RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 IGBP1P78318 339 aa19.78■□□□□ 0.76
CCDC88C-203ENST00000389856 KRT83P78385 493 aa19.78■□□□□ 0.76
CCDC88C-203ENST00000389856 NAA30Q147X3 362 aaPredicted RBP19.78■□□□□ 0.76
CCDC88C-203ENST00000389856 CCDC170Q8IYT3 715 aa19.78■□□□□ 0.76
CCDC88C-203ENST00000389856 LRRC71Q8N4P6 559 aa19.78■□□□□ 0.76
CCDC88C-203ENST00000389856 RNF149Q8NC42 400 aa19.78■□□□□ 0.76
CCDC88C-203ENST00000389856 TMC2Q8TDI7 906 aa19.78■□□□□ 0.76
CCDC88C-203ENST00000389856 EPN1Q9Y6I3 576 aaPredicted RBP19.78■□□□□ 0.76
CCDC88C-203ENST00000389856 KAT6AQ92794 2004 aa19.78■□□□□ 0.76
CCDC88C-203ENST00000389856 NRCAMQ92823 1304 aa19.77■□□□□ 0.76
CCDC88C-203ENST00000389856 ZNF233A6NK53 670 aa19.77■□□□□ 0.76
CCDC88C-203ENST00000389856 ANKRD63C9JTQ0 380 aa19.77■□□□□ 0.76
CCDC88C-203ENST00000389856 EXTL3O43909 919 aa19.77■□□□□ 0.76
CCDC88C-203ENST00000389856 DUSP11O75319 330 aaKnown RBP19.77■□□□□ 0.76
CCDC88C-203ENST00000389856 F2P00734 622 aa19.77■□□□□ 0.76
CCDC88C-203ENST00000389856 GNRH1P01148 92 aa19.77■□□□□ 0.76
CCDC88C-203ENST00000389856 SRGAP2CP0DJJ0 459 aa19.77■□□□□ 0.76
CCDC88C-203ENST00000389856 MATR3P43243 847 aaKnown RBP eCLIP19.77■□□□□ 0.76
CCDC88C-203ENST00000389856 FLT3LGP49771 235 aa19.77■□□□□ 0.76
CCDC88C-203ENST00000389856 MYL7Q01449 175 aa19.77■□□□□ 0.76
CCDC88C-203ENST00000389856 KCNMA1Q12791 1236 aa19.77■□□□□ 0.76
CCDC88C-203ENST00000389856 GRIK4Q16099 956 aa19.77■□□□□ 0.76
CCDC88C-203ENST00000389856 SYN2Q92777 582 aaPredicted RBP19.77■□□□□ 0.76
CCDC88C-203ENST00000389856 FBXL18Q96ME1 805 aa19.77■□□□□ 0.76
CCDC88C-203ENST00000389856 GCNT4Q9P109 453 aa19.77■□□□□ 0.76
CCDC88C-203ENST00000389856 FBXL5Q9UKA1 691 aa19.77■□□□□ 0.76
CCDC88C-203ENST00000389856 MYO6Q9UM54 1294 aa19.77■□□□□ 0.76
CCDC88C-203ENST00000389856 ZEB2O60315 1214 aa19.76■□□□□ 0.75
CCDC88C-203ENST00000389856 IPO7O95373 1038 aaKnown RBP19.76■□□□□ 0.75
CCDC88C-203ENST00000389856 RFX1P22670 979 aa19.76■□□□□ 0.75
CCDC88C-203ENST00000389856 HNRNPH3P31942 346 aaKnown RBP19.76■□□□□ 0.75
CCDC88C-203ENST00000389856 GTF2H1P32780 548 aa19.76■□□□□ 0.75
CCDC88C-203ENST00000389856 CYLC1P35663 651 aaPredicted RBP19.76■□□□□ 0.75
CCDC88C-203ENST00000389856 KLK7P49862 253 aa19.76■□□□□ 0.75
CCDC88C-203ENST00000389856 MCCD1P59942 119 aaPredicted RBP19.76■□□□□ 0.75
CCDC88C-203ENST00000389856 ERCC6LQ2NKX8 1250 aa19.76■□□□□ 0.75
CCDC88C-203ENST00000389856 MTHFD1LQ6UB35 978 aa19.76■□□□□ 0.75
CCDC88C-203ENST00000389856 TAS1R3Q7RTX0 852 aa19.76■□□□□ 0.75
CCDC88C-203ENST00000389856 GPR161Q8N6U8 529 aaKnown RBP19.76■□□□□ 0.75
CCDC88C-203ENST00000389856 CEP112Q8N8E3 955 aa19.76■□□□□ 0.75
CCDC88C-203ENST00000389856 RDH13Q8NBN7 331 aa19.76■□□□□ 0.75
CCDC88C-203ENST00000389856 EHBP1Q8NDI1 1231 aa19.76■□□□□ 0.75
CCDC88C-203ENST00000389856 TRAPPC12Q8WVT3 735 aa19.76■□□□□ 0.75
CCDC88C-203ENST00000389856 VTI1AQ96AJ9 217 aa19.76■□□□□ 0.75
CCDC88C-203ENST00000389856 CARD6Q9BX69 1037 aa19.76■□□□□ 0.75
CCDC88C-203ENST00000389856 HAUS4Q9H6D7 363 aa19.76■□□□□ 0.75
CCDC88C-203ENST00000389856 ZSWIM8A7E2V4 1837 aa19.76■□□□□ 0.75
CCDC88C-203ENST00000389856 FANCGO15287 622 aa19.76■□□□□ 0.75
CCDC88C-203ENST00000389856 PMM2O15305 246 aa19.76■□□□□ 0.75
CCDC88C-203ENST00000389856 NDUFA10O95299 355 aa19.76■□□□□ 0.75
CCDC88C-203ENST00000389856 PRKCBP05771 671 aa19.76■□□□□ 0.75
CCDC88C-203ENST00000389856 ADSSP30520 456 aa19.76■□□□□ 0.75
CCDC88C-203ENST00000389856 MKRN4PQ13434 485 aaPredicted RBP19.76■□□□□ 0.75
CCDC88C-203ENST00000389856 NLRP4Q96MN2 994 aa19.76■□□□□ 0.75
CCDC88C-203ENST00000389856 CRACR2AQ9BSW2 395 aa19.76■□□□□ 0.75
CCDC88C-203ENST00000389856 AGPAT5Q9NUQ2 364 aa19.76■□□□□ 0.75
CCDC88C-203ENST00000389856 PRMT7Q9NVM4 692 aaPredicted RBP19.76■□□□□ 0.75
CCDC88C-203ENST00000389856 AGO2Q9UKV8 859 aaKnown RBP19.76■□□□□ 0.75
CCDC88C-203ENST00000389856 PLAGL2Q9UPG8 496 aa19.76■□□□□ 0.75
CCDC88C-203ENST00000389856 AKT3Q9Y243 479 aa19.76■□□□□ 0.75
CCDC88C-203ENST00000389856 CTAGE9A4FU28 777 aa19.75■□□□□ 0.75
CCDC88C-203ENST00000389856 TISP43B9A030 160 aa19.75■□□□□ 0.75
CCDC88C-203ENST00000389856 ATP8B1O43520 1251 aa19.75■□□□□ 0.75
CCDC88C-203ENST00000389856 TBC1D8O95759 1140 aa19.75■□□□□ 0.75
CCDC88C-203ENST00000389856 GNAT1P11488 350 aa19.75■□□□□ 0.75
CCDC88C-203ENST00000389856 CTGFP29279 349 aa19.75■□□□□ 0.75
CCDC88C-203ENST00000389856 CLCN3P51790 818 aa19.75■□□□□ 0.75
CCDC88C-203ENST00000389856 PTENP60484 403 aa19.75■□□□□ 0.75
CCDC88C-203ENST00000389856 DRP2Q13474 957 aa19.75■□□□□ 0.75
CCDC88C-203ENST00000389856 MFSD10Q14728 455 aa19.75■□□□□ 0.75
CCDC88C-203ENST00000389856 FSCN1Q16658 493 aaKnown RBP19.75■□□□□ 0.75
CCDC88C-203ENST00000389856 SLC39A4Q6P5W5 647 aa19.75■□□□□ 0.75
CCDC88C-203ENST00000389856 FBXO38Q6PIJ6 1188 aa19.75■□□□□ 0.75
CCDC88C-203ENST00000389856 RRAGAQ7L523 313 aa19.75■□□□□ 0.75
CCDC88C-203ENST00000389856 RABGGTAQ92696 567 aa19.75■□□□□ 0.75
CCDC88C-203ENST00000389856 MFSD14AQ96MC6 490 aa19.75■□□□□ 0.75
CCDC88C-203ENST00000389856 MSTO1Q9BUK6 570 aa19.75■□□□□ 0.75
CCDC88C-203ENST00000389856 CCDC113Q9H0I3 377 aa19.75■□□□□ 0.75
CCDC88C-203ENST00000389856 LZTFL1Q9NQ48 299 aa19.75■□□□□ 0.75
CCDC88C-203ENST00000389856 CDC23Q9UJX2 597 aa19.75■□□□□ 0.75
CCDC88C-203ENST00000389856 ACKR2O00590 384 aa19.74■□□□□ 0.75
CCDC88C-203ENST00000389856 CLDN3O15551 220 aa19.74■□□□□ 0.75
CCDC88C-203ENST00000389856 ADCY6O43306 1168 aa19.74■□□□□ 0.75
CCDC88C-203ENST00000389856 TOM1L1O75674 476 aa19.74■□□□□ 0.75
CCDC88C-203ENST00000389856 MYL3P08590 195 aa19.74■□□□□ 0.75
CCDC88C-203ENST00000389856 CYBAP13498 195 aa19.74■□□□□ 0.75
CCDC88C-203ENST00000389856 PON1P27169 355 aa19.74■□□□□ 0.75
CCDC88C-203ENST00000389856 POLR2FP61218 127 aaKnown RBP19.74■□□□□ 0.75
CCDC88C-203ENST00000389856 PRKCZQ05513 592 aa19.74■□□□□ 0.75
CCDC88C-203ENST00000389856 TMEM132AQ24JP5 1023 aa19.74■□□□□ 0.75
CCDC88C-203ENST00000389856 KIAA0753Q2KHM9 967 aa19.74■□□□□ 0.75
CCDC88C-203ENST00000389856 SFMBT2Q5VUG0 894 aa19.74■□□□□ 0.75
CCDC88C-203ENST00000389856 PDXDC1Q6P996 788 aa19.74■□□□□ 0.75
CCDC88C-203ENST00000389856 ZNF410Q86VK4 478 aa19.74■□□□□ 0.75
CCDC88C-203ENST00000389856 IFNLR1Q8IU57 520 aaPredicted RBP19.74■□□□□ 0.75
CCDC88C-203ENST00000389856 CCDC155Q8N6L0 562 aa19.74■□□□□ 0.75
CCDC88C-203ENST00000389856 LINC01465Q8N7H1 131 aa19.74■□□□□ 0.75
CCDC88C-203ENST00000389856 GOLGA1Q92805 767 aa19.74■□□□□ 0.75
CCDC88C-203ENST00000389856 SAAL1Q96ER3 474 aa19.74■□□□□ 0.75
CCDC88C-203ENST00000389856 ARHGAP39Q9C0H5 1083 aa19.74■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms