RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 HERVK_113P62684 666 aa16.93■□□□□ 0.3
COL17A1-202ENST00000369733 TFDP2Q14188 446 aa16.93■□□□□ 0.3
COL17A1-202ENST00000369733 SLFN12LQ6IEE8 588 aa16.93■□□□□ 0.3
COL17A1-202ENST00000369733 ADGRF4Q8IZF3 695 aa16.93■□□□□ 0.3
COL17A1-202ENST00000369733 ROPN1BQ9BZX4 212 aaPredicted RBP16.93■□□□□ 0.3
COL17A1-202ENST00000369733 TRIM15Q9C019 465 aa16.93■□□□□ 0.3
COL17A1-202ENST00000369733 ROPN1Q9HAT0 212 aaPredicted RBP16.93■□□□□ 0.3
COL17A1-202ENST00000369733 FAM47DPA6NHR8 397 aa16.92■□□□□ 0.3
COL17A1-202ENST00000369733 PSAPP07602 524 aa16.92■□□□□ 0.3
COL17A1-202ENST00000369733 ERFP50548 548 aa16.92■□□□□ 0.3
COL17A1-202ENST00000369733 COPS2P61201 443 aa16.92■□□□□ 0.3
COL17A1-202ENST00000369733 C16orf87Q6PH81 154 aa16.92■□□□□ 0.3
COL17A1-202ENST00000369733 ACAD11Q709F0 780 aa16.92■□□□□ 0.3
COL17A1-202ENST00000369733 PAGR1Q9BTK6 254 aa16.92■□□□□ 0.3
COL17A1-202ENST00000369733 GOLPH3Q9H4A6 298 aa16.92■□□□□ 0.3
COL17A1-202ENST00000369733 ZNF446Q9NWS9 450 aa16.92■□□□□ 0.3
COL17A1-202ENST00000369733 RAB21Q9UL25 225 aa16.92■□□□□ 0.3
COL17A1-202ENST00000369733 CLRN2A0PK11 232 aa16.92■□□□□ 0.3
COL17A1-202ENST00000369733 PFDN6O15212 129 aa16.92■□□□□ 0.3
COL17A1-202ENST00000369733 CLDN3O15551 220 aa16.92■□□□□ 0.3
COL17A1-202ENST00000369733 SCTRP47872 440 aa16.92■□□□□ 0.3
COL17A1-202ENST00000369733 LRRC34Q8IZ02 419 aa16.92■□□□□ 0.3
COL17A1-202ENST00000369733 WWP1Q9H0M0 922 aa16.92■□□□□ 0.3
COL17A1-202ENST00000369733 EPB41L4AQ9HCS5 686 aaPredicted RBP16.92■□□□□ 0.3
COL17A1-202ENST00000369733 TMEM51Q9NW97 253 aa16.92■□□□□ 0.3
COL17A1-202ENST00000369733 IRAK4Q9NWZ3 460 aa16.92■□□□□ 0.3
COL17A1-202ENST00000369733 UBAP1LF5GYI3 381 aa16.92■□□□□ 0.3
COL17A1-202ENST00000369733 K7ERI5 159 aa16.92■□□□□ 0.3
COL17A1-202ENST00000369733 ANKMY2Q8IV38 441 aa16.92■□□□□ 0.3
COL17A1-202ENST00000369733 UBN1Q9NPG3 1134 aa16.92■□□□□ 0.3
COL17A1-202ENST00000369733 ENO1P06733 434 aaKnown RBP16.92■□□□□ 0.3
COL17A1-202ENST00000369733 RFX5P48382 616 aaPredicted RBP16.92■□□□□ 0.3
COL17A1-202ENST00000369733 LCA5Q86VQ0 697 aa16.92■□□□□ 0.3
COL17A1-202ENST00000369733 VPS11Q9H270 941 aa16.92■□□□□ 0.3
COL17A1-202ENST00000369733 TMBIM4Q9HC24 238 aa16.92■□□□□ 0.3
COL17A1-202ENST00000369733 NGRNQ9NPE2 291 aaKnown RBP16.92■□□□□ 0.3
COL17A1-202ENST00000369733 CAPN6Q9Y6Q1 641 aa16.92■□□□□ 0.3
COL17A1-202ENST00000369733 KPNA7A9QM74 516 aa16.91■□□□□ 0.3
COL17A1-202ENST00000369733 BBOX1O75936 387 aa16.91■□□□□ 0.3
COL17A1-202ENST00000369733 KDSRQ06136 332 aa16.91■□□□□ 0.3
COL17A1-202ENST00000369733 GRAPQ13588 217 aa16.91■□□□□ 0.3
COL17A1-202ENST00000369733 HIC1Q14526 733 aa16.91■□□□□ 0.3
COL17A1-202ENST00000369733 SURF1Q15526 300 aa16.91■□□□□ 0.3
COL17A1-202ENST00000369733 C7orf31Q8N865 590 aa16.91■□□□□ 0.3
COL17A1-202ENST00000369733 GRAPLQ8TC17 118 aaPredicted RBP16.91■□□□□ 0.3
COL17A1-202ENST00000369733 SYN2Q92777 582 aaPredicted RBP16.91■□□□□ 0.3
COL17A1-202ENST00000369733 FAM213AQ9BRX8 229 aa16.91■□□□□ 0.3
COL17A1-202ENST00000369733 TRIM33Q9UPN9 1127 aa16.91■□□□□ 0.3
COL17A1-202ENST00000369733 PI4K2BG5E9Z4 385 aa16.91■□□□□ 0.3
COL17A1-202ENST00000369733 GOLGA8RI6L899 631 aa16.91■□□□□ 0.3
COL17A1-202ENST00000369733 GSTA4O15217 222 aa16.91■□□□□ 0.3
COL17A1-202ENST00000369733 CYP26A1O43174 497 aa16.91■□□□□ 0.3
COL17A1-202ENST00000369733 PRLRP16471 622 aa16.91■□□□□ 0.3
COL17A1-202ENST00000369733 EIF2AK2P19525 551 aaKnown RBP16.91■□□□□ 0.3
COL17A1-202ENST00000369733 OCRLQ01968 901 aa16.91■□□□□ 0.3
COL17A1-202ENST00000369733 SLC29A2Q14542 456 aa16.91■□□□□ 0.3
COL17A1-202ENST00000369733 CRYMQ14894 314 aa16.91■□□□□ 0.3
COL17A1-202ENST00000369733 PPP6R3Q5H9R7 873 aaPredicted RBP16.91■□□□□ 0.3
COL17A1-202ENST00000369733 RBM15Q96T37 977 aaKnown RBP eCLIP16.91■□□□□ 0.3
COL17A1-202ENST00000369733 ADAM33Q9BZ11 813 aa16.91■□□□□ 0.3
COL17A1-202ENST00000369733 APEX2Q9UBZ4 518 aa16.91■□□□□ 0.3
COL17A1-202ENST00000369733 PLAGL2Q9UPG8 496 aa16.91■□□□□ 0.3
COL17A1-202ENST00000369733 ZBBXA8MT70 800 aa16.91■□□□□ 0.3
COL17A1-202ENST00000369733 EZH2Q15910 746 aaKnown RBP16.91■□□□□ 0.3
COL17A1-202ENST00000369733 HIF1AQ16665 826 aa16.91■□□□□ 0.3
COL17A1-202ENST00000369733 BARGINQ6ZT62 677 aa16.91■□□□□ 0.3
COL17A1-202ENST00000369733 DTNBP1Q96EV8 351 aa16.91■□□□□ 0.3
COL17A1-202ENST00000369733 EIF2AK1Q9BQI3 630 aaKnown RBP16.91■□□□□ 0.3
COL17A1-202ENST00000369733 SUCLA2Q9P2R7 463 aaPredicted RBP16.91■□□□□ 0.3
COL17A1-202ENST00000369733 HEY1Q9Y5J3 304 aa16.91■□□□□ 0.3
COL17A1-202ENST00000369733 LDHAP00338 332 aaKnown RBP16.91■□□□□ 0.3
COL17A1-202ENST00000369733 SLC9A1P19634 815 aa16.91■□□□□ 0.3
COL17A1-202ENST00000369733 MRPS35P82673 323 aaKnown RBP16.91■□□□□ 0.3
COL17A1-202ENST00000369733 TAF1BQ53T94 588 aaPredicted RBP16.91■□□□□ 0.3
COL17A1-202ENST00000369733 HACE1Q8IYU2 909 aa16.91■□□□□ 0.3
COL17A1-202ENST00000369733 C4orf33Q8N1A6 199 aa16.91■□□□□ 0.3
COL17A1-202ENST00000369733 BTBD6Q96KE9 485 aa16.91■□□□□ 0.3
COL17A1-202ENST00000369733 C9orf72Q96LT7 481 aa16.91■□□□□ 0.3
COL17A1-202ENST00000369733 WDR46O15213 610 aaKnown RBP16.9■□□□□ 0.3
COL17A1-202ENST00000369733 ZNF18P17022 549 aa16.9■□□□□ 0.3
COL17A1-202ENST00000369733 GNA15P30679 374 aa16.9■□□□□ 0.3
COL17A1-202ENST00000369733 ST3GAL1Q11201 340 aa16.9■□□□□ 0.3
COL17A1-202ENST00000369733 PACS2Q86VP3 889 aa16.9■□□□□ 0.3
COL17A1-202ENST00000369733 CCDC124Q96CT7 223 aaKnown RBP16.9■□□□□ 0.3
COL17A1-202ENST00000369733 MARK3P27448 753 aa16.9■□□□□ 0.3
COL17A1-202ENST00000369733 CDHR1Q96JP9 859 aa16.9■□□□□ 0.3
COL17A1-202ENST00000369733 TSSK1BQ9BXA7 367 aa16.9■□□□□ 0.3
COL17A1-202ENST00000369733 CYP26B1Q9NR63 512 aa16.9■□□□□ 0.3
COL17A1-202ENST00000369733 NMT1P30419 496 aaKnown RBP16.9■□□□□ 0.3
COL17A1-202ENST00000369733 P3H1Q32P28 736 aa16.9■□□□□ 0.3
COL17A1-202ENST00000369733 MDH1BQ5I0G3 518 aa16.9■□□□□ 0.3
COL17A1-202ENST00000369733 TMEM179Q6ZVK1 233 aa16.9■□□□□ 0.3
COL17A1-202ENST00000369733 KIAA1586Q9HCI6 787 aa16.9■□□□□ 0.3
COL17A1-202ENST00000369733 SLC1A1P43005 524 aa16.9■□□□□ 0.3
COL17A1-202ENST00000369733 ALDH18A1P54886 795 aaKnown RBP16.9■□□□□ 0.3
COL17A1-202ENST00000369733 SLC12A1Q13621 1099 aa16.9■□□□□ 0.3
COL17A1-202ENST00000369733 CC2D2BQ6DHV5 1058 aa16.9■□□□□ 0.3
COL17A1-202ENST00000369733 TRIM67Q6ZTA4 783 aa16.9■□□□□ 0.3
COL17A1-202ENST00000369733 RHPN2Q8IUC4 686 aa16.9■□□□□ 0.3
COL17A1-202ENST00000369733 DBNDD1Q9H9R9 158 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms