RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 E2F4Q16254 413 aa28.41■■■□□ 2.14
TRIM28-204ENST00000594806 CMTR2Q8IYT2 770 aaKnown RBP28.41■■■□□ 2.14
TRIM28-204ENST00000594806 KCNN1Q92952 543 aa28.41■■■□□ 2.14
TRIM28-204ENST00000594806 TTYH1Q9H313 450 aaPredicted RBP28.41■■■□□ 2.14
TRIM28-204ENST00000594806 PARVGQ9HBI0 331 aa28.41■■■□□ 2.14
TRIM28-204ENST00000594806 ADGRA3Q8IWK6 1321 aa28.41■■■□□ 2.14
TRIM28-204ENST00000594806 A0A1B0GUA9 196 aa28.4■■■□□ 2.14
TRIM28-204ENST00000594806 SFI1A8K8P3 1242 aa28.4■■■□□ 2.14
TRIM28-204ENST00000594806 TBCAO75347 108 aaKnown RBP28.4■■■□□ 2.14
TRIM28-204ENST00000594806 PRKCBP05771 671 aa28.4■■■□□ 2.14
TRIM28-204ENST00000594806 ARF4P18085 180 aaPredicted RBP28.4■■■□□ 2.14
TRIM28-204ENST00000594806 ABCD1P33897 745 aa28.4■■■□□ 2.14
TRIM28-204ENST00000594806 AMPD3Q01432 767 aa28.4■■■□□ 2.14
TRIM28-204ENST00000594806 TAP1Q03518 808 aa28.4■■■□□ 2.14
TRIM28-204ENST00000594806 ZNF598Q86UK7 904 aaKnown RBP28.4■■■□□ 2.14
TRIM28-204ENST00000594806 SLC17A8Q8NDX2 589 aa28.4■■■□□ 2.14
TRIM28-204ENST00000594806 PGBD4Q96DM1 585 aa28.4■■■□□ 2.14
TRIM28-204ENST00000594806 SAMD11Q96NU1 681 aa28.4■■■□□ 2.14
TRIM28-204ENST00000594806 TNMDQ9H2S6 317 aa28.4■■■□□ 2.14
TRIM28-204ENST00000594806 CHMP5Q9NZZ3 219 aa28.4■■■□□ 2.14
TRIM28-204ENST00000594806 CNTNAP2Q9UHC6 1331 aa28.4■■■□□ 2.14
TRIM28-204ENST00000594806 NPHP3-ACAD11A0A0J9YXS1 232 aa28.39■■■□□ 2.14
TRIM28-204ENST00000594806 LCHNA4D1U4 455 aa28.39■■■□□ 2.14
TRIM28-204ENST00000594806 PRPF4BQ13523 1007 aaKnown RBP28.39■■■□□ 2.14
TRIM28-204ENST00000594806 FIBCD1Q8N539 461 aa28.39■■■□□ 2.14
TRIM28-204ENST00000594806 KCNH3Q9ULD8 1083 aa28.39■■■□□ 2.14
TRIM28-204ENST00000594806 LAMA2P24043 3122 aaKnown RBP28.38■■■□□ 2.13
TRIM28-204ENST00000594806 FNDC1Q4ZHG4 1894 aaPredicted RBP28.38■■■□□ 2.13
TRIM28-204ENST00000594806 A0A1W2PQ27 194 aa28.38■■■□□ 2.13
TRIM28-204ENST00000594806 A0A1W2PQ64 194 aa28.38■■■□□ 2.13
TRIM28-204ENST00000594806 A0A1W2PQD8 194 aa28.38■■■□□ 2.13
TRIM28-204ENST00000594806 LINC01553A4QN01 128 aa28.38■■■□□ 2.13
TRIM28-204ENST00000594806 BTG3Q14201 252 aaPredicted RBP28.38■■■□□ 2.13
TRIM28-204ENST00000594806 MRPL10Q7Z7H8 261 aaKnown RBP28.38■■■□□ 2.13
TRIM28-204ENST00000594806 MYCT1Q8N699 235 aa28.38■■■□□ 2.13
TRIM28-204ENST00000594806 DDX12PQ92771 950 aa28.38■■■□□ 2.13
TRIM28-204ENST00000594806 DHX58Q96C10 678 aa28.38■■■□□ 2.13
TRIM28-204ENST00000594806 CHAMP1Q96JM3 812 aa28.38■■■□□ 2.13
TRIM28-204ENST00000594806 TGS1Q96RS0 853 aaKnown RBP28.38■■■□□ 2.13
TRIM28-204ENST00000594806 KBTBD4Q9NVX7 518 aa28.38■■■□□ 2.13
TRIM28-204ENST00000594806 USP25Q9UHP3 1055 aa28.38■■■□□ 2.13
TRIM28-204ENST00000594806 RWDD3Q9Y3V2 267 aa28.38■■■□□ 2.13
TRIM28-204ENST00000594806 PCDHB2Q9Y5E7 798 aa28.38■■■□□ 2.13
TRIM28-204ENST00000594806 MYMKA6NI61 221 aa28.37■■■□□ 2.13
TRIM28-204ENST00000594806 N4BP3O15049 544 aa28.37■■■□□ 2.13
TRIM28-204ENST00000594806 POLR2DO15514 142 aaKnown RBP28.37■■■□□ 2.13
TRIM28-204ENST00000594806 UBXN11Q5T124 520 aa28.37■■■□□ 2.13
TRIM28-204ENST00000594806 SLC27A1Q6PCB7 646 aa28.37■■■□□ 2.13
TRIM28-204ENST00000594806 KIFC3Q9BVG8 833 aa28.37■■■□□ 2.13
TRIM28-204ENST00000594806 TMEM117Q9H0C3 514 aa28.37■■■□□ 2.13
TRIM28-204ENST00000594806 MTMR10Q9NXD2 777 aa28.37■■■□□ 2.13
TRIM28-204ENST00000594806 SEL1LQ9UBV2 794 aa28.37■■■□□ 2.13
TRIM28-204ENST00000594806 SLC16A4O15374 487 aa28.36■■■□□ 2.13
TRIM28-204ENST00000594806 B4GALT5O43286 388 aa28.36■■■□□ 2.13
TRIM28-204ENST00000594806 ATF7P17544 494 aaPredicted RBP28.36■■■□□ 2.13
TRIM28-204ENST00000594806 IBSPP21815 317 aaPredicted RBP28.36■■■□□ 2.13
TRIM28-204ENST00000594806 NCKAP1LP55160 1127 aa28.36■■■□□ 2.13
TRIM28-204ENST00000594806 ERVK-21P61565 698 aa28.36■■■□□ 2.13
TRIM28-204ENST00000594806 CACNB1Q02641 598 aaPredicted RBP28.36■■■□□ 2.13
TRIM28-204ENST00000594806 Q7L0L9 218 aa28.36■■■□□ 2.13
TRIM28-204ENST00000594806 APBB1IPQ7Z5R6 666 aaPredicted RBP28.36■■■□□ 2.13
TRIM28-204ENST00000594806 HACE1Q8IYU2 909 aa28.36■■■□□ 2.13
TRIM28-204ENST00000594806 ABI1Q8IZP0 508 aa28.36■■■□□ 2.13
TRIM28-204ENST00000594806 TMEM161BQ8NDZ6 487 aa28.36■■■□□ 2.13
TRIM28-204ENST00000594806 CPB2Q96IY4 423 aa28.36■■■□□ 2.13
TRIM28-204ENST00000594806 UBN1Q9NPG3 1134 aa28.36■■■□□ 2.13
TRIM28-204ENST00000594806 FAM237AA0A1B0GTK4 181 aa28.35■■■□□ 2.13
TRIM28-204ENST00000594806 TRAK2O60296 914 aa28.35■■■□□ 2.13
TRIM28-204ENST00000594806 MAPTP10636 758 aaKnown RBP28.35■■■□□ 2.13
TRIM28-204ENST00000594806 GAP43P17677 238 aa28.35■■■□□ 2.13
TRIM28-204ENST00000594806 STRN3Q13033 797 aa28.35■■■□□ 2.13
TRIM28-204ENST00000594806 TMEM132AQ24JP5 1023 aa28.35■■■□□ 2.13
TRIM28-204ENST00000594806 DYMQ7RTS9 669 aa28.35■■■□□ 2.13
TRIM28-204ENST00000594806 CLP1Q92989 425 aaKnown RBP28.35■■■□□ 2.13
TRIM28-204ENST00000594806 ADPGKQ9BRR6 497 aa28.35■■■□□ 2.13
TRIM28-204ENST00000594806 MRPL4Q9BYD3 311 aaKnown RBP28.35■■■□□ 2.13
TRIM28-204ENST00000594806 TRIM6Q9C030 488 aaPredicted RBP28.35■■■□□ 2.13
TRIM28-204ENST00000594806 RALGAPA2Q2PPJ7 1873 aa28.35■■■□□ 2.13
TRIM28-204ENST00000594806 CSPP1Q1MSJ5 1256 aa28.34■■■□□ 2.13
TRIM28-204ENST00000594806 CNNM4Q6P4Q7 775 aa28.34■■■□□ 2.13
TRIM28-204ENST00000594806 FAM178BQ8IXR5 827 aa28.34■■■□□ 2.13
TRIM28-204ENST00000594806 RNF169Q8NCN4 708 aa28.34■■■□□ 2.13
TRIM28-204ENST00000594806 DNAJC19Q96DA6 116 aa28.34■■■□□ 2.13
TRIM28-204ENST00000594806 ZHX3Q9H4I2 956 aa28.34■■■□□ 2.13
TRIM28-204ENST00000594806 HPSEQ9Y251 543 aa28.34■■■□□ 2.13
TRIM28-204ENST00000594806 TBKBP1A7MCY6 615 aa28.33■■■□□ 2.13
TRIM28-204ENST00000594806 ARHGEF15O94989 841 aa28.33■■■□□ 2.13
TRIM28-204ENST00000594806 PFKFB1P16118 471 aa28.33■■■□□ 2.13
TRIM28-204ENST00000594806 LIG1P18858 919 aa28.33■■■□□ 2.13
TRIM28-204ENST00000594806 HAUS6Q7Z4H7 955 aa28.33■■■□□ 2.13
TRIM28-204ENST00000594806 CEP57L1Q8IYX8 460 aa28.33■■■□□ 2.13
TRIM28-204ENST00000594806 MRPL9Q9BYD2 267 aaKnown RBP28.33■■■□□ 2.13
TRIM28-204ENST00000594806 ST6GALNAC4Q9H4F1 302 aa28.33■■■□□ 2.13
TRIM28-204ENST00000594806 GDPD2Q9HCC8 539 aa28.33■■■□□ 2.13
TRIM28-204ENST00000594806 RNF19AQ9NV58 838 aa28.33■■■□□ 2.13
TRIM28-204ENST00000594806 TNFSF13BQ9Y275 285 aa28.33■■■□□ 2.13
TRIM28-204ENST00000594806 NLRC5Q86WI3 1866 aa28.33■■■□□ 2.13
TRIM28-204ENST00000594806 FRMD3A2A2Y4 597 aa28.32■■■□□ 2.12
TRIM28-204ENST00000594806 SLFN14P0C7P3 912 aa28.32■■■□□ 2.12
TRIM28-204ENST00000594806 FGFR1P11362 822 aa28.32■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms