-201ENST00000503360 NHLH1Q02575 133 aa3.34□□□□□ -1.87
HMGB1P35-201ENST00000503360 TMEM132BQ14DG7 1078 aa3.34□□□□□ -1.87
HMGB1P35-201ENST00000503360 ERCC6LQ2NKX8 1250 aa3.34□□□□□ -1.87
HMGB1P35-201ENST00000503360 ATP13A4Q4VNC1 1196 aa3.34□□□□□ -1.87
HMGB1P35-201ENST00000503360 CREB3L3Q68CJ9 461 aa3.34□□□□□ -1.87
HMGB1P35-201ENST00000503360 KRTAP5-11Q6L8G4 156 aa3.34□□□□□ -1.87
HMGB1P35-201ENST00000503360 SPATS2Q86XZ4 545 aaKnown RBP3.34□□□□□ -1.87
HMGB1P35-201ENST00000503360 PASD1Q8IV76 773 aa3.34□□□□□ -1.87
HMGB1P35-201ENST00000503360 EFHBQ8N7U6 833 aa3.34□□□□□ -1.87
HMGB1P35-201ENST00000503360 KIAA1958Q8N8K9 716 aa3.34□□□□□ -1.87
HMGB1P35-201ENST00000503360 FAM98AQ8NCA5 519 aaKnown RBP3.34□□□□□ -1.87
HMGB1P35-201ENST00000503360 STAG1Q8WVM7 1258 aa3.34□□□□□ -1.87
HMGB1P35-201ENST00000503360 ATXN2LQ8WWM7 1075 aaKnown RBP3.34□□□□□ -1.87
HMGB1P35-201ENST00000503360 ASB15Q8WXK1 588 aa3.34□□□□□ -1.87
HMGB1P35-201ENST00000503360 SLC9A6Q92581 669 aa3.34□□□□□ -1.87
HMGB1P35-201ENST00000503360 DLG3Q92796 817 aa3.34□□□□□ -1.87
HMGB1P35-201ENST00000503360 NKD2Q969F2 451 aaPredicted RBP3.34□□□□□ -1.87
HMGB1P35-201ENST00000503360 ELF4Q99607 663 aaPredicted RBP3.34□□□□□ -1.87
HMGB1P35-201ENST00000503360 BRIP1Q9BX63 1249 aa3.34□□□□□ -1.87
HMGB1P35-201ENST00000503360 SLC46A2Q9BY10 475 aa3.34□□□□□ -1.87
HMGB1P35-201ENST00000503360 PRDM13Q9H4Q3 707 aa3.34□□□□□ -1.87
HMGB1P35-201ENST00000503360 PCIF1Q9H4Z3 704 aa3.34□□□□□ -1.87
HMGB1P35-201ENST00000503360 KCNH7Q9NS40 1196 aa3.34□□□□□ -1.87
HMGB1P35-201ENST00000503360 UCKL1Q9NWZ5 548 aa3.34□□□□□ -1.87
HMGB1P35-201ENST00000503360 SLC5A4Q9NY91 659 aa3.34□□□□□ -1.87
HMGB1P35-201ENST00000503360 SAE1Q9UBE0 346 aaPredicted RBP3.34□□□□□ -1.87
HMGB1P35-201ENST00000503360 APOBEC2Q9Y235 224 aaKnown RBP3.34□□□□□ -1.87
HMGB1P35-201ENST00000503360 SPO11Q9Y5K1 396 aa3.34□□□□□ -1.87
HMGB1P35-201ENST00000503360 B3GALT1Q9Y5Z6 326 aa3.34□□□□□ -1.87
HMGB1P35-201ENST00000503360 PHLDB1Q86UU1 1377 aa3.34□□□□□ -1.88
HMGB1P35-201ENST00000503360 UBE2QL1A1L167 161 aa3.33□□□□□ -1.88
HMGB1P35-201ENST00000503360 C2orf78A6NCI8 922 aa3.33□□□□□ -1.88
HMGB1P35-201ENST00000503360 ZNF185O15231 689 aa3.33□□□□□ -1.88
HMGB1P35-201ENST00000503360 MTSS1O43312 755 aa3.33□□□□□ -1.88
HMGB1P35-201ENST00000503360 TGM5O43548 720 aa3.33□□□□□ -1.88
HMGB1P35-201ENST00000503360 RAB11FIP3O75154 756 aa3.33□□□□□ -1.88
HMGB1P35-201ENST00000503360 KATNA1O75449 491 aa3.33□□□□□ -1.88
HMGB1P35-201ENST00000503360 C1RP00736 705 aa3.33□□□□□ -1.88
HMGB1P35-201ENST00000503360 MMEP08473 750 aa3.33□□□□□ -1.88
HMGB1P35-201ENST00000503360 VSIG10L2P0DP72 767 aa3.33□□□□□ -1.88
HMGB1P35-201ENST00000503360 GYPEP15421 78 aa3.33□□□□□ -1.88
HMGB1P35-201ENST00000503360 ZEB1P37275 1124 aaPredicted RBP3.33□□□□□ -1.88
HMGB1P35-201ENST00000503360 BPIFB4P59827 614 aa3.33□□□□□ -1.88
HMGB1P35-201ENST00000503360 TCIRG1Q13488 830 aa3.33□□□□□ -1.88
HMGB1P35-201ENST00000503360 CC2D1AQ6P1N0 951 aaPredicted RBP3.33□□□□□ -1.88
HMGB1P35-201ENST00000503360 FBXO42Q6P3S6 717 aa3.33□□□□□ -1.88
HMGB1P35-201ENST00000503360 CLEC14AQ86T13 490 aa3.33□□□□□ -1.88
HMGB1P35-201ENST00000503360 ARHGEF19Q8IW93 802 aa3.33□□□□□ -1.88
HMGB1P35-201ENST00000503360 SUPT20HQ8NEM7 779 aa3.33□□□□□ -1.88
HMGB1P35-201ENST00000503360 COG1Q8WTW3 980 aa3.33□□□□□ -1.88
HMGB1P35-201ENST00000503360 ST8SIA2Q92186 375 aa3.33□□□□□ -1.88
HMGB1P35-201ENST00000503360 SLC5A5Q92911 643 aa3.33□□□□□ -1.88
HMGB1P35-201ENST00000503360 FOXB1Q99853 325 aa3.33□□□□□ -1.88
HMGB1P35-201ENST00000503360 ACSS2Q9NR19 701 aa3.33□□□□□ -1.88
HMGB1P35-201ENST00000503360 TOMM22Q9NS69 142 aa3.33□□□□□ -1.88
HMGB1P35-201ENST00000503360 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP3.32□□□□□ -1.88
HMGB1P35-201ENST00000503360 GAGE12BA1L429 117 aa3.32□□□□□ -1.88
HMGB1P35-201ENST00000503360 GAGE12HA6NDE8 117 aa3.32□□□□□ -1.88
HMGB1P35-201ENST00000503360 FOXP2O15409 715 aa3.32□□□□□ -1.88
HMGB1P35-201ENST00000503360 ULK1O75385 1050 aa3.32□□□□□ -1.88
HMGB1P35-201ENST00000503360 CYP17A1P05093 508 aa3.32□□□□□ -1.88
HMGB1P35-201ENST00000503360 PDGFRBP09619 1106 aa3.32□□□□□ -1.88
HMGB1P35-201ENST00000503360 PTX3P26022 381 aaPredicted RBP3.32□□□□□ -1.88
HMGB1P35-201ENST00000503360 ZFP36P26651 326 aaKnown RBP3.32□□□□□ -1.88
HMGB1P35-201ENST00000503360 ITKQ08881 620 aa3.32□□□□□ -1.88
HMGB1P35-201ENST00000503360 DDB1Q16531 1140 aa3.32□□□□□ -1.88
HMGB1P35-201ENST00000503360 BRDTQ58F21 947 aaPredicted RBP3.32□□□□□ -1.88
HMGB1P35-201ENST00000503360 CATSPEREQ5SY80 951 aa3.32□□□□□ -1.88
HMGB1P35-201ENST00000503360 BROXQ5VW32 411 aa3.32□□□□□ -1.88
HMGB1P35-201ENST00000503360 NECAB2Q7Z6G3 386 aa3.32□□□□□ -1.88
HMGB1P35-201ENST00000503360 ANKRD53Q8N9V6 530 aa3.32□□□□□ -1.88
HMGB1P35-201ENST00000503360 C9orf106Q8NAJ2 232 aa3.32□□□□□ -1.88
HMGB1P35-201ENST00000503360 LINC00476Q8WZB0 136 aa3.32□□□□□ -1.88
HMGB1P35-201ENST00000503360 E2F7Q96AV8 911 aa3.32□□□□□ -1.88
HMGB1P35-201ENST00000503360 ZNF512Q96ME7 567 aaPredicted RBP3.32□□□□□ -1.88
HMGB1P35-201ENST00000503360 GBP4Q96PP9 640 aa3.32□□□□□ -1.88
HMGB1P35-201ENST00000503360 PUS7LQ9H0K6 701 aaKnown RBP3.32□□□□□ -1.88
HMGB1P35-201ENST00000503360 SERHL2Q9H4I8 314 aa3.32□□□□□ -1.88
HMGB1P35-201ENST00000503360 VTA1Q9NP79 307 aa3.32□□□□□ -1.88
HMGB1P35-201ENST00000503360 TYW1Q9NV66 732 aaKnown RBP3.32□□□□□ -1.88
HMGB1P35-201ENST00000503360 DENND2AQ9ULE3 1009 aa3.32□□□□□ -1.88
HMGB1P35-201ENST00000503360 WASHC2CQ9Y4E1 1318 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms