RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 MSL1Q68DK7 614 aa14.57□□□□□ -0.08
SHMT2-222ENST00000555774 CELF4Q9BZC1 486 aaKnown RBP14.57□□□□□ -0.08
SHMT2-222ENST00000555774 KCNH7Q9NS40 1196 aa14.57□□□□□ -0.08
SHMT2-222ENST00000555774 ZNF219Q9P2Y4 722 aaPredicted RBP14.57□□□□□ -0.08
SHMT2-222ENST00000555774 SLC12A6Q9UHW9 1150 aa14.57□□□□□ -0.08
SHMT2-222ENST00000555774 UBIAD1Q9Y5Z9 338 aa14.57□□□□□ -0.08
SHMT2-222ENST00000555774 ZHX2Q9Y6X8 837 aa14.57□□□□□ -0.08
SHMT2-222ENST00000555774 DHX15O43143 795 aaKnown RBP14.57□□□□□ -0.08
SHMT2-222ENST00000555774 PHF2O75151 1096 aa14.57□□□□□ -0.08
SHMT2-222ENST00000555774 LRRN2O75325 713 aa14.57□□□□□ -0.08
SHMT2-222ENST00000555774 CAP2P40123 477 aa14.57□□□□□ -0.08
SHMT2-222ENST00000555774 QARSP47897 775 aaKnown RBP14.57□□□□□ -0.08
SHMT2-222ENST00000555774 CDR1P51861 262 aa14.57□□□□□ -0.08
SHMT2-222ENST00000555774 PPP2R2AP63151 447 aa14.57□□□□□ -0.08
SHMT2-222ENST00000555774 PRPF4BQ13523 1007 aaKnown RBP14.57□□□□□ -0.08
SHMT2-222ENST00000555774 PCNX4Q63HM2 1172 aa14.57□□□□□ -0.08
SHMT2-222ENST00000555774 HOOK3Q86VS8 718 aa14.57□□□□□ -0.08
SHMT2-222ENST00000555774 MYCBPAPQ8TBZ2 947 aa14.57□□□□□ -0.08
SHMT2-222ENST00000555774 HVCN1Q96D96 273 aa14.57□□□□□ -0.08
SHMT2-222ENST00000555774 CCT8L2Q96SF2 557 aa14.57□□□□□ -0.08
SHMT2-222ENST00000555774 AGO4Q9HCK5 861 aaKnown RBP14.57□□□□□ -0.08
SHMT2-222ENST00000555774 TBC1D22BQ9NU19 505 aa14.57□□□□□ -0.08
SHMT2-222ENST00000555774 HSPBP1Q9NZL4 362 aa14.57□□□□□ -0.08
SHMT2-222ENST00000555774 CTTNBP2NLQ9P2B4 639 aa14.57□□□□□ -0.08
SHMT2-222ENST00000555774 CCPG1Q9ULG6 757 aa14.57□□□□□ -0.08
SHMT2-222ENST00000555774 SAMM50Q9Y512 469 aa14.57□□□□□ -0.08
SHMT2-222ENST00000555774 ALG6Q9Y672 507 aa14.57□□□□□ -0.08
SHMT2-222ENST00000555774 ZNF536O15090 1300 aa14.56□□□□□ -0.08
SHMT2-222ENST00000555774 CLRN2A0PK11 232 aa14.56□□□□□ -0.08
SHMT2-222ENST00000555774 ANKRD65E5RJM6 399 aa14.56□□□□□ -0.08
SHMT2-222ENST00000555774 MEFVO15553 781 aaPredicted RBP14.56□□□□□ -0.08
SHMT2-222ENST00000555774 FTLP02792 175 aaPredicted RBP14.56□□□□□ -0.08
SHMT2-222ENST00000555774 FLT3P36888 993 aa14.56□□□□□ -0.08
SHMT2-222ENST00000555774 PPP3CAQ08209 521 aa14.56□□□□□ -0.08
SHMT2-222ENST00000555774 CROCCP2Q86T23 111 aa14.56□□□□□ -0.08
SHMT2-222ENST00000555774 FAM83AQ86UY5 434 aa14.56□□□□□ -0.08
SHMT2-222ENST00000555774 PACS2Q86VP3 889 aa14.56□□□□□ -0.08
SHMT2-222ENST00000555774 PALB2Q86YC2 1186 aa14.56□□□□□ -0.08
SHMT2-222ENST00000555774 ARHGEF19Q8IW93 802 aa14.56□□□□□ -0.08
SHMT2-222ENST00000555774 RPUSD2Q8IZ73 545 aaKnown RBP14.56□□□□□ -0.08
SHMT2-222ENST00000555774 RDH13Q8NBN7 331 aa14.56□□□□□ -0.08
SHMT2-222ENST00000555774 GMLQ99445 158 aa14.56□□□□□ -0.08
SHMT2-222ENST00000555774 ZSWIM1Q9BR11 485 aa14.56□□□□□ -0.08
SHMT2-222ENST00000555774 WNT8AQ9H1J5 351 aa14.56□□□□□ -0.08
SHMT2-222ENST00000555774 DPH5Q9H2P9 285 aa14.56□□□□□ -0.08
SHMT2-222ENST00000555774 RABEP2Q9H5N1 569 aa14.56□□□□□ -0.08
SHMT2-222ENST00000555774 CNOT10Q9H9A5 744 aaKnown RBP14.56□□□□□ -0.08
SHMT2-222ENST00000555774 ZDHHC18Q9NUE0 388 aa14.56□□□□□ -0.08
SHMT2-222ENST00000555774 PARP2Q9UGN5 583 aa14.56□□□□□ -0.08
SHMT2-222ENST00000555774 EXOC7Q9UPT5 735 aa14.56□□□□□ -0.08
SHMT2-222ENST00000555774 APBA3O96018 575 aa14.55□□□□□ -0.08
SHMT2-222ENST00000555774 NUDT17P0C025 328 aa14.55□□□□□ -0.08
SHMT2-222ENST00000555774 CHRNA5P30532 468 aa14.55□□□□□ -0.08
SHMT2-222ENST00000555774 HPDP32754 393 aaPredicted RBP14.55□□□□□ -0.08
SHMT2-222ENST00000555774 HSPA1LP34931 641 aa14.55□□□□□ -0.08
SHMT2-222ENST00000555774 MXI1P50539 228 aa14.55□□□□□ -0.08
SHMT2-222ENST00000555774 NCKAP1LP55160 1127 aa14.55□□□□□ -0.08
SHMT2-222ENST00000555774 DLG4P78352 724 aa14.55□□□□□ -0.08
SHMT2-222ENST00000555774 ARMC9Q7Z3E5 817 aa14.55□□□□□ -0.08
SHMT2-222ENST00000555774 JAMLQ86YT9 394 aa14.55□□□□□ -0.08
SHMT2-222ENST00000555774 MICALL1Q8N3F8 863 aa14.55□□□□□ -0.08
SHMT2-222ENST00000555774 OR2W6PQ8NHA6 318 aa14.55□□□□□ -0.08
SHMT2-222ENST00000555774 SLC20A1Q8WUM9 679 aa14.55□□□□□ -0.08
SHMT2-222ENST00000555774 TRIM51Q9BSJ1 452 aa14.55□□□□□ -0.08
SHMT2-222ENST00000555774 FAM129AQ9BZQ8 928 aa14.55□□□□□ -0.08
SHMT2-222ENST00000555774 CENPHQ9H3R5 247 aa14.55□□□□□ -0.08
SHMT2-222ENST00000555774 DDX39AO00148 427 aaKnown RBP14.55□□□□□ -0.08
SHMT2-222ENST00000555774 PODXLO00592 558 aa14.55□□□□□ -0.08
SHMT2-222ENST00000555774 ASNSP08243 561 aa14.55□□□□□ -0.08
SHMT2-222ENST00000555774 CTNNA2P26232 953 aa14.55□□□□□ -0.08
SHMT2-222ENST00000555774 TKFCQ3LXA3 575 aa14.55□□□□□ -0.08
SHMT2-222ENST00000555774 C1orf220Q5T0J3 134 aa14.55□□□□□ -0.08
SHMT2-222ENST00000555774 SEL1L2Q5TEA6 688 aa14.55□□□□□ -0.08
SHMT2-222ENST00000555774 HAUS6Q7Z4H7 955 aa14.55□□□□□ -0.08
SHMT2-222ENST00000555774 C4orf19Q8IY42 314 aa14.55□□□□□ -0.08
SHMT2-222ENST00000555774 FAM71AQ8IYT1 594 aa14.55□□□□□ -0.08
SHMT2-222ENST00000555774 OGFOD1Q8N543 542 aa14.55□□□□□ -0.08
SHMT2-222ENST00000555774 MTMR14Q8NCE2 650 aa14.55□□□□□ -0.08
SHMT2-222ENST00000555774 ALG3Q92685 438 aa14.55□□□□□ -0.08
SHMT2-222ENST00000555774 PCIF1Q9H4Z3 704 aa14.55□□□□□ -0.08
SHMT2-222ENST00000555774 PCYOX1Q9UHG3 505 aa14.55□□□□□ -0.08
SHMT2-222ENST00000555774 PNMA2Q9UL42 364 aa14.55□□□□□ -0.08
SHMT2-222ENST00000555774 NR2E1Q9Y466 385 aa14.55□□□□□ -0.08
SHMT2-222ENST00000555774 GCLMP48507 274 aa14.54□□□□□ -0.08
SHMT2-222ENST00000555774 MAP3K10Q02779 954 aa14.54□□□□□ -0.08
SHMT2-222ENST00000555774 ENPEPQ07075 957 aa14.54□□□□□ -0.08
SHMT2-222ENST00000555774 OTUD6BQ8N6M0 293 aa14.54□□□□□ -0.08
SHMT2-222ENST00000555774 CLEC4DQ8WXI8 215 aa14.54□□□□□ -0.08
SHMT2-222ENST00000555774 CBWD1Q9BRT8 395 aa14.54□□□□□ -0.08
SHMT2-222ENST00000555774 FBXO28Q9NVF7 368 aa14.54□□□□□ -0.08
SHMT2-222ENST00000555774 NOCTQ9UK39 431 aaKnown RBP14.54□□□□□ -0.08
SHMT2-222ENST00000555774 GMNCA6NCL1 334 aa14.54□□□□□ -0.08
SHMT2-222ENST00000555774 E7EVH7 732 aa14.54□□□□□ -0.08
SHMT2-222ENST00000555774 KIAA0391O15091 583 aaKnown RBP14.54□□□□□ -0.08
SHMT2-222ENST00000555774 YWHABP31946 246 aaKnown RBP14.54□□□□□ -0.08
SHMT2-222ENST00000555774 PTGIRP43119 386 aa14.54□□□□□ -0.08
SHMT2-222ENST00000555774 JAK3P52333 1124 aa14.54□□□□□ -0.08
SHMT2-222ENST00000555774 MFAP3P55082 362 aa14.54□□□□□ -0.08
SHMT2-222ENST00000555774 IFFO1Q0D2I5 559 aa14.54□□□□□ -0.08
SHMT2-222ENST00000555774 ZYXQ15942 572 aaKnown RBP14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms