RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 TNIP3Q96KP6 325 aa9.24□□□□□ -0.93
NUP54-215ENST00000514313 GORASP1Q9BQQ3 440 aa9.24□□□□□ -0.93
NUP54-215ENST00000514313 KMT5AQ9NQR1 393 aa9.24□□□□□ -0.93
NUP54-215ENST00000514313 NR2E3Q9Y5X4 410 aa9.24□□□□□ -0.93
NUP54-215ENST00000514313 FAM171A2A8MVW0 826 aa9.23□□□□□ -0.93
NUP54-215ENST00000514313 PEX2P28328 305 aa9.23□□□□□ -0.93
NUP54-215ENST00000514313 ALDH5A1P51649 535 aaPredicted RBP9.23□□□□□ -0.93
NUP54-215ENST00000514313 SRSF3P84103 164 aaKnown RBP9.23□□□□□ -0.93
NUP54-215ENST00000514313 LRP8Q14114 963 aa9.23□□□□□ -0.93
NUP54-215ENST00000514313 KCNMB1Q16558 191 aa9.23□□□□□ -0.93
NUP54-215ENST00000514313 WDR72Q3MJ13 1102 aa9.23□□□□□ -0.93
NUP54-215ENST00000514313 RNF220Q5VTB9 566 aa9.23□□□□□ -0.93
NUP54-215ENST00000514313 TMEM200BQ69YZ2 307 aa9.23□□□□□ -0.93
NUP54-215ENST00000514313 XRRA1Q6P2D8 792 aa9.23□□□□□ -0.93
NUP54-215ENST00000514313 B3GNT8Q7Z7M8 397 aa9.23□□□□□ -0.93
NUP54-215ENST00000514313 DAAM2Q86T65 1068 aa9.23□□□□□ -0.93
NUP54-215ENST00000514313 SRLQ86TD4 932 aa9.23□□□□□ -0.93
NUP54-215ENST00000514313 ZSWIM9Q86XI8 627 aa9.23□□□□□ -0.93
NUP54-215ENST00000514313 FAM129CQ86XR2 697 aa9.23□□□□□ -0.93
NUP54-215ENST00000514313 ZNF526Q8TF50 670 aaPredicted RBP9.23□□□□□ -0.93
NUP54-215ENST00000514313 HOXB13Q92826 284 aaPredicted RBP9.23□□□□□ -0.93
NUP54-215ENST00000514313 PTPRHQ9HD43 1115 aa9.23□□□□□ -0.93
NUP54-215ENST00000514313 NLRC4Q9NPP4 1024 aa9.23□□□□□ -0.93
NUP54-215ENST00000514313 PCDHB1Q9Y5F3 818 aa9.23□□□□□ -0.93
NUP54-215ENST00000514313 GOLIM4O00461 696 aa9.22□□□□□ -0.93
NUP54-215ENST00000514313 LY86O95711 162 aa9.22□□□□□ -0.93
NUP54-215ENST00000514313 CACNB3P54284 484 aa9.22□□□□□ -0.93
NUP54-215ENST00000514313 CD69Q07108 199 aa9.22□□□□□ -0.93
NUP54-215ENST00000514313 CBLL1Q75N03 491 aa9.22□□□□□ -0.93
NUP54-215ENST00000514313 OTOP2Q7RTS6 562 aa9.22□□□□□ -0.93
NUP54-215ENST00000514313 LDHDQ86WU2 507 aa9.22□□□□□ -0.93
NUP54-215ENST00000514313 VPS37AQ8NEZ2 397 aa9.22□□□□□ -0.93
NUP54-215ENST00000514313 GPR156Q8NFN8 814 aa9.22□□□□□ -0.93
NUP54-215ENST00000514313 KLHDC4Q8TBB5 520 aa9.22□□□□□ -0.93
NUP54-215ENST00000514313 RAB24Q969Q5 203 aa9.22□□□□□ -0.93
NUP54-215ENST00000514313 PAWRQ96IZ0 340 aaKnown RBP9.22□□□□□ -0.93
NUP54-215ENST00000514313 CLIC6Q96NY7 704 aa9.22□□□□□ -0.93
NUP54-215ENST00000514313 C7orf25Q9BPX7 421 aa9.22□□□□□ -0.93
NUP54-215ENST00000514313 SAE1Q9UBE0 346 aaPredicted RBP9.22□□□□□ -0.93
NUP54-215ENST00000514313 PCDHA5Q9Y5H7 936 aa9.22□□□□□ -0.93
NUP54-215ENST00000514313 A0A1W2PR48 441 aa9.21□□□□□ -0.94
NUP54-215ENST00000514313 IQCJ-SCHIP1C9J366 451 aaPredicted RBP9.21□□□□□ -0.94
NUP54-215ENST00000514313 CTSSP25774 331 aa9.21□□□□□ -0.94
NUP54-215ENST00000514313 TM4SF4P48230 202 aa9.21□□□□□ -0.94
NUP54-215ENST00000514313 CDR1P51861 262 aa9.21□□□□□ -0.94
NUP54-215ENST00000514313 GP2P55259 537 aaKnown RBP9.21□□□□□ -0.94
NUP54-215ENST00000514313 TARBP2Q15633 366 aaKnown RBP9.21□□□□□ -0.94
NUP54-215ENST00000514313 GRAMD1BQ3KR37 738 aa9.21□□□□□ -0.94
NUP54-215ENST00000514313 PPP4R3AQ6IN85 833 aa9.21□□□□□ -0.94
NUP54-215ENST00000514313 RHOT1Q8IXI2 618 aa9.21□□□□□ -0.94
NUP54-215ENST00000514313 FAM186BQ8IYM0 893 aa9.21□□□□□ -0.94
NUP54-215ENST00000514313 PLBD2Q8NHP8 589 aa9.21□□□□□ -0.94
NUP54-215ENST00000514313 NSUN6Q8TEA1 469 aaKnown RBP9.21□□□□□ -0.94
NUP54-215ENST00000514313 WRNIP1Q96S55 665 aa9.21□□□□□ -0.94
NUP54-215ENST00000514313 MYD88Q99836 296 aa9.21□□□□□ -0.94
NUP54-215ENST00000514313 CNTD2Q9H8S5 307 aa9.21□□□□□ -0.94
NUP54-215ENST00000514313 RSAD1Q9HA92 442 aa9.21□□□□□ -0.94
NUP54-215ENST00000514313 FNIP2Q9P278 1114 aa9.21□□□□□ -0.94
NUP54-215ENST00000514313 CROTQ9UKG9 612 aa9.21□□□□□ -0.94
NUP54-215ENST00000514313 A0A0G2JNJ9 132 aa9.2□□□□□ -0.94
NUP54-215ENST00000514313 LRRC14BA6NHZ5 514 aa9.2□□□□□ -0.94
NUP54-215ENST00000514313 HYAL3O43820 417 aaPredicted RBP9.2□□□□□ -0.94
NUP54-215ENST00000514313 AKR1B10O60218 316 aa9.2□□□□□ -0.94
NUP54-215ENST00000514313 HNRNPLP14866 589 aaKnown RBP eCLIP9.2□□□□□ -0.94
NUP54-215ENST00000514313 MEF2AQ02078 507 aaPredicted RBP9.2□□□□□ -0.94
NUP54-215ENST00000514313 C4orf46Q504U0 113 aa9.2□□□□□ -0.94
NUP54-215ENST00000514313 ABHD15Q6UXT9 468 aa9.2□□□□□ -0.94
NUP54-215ENST00000514313 MAEAQ7L5Y9 396 aa9.2□□□□□ -0.94
NUP54-215ENST00000514313 DRC7Q8IY82 874 aa9.2□□□□□ -0.94
NUP54-215ENST00000514313 PIK3C3Q8NEB9 887 aa9.2□□□□□ -0.94
NUP54-215ENST00000514313 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.2□□□□□ -0.94
NUP54-215ENST00000514313 LRTOMTQ8WZ04 291 aa9.2□□□□□ -0.94
NUP54-215ENST00000514313 NT5C1BQ96P26 610 aa9.2□□□□□ -0.94
NUP54-215ENST00000514313 NOX5Q96PH1 765 aa9.2□□□□□ -0.94
NUP54-215ENST00000514313 PLCB1Q9NQ66 1216 aa9.2□□□□□ -0.94
NUP54-215ENST00000514313 SIRT5Q9NXA8 310 aa9.2□□□□□ -0.94
NUP54-215ENST00000514313 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.2□□□□□ -0.94
NUP54-215ENST00000514313 Q9UFV3 132 aa9.2□□□□□ -0.94
NUP54-215ENST00000514313 MBD1Q9UIS9 605 aaPredicted RBP9.2□□□□□ -0.94
NUP54-215ENST00000514313 CDC42EP3Q9UKI2 254 aa9.2□□□□□ -0.94
NUP54-215ENST00000514313 PRAMEF4O60810 478 aa9.19□□□□□ -0.94
NUP54-215ENST00000514313 FOSP01100 380 aaPredicted RBP9.19□□□□□ -0.94
NUP54-215ENST00000514313 PFKLP17858 780 aa9.19□□□□□ -0.94
NUP54-215ENST00000514313 ADSLP30566 484 aaPredicted RBP9.19□□□□□ -0.94
NUP54-215ENST00000514313 RAB1AP62820 205 aa9.19□□□□□ -0.94
NUP54-215ENST00000514313 CCDC157Q569K6 752 aa9.19□□□□□ -0.94
NUP54-215ENST00000514313 FAM83BQ5T0W9 1011 aa9.19□□□□□ -0.94
NUP54-215ENST00000514313 TTC7BQ86TV6 843 aa9.19□□□□□ -0.94
NUP54-215ENST00000514313 NKD2Q969F2 451 aaPredicted RBP9.19□□□□□ -0.94
NUP54-215ENST00000514313 CDK5RAP3Q96JB5 506 aa9.19□□□□□ -0.94
NUP54-215ENST00000514313 WDR92Q96MX6 357 aa9.19□□□□□ -0.94
NUP54-215ENST00000514313 TBCBQ99426 244 aa9.19□□□□□ -0.94
NUP54-215ENST00000514313 C11orf84Q9BUA3 381 aaPredicted RBP9.19□□□□□ -0.94
NUP54-215ENST00000514313 OSBPL6Q9BZF3 934 aa9.19□□□□□ -0.94
NUP54-215ENST00000514313 PCDH18Q9HCL0 1135 aa9.19□□□□□ -0.94
NUP54-215ENST00000514313 RTEL1Q9NZ71 1219 aa9.19□□□□□ -0.94
NUP54-215ENST00000514313 DMTF1Q9Y222 760 aa9.19□□□□□ -0.94
NUP54-215ENST00000514313 MYOCOSA0A1B0GUC4 107 aa9.18□□□□□ -0.94
NUP54-215ENST00000514313 SLC16A6O15403 523 aa9.18□□□□□ -0.94
NUP54-215ENST00000514313 SGTAO43765 313 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms