RNA–Protein interactions for RNA: ENST00000594298.5

SHKBP1-203, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 716 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-203ENST00000594298 SLC7A3Q8WY07 619 aa19.6■□□□□ 0.73
SHKBP1-203ENST00000594298 PGBD4Q96DM1 585 aa19.6■□□□□ 0.73
SHKBP1-203ENST00000594298 TMX3Q96JJ7 454 aa19.6■□□□□ 0.73
SHKBP1-203ENST00000594298 C8orf76Q96K31 380 aa19.6■□□□□ 0.73
SHKBP1-203ENST00000594298 SORCS3Q9UPU3 1222 aa19.6■□□□□ 0.73
SHKBP1-203ENST00000594298 P4HBP07237 508 aaKnown RBP19.59■□□□□ 0.73
SHKBP1-203ENST00000594298 GCFC2P16383 781 aaKnown RBP19.59■□□□□ 0.73
SHKBP1-203ENST00000594298 CA8P35219 290 aa19.59■□□□□ 0.73
SHKBP1-203ENST00000594298 RNASELQ05823 741 aaKnown RBP19.59■□□□□ 0.73
SHKBP1-203ENST00000594298 LETM2Q2VYF4 491 aa19.59■□□□□ 0.73
SHKBP1-203ENST00000594298 KIAA1841Q6NSI8 718 aa19.59■□□□□ 0.73
SHKBP1-203ENST00000594298 PIK3AP1Q6ZUJ8 805 aa19.59■□□□□ 0.73
SHKBP1-203ENST00000594298 NEK8Q86SG6 692 aa19.59■□□□□ 0.73
SHKBP1-203ENST00000594298 ZDHHC14Q8IZN3 488 aa19.59■□□□□ 0.73
SHKBP1-203ENST00000594298 TMEM87AQ8NBN3 555 aa19.59■□□□□ 0.73
SHKBP1-203ENST00000594298 BCL7CQ8WUZ0 217 aaPredicted RBP19.59■□□□□ 0.73
SHKBP1-203ENST00000594298 IRF2BPLQ9H1B7 796 aa19.59■□□□□ 0.73
SHKBP1-203ENST00000594298 DHX33Q9H6R0 707 aaKnown RBP19.59■□□□□ 0.73
SHKBP1-203ENST00000594298 INPP5FQ9Y2H2 1132 aa19.59■□□□□ 0.73
SHKBP1-203ENST00000594298 PCDHB2Q9Y5E7 798 aa19.59■□□□□ 0.73
SHKBP1-203ENST00000594298 COL4A3BPQ9Y5P4 624 aa19.59■□□□□ 0.73
SHKBP1-203ENST00000594298 TBX3O15119 743 aa19.58■□□□□ 0.72
SHKBP1-203ENST00000594298 RFC5P40937 340 aa19.58■□□□□ 0.72
SHKBP1-203ENST00000594298 SLC11A1P49279 550 aa19.58■□□□□ 0.72
SHKBP1-203ENST00000594298 NPEPPSP55786 919 aa19.58■□□□□ 0.72
SHKBP1-203ENST00000594298 LONRF3Q496Y0 759 aa19.58■□□□□ 0.72
SHKBP1-203ENST00000594298 ATAT1Q5SQI0 421 aa19.58■□□□□ 0.72
SHKBP1-203ENST00000594298 RARS2Q5T160 578 aaKnown RBP19.58■□□□□ 0.72
SHKBP1-203ENST00000594298 AGMOQ6ZNB7 445 aa19.58■□□□□ 0.72
SHKBP1-203ENST00000594298 SRGAP1Q7Z6B7 1085 aa19.58■□□□□ 0.72
SHKBP1-203ENST00000594298 MRPL10Q7Z7H8 261 aaKnown RBP19.58■□□□□ 0.72
SHKBP1-203ENST00000594298 PPFIBP1Q86W92 1011 aa19.58■□□□□ 0.72
SHKBP1-203ENST00000594298 DIS3L2Q8IYB7 885 aaKnown RBP19.58■□□□□ 0.72
SHKBP1-203ENST00000594298 OXER1Q8TDS5 423 aa19.58■□□□□ 0.72
SHKBP1-203ENST00000594298 PSPC1Q8WXF1 523 aaKnown RBP19.58■□□□□ 0.72
SHKBP1-203ENST00000594298 AUTS2Q8WXX7 1259 aa19.58■□□□□ 0.72
SHKBP1-203ENST00000594298 CEP170P1Q96L14 293 aa19.58■□□□□ 0.72
SHKBP1-203ENST00000594298 WRAP73Q9P2S5 460 aaPredicted RBP19.58■□□□□ 0.72
SHKBP1-203ENST00000594298 DNAJB4Q9UDY4 337 aa19.58■□□□□ 0.72
SHKBP1-203ENST00000594298 USTQ9Y2C2 406 aa19.58■□□□□ 0.72
SHKBP1-203ENST00000594298 CNTNAP2Q9UHC6 1331 aa19.57■□□□□ 0.72
SHKBP1-203ENST00000594298 KMT2EQ8IZD2 1858 aa19.57■□□□□ 0.72
SHKBP1-203ENST00000594298 GAS2O43903 313 aaKnown RBP19.57■□□□□ 0.72
SHKBP1-203ENST00000594298 EPCAMP16422 314 aa19.57■□□□□ 0.72
SHKBP1-203ENST00000594298 FOSBP53539 338 aa19.57■□□□□ 0.72
SHKBP1-203ENST00000594298 PTPN14Q15678 1187 aa19.57■□□□□ 0.72
SHKBP1-203ENST00000594298 C4orf19Q8IY42 314 aa19.57■□□□□ 0.72
SHKBP1-203ENST00000594298 C12orf76Q8N812 135 aaPredicted RBP19.57■□□□□ 0.72
SHKBP1-203ENST00000594298 ZNF579Q8NAF0 562 aaKnown RBP19.57■□□□□ 0.72
SHKBP1-203ENST00000594298 URGCPQ8TCY9 931 aa19.57■□□□□ 0.72
SHKBP1-203ENST00000594298 VN1R3Q9BXE9 311 aa19.57■□□□□ 0.72
SHKBP1-203ENST00000594298 KANSL3Q9P2N6 904 aa19.57■□□□□ 0.72
SHKBP1-203ENST00000594298 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.57■□□□□ 0.72
SHKBP1-203ENST00000594298 BTBD18B2RXH4 712 aa19.56■□□□□ 0.72
SHKBP1-203ENST00000594298 B4GALT3O60512 393 aa19.56■□□□□ 0.72
SHKBP1-203ENST00000594298 BRD1O95696 1058 aa19.56■□□□□ 0.72
SHKBP1-203ENST00000594298 WEE2P0C1S8 567 aa19.56■□□□□ 0.72
SHKBP1-203ENST00000594298 HOXA11P31270 313 aaPredicted RBP19.56■□□□□ 0.72
SHKBP1-203ENST00000594298 NR5A1Q13285 461 aa19.56■□□□□ 0.72
SHKBP1-203ENST00000594298 EPHA7Q15375 998 aa19.56■□□□□ 0.72
SHKBP1-203ENST00000594298 ZNF280BQ86YH2 543 aa19.56■□□□□ 0.72
SHKBP1-203ENST00000594298 PLCD3Q8N3E9 789 aa19.56■□□□□ 0.72
SHKBP1-203ENST00000594298 TDRD5Q8NAT2 981 aaKnown RBP19.56■□□□□ 0.72
SHKBP1-203ENST00000594298 PRPF31Q8WWY3 499 aaKnown RBP19.56■□□□□ 0.72
SHKBP1-203ENST00000594298 HAS1Q92839 578 aa19.56■□□□□ 0.72
SHKBP1-203ENST00000594298 TMEM175Q9BSA9 504 aa19.56■□□□□ 0.72
SHKBP1-203ENST00000594298 MINDY3Q9H8M7 445 aa19.56■□□□□ 0.72
SHKBP1-203ENST00000594298 RSAD1Q9HA92 442 aa19.56■□□□□ 0.72
SHKBP1-203ENST00000594298 ASAP2O43150 1006 aa19.55■□□□□ 0.72
SHKBP1-203ENST00000594298 MARCH6O60337 910 aa19.55■□□□□ 0.72
SHKBP1-203ENST00000594298 CCNT1O60563 726 aaKnown RBP19.55■□□□□ 0.72
SHKBP1-203ENST00000594298 DDHD2O94830 711 aa19.55■□□□□ 0.72
SHKBP1-203ENST00000594298 PDGFBP01127 241 aaPredicted RBP19.55■□□□□ 0.72
SHKBP1-203ENST00000594298 YWHABP31946 246 aaKnown RBP19.55■□□□□ 0.72
SHKBP1-203ENST00000594298 LAMTOR4Q0VGL1 99 aa19.55■□□□□ 0.72
SHKBP1-203ENST00000594298 GNL2Q13823 731 aaKnown RBP19.55■□□□□ 0.72
SHKBP1-203ENST00000594298 PCBP1Q15365 356 aaKnown RBP eCLIP19.55■□□□□ 0.72
SHKBP1-203ENST00000594298 UBXN11Q5T124 520 aa19.55■□□□□ 0.72
SHKBP1-203ENST00000594298 CABP7Q86V35 215 aa19.55■□□□□ 0.72
SHKBP1-203ENST00000594298 FBXO18Q8NFZ0 1043 aa19.55■□□□□ 0.72
SHKBP1-203ENST00000594298 TCP11Q8WWU5 503 aa19.55■□□□□ 0.72
SHKBP1-203ENST00000594298 TMEM143Q96AN5 459 aa19.55■□□□□ 0.72
SHKBP1-203ENST00000594298 LXNQ9BS40 222 aa19.55■□□□□ 0.72
SHKBP1-203ENST00000594298 EMILIN2Q9BXX0 1053 aa19.55■□□□□ 0.72
SHKBP1-203ENST00000594298 GBP3Q9H0R5 595 aa19.55■□□□□ 0.72
SHKBP1-203ENST00000594298 SFXN1Q9H9B4 322 aa19.55■□□□□ 0.72
SHKBP1-203ENST00000594298 DBR1Q9UK59 544 aaKnown RBP19.55■□□□□ 0.72
SHKBP1-203ENST00000594298 LILRB3O75022 631 aa19.54■□□□□ 0.72
SHKBP1-203ENST00000594298 CD2BP2O95400 341 aaKnown RBP19.54■□□□□ 0.72
SHKBP1-203ENST00000594298 ALDH2P05091 517 aa19.54■□□□□ 0.72
SHKBP1-203ENST00000594298 SRGAP2CP0DJJ0 459 aa19.54■□□□□ 0.72
SHKBP1-203ENST00000594298 NCLP19338 710 aaKnown RBP19.54■□□□□ 0.72
SHKBP1-203ENST00000594298 AFF1P51825 1210 aaKnown RBP19.54■□□□□ 0.72
SHKBP1-203ENST00000594298 GUCY1B3Q02153 619 aa19.54■□□□□ 0.72
SHKBP1-203ENST00000594298 KANK3Q6NY19 840 aa19.54■□□□□ 0.72
SHKBP1-203ENST00000594298 OTUD6AQ7L8S5 288 aa19.54■□□□□ 0.72
SHKBP1-203ENST00000594298 GPR149Q86SP6 731 aa19.54■□□□□ 0.72
SHKBP1-203ENST00000594298 FERMT3Q86UX7 667 aa19.54■□□□□ 0.72
SHKBP1-203ENST00000594298 CNNM3Q8NE01 707 aa19.54■□□□□ 0.72
SHKBP1-203ENST00000594298 TNFRSF25Q93038 417 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 99.7 ms