RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 TFDP1Q14186 410 aa14.12□□□□□ -0.15
USP40-208ENST00000450966 BARGINQ6ZT62 677 aa14.12□□□□□ -0.15
USP40-208ENST00000450966 GGA2Q9UJY4 613 aa14.12□□□□□ -0.15
USP40-208ENST00000450966 TRIM33Q9UPN9 1127 aa14.12□□□□□ -0.15
USP40-208ENST00000450966 ALKQ9UM73 1620 aa14.12□□□□□ -0.15
USP40-208ENST00000450966 WDR47O94967 919 aa14.12□□□□□ -0.15
USP40-208ENST00000450966 TUBA3EQ6PEY2 450 aa14.12□□□□□ -0.15
USP40-208ENST00000450966 HDDC2Q7Z4H3 204 aa14.12□□□□□ -0.15
USP40-208ENST00000450966 THAP9Q9H5L6 903 aa14.12□□□□□ -0.15
USP40-208ENST00000450966 MAGEF1Q9HAY2 307 aa14.12□□□□□ -0.15
USP40-208ENST00000450966 DAPK2Q9UIK4 370 aa14.12□□□□□ -0.15
USP40-208ENST00000450966 GOLGA8TH3BQL2 631 aa14.11□□□□□ -0.15
USP40-208ENST00000450966 CAPN9O14815 690 aa14.11□□□□□ -0.15
USP40-208ENST00000450966 C21orf2O43822 256 aa14.11□□□□□ -0.15
USP40-208ENST00000450966 GOLGA8HP0CJ92 632 aa14.11□□□□□ -0.15
USP40-208ENST00000450966 ATP6V1B1P15313 513 aa14.11□□□□□ -0.15
USP40-208ENST00000450966 RFC5P40937 340 aa14.11□□□□□ -0.15
USP40-208ENST00000450966 GYG1P46976 350 aa14.11□□□□□ -0.15
USP40-208ENST00000450966 CTDSPL2Q05D32 466 aa14.11□□□□□ -0.15
USP40-208ENST00000450966 SLFN13Q68D06 897 aa14.11□□□□□ -0.15
USP40-208ENST00000450966 DHX40Q8IX18 779 aaKnown RBP14.11□□□□□ -0.15
USP40-208ENST00000450966 MAGEC3Q8TD91 643 aa14.11□□□□□ -0.15
USP40-208ENST00000450966 CSRNP1Q96S65 589 aa14.11□□□□□ -0.15
USP40-208ENST00000450966 ZSCAN10Q96SZ4 725 aaPredicted RBP14.11□□□□□ -0.15
USP40-208ENST00000450966 MRPL44Q9H9J2 332 aaKnown RBP14.11□□□□□ -0.15
USP40-208ENST00000450966 GGT7Q9UJ14 662 aa14.11□□□□□ -0.15
USP40-208ENST00000450966 GCNT3O95395 438 aa14.11□□□□□ -0.15
USP40-208ENST00000450966 XRCC5P13010 732 aaKnown RBP14.11□□□□□ -0.15
USP40-208ENST00000450966 CEP78Q5JTW2 689 aa14.11□□□□□ -0.15
USP40-208ENST00000450966 LINC00301Q8NCQ3 95 aa14.11□□□□□ -0.15
USP40-208ENST00000450966 PPP2R3CQ969Q6 453 aa14.11□□□□□ -0.15
USP40-208ENST00000450966 KCNK16Q96T55 309 aa14.11□□□□□ -0.15
USP40-208ENST00000450966 XPO1O14980 1071 aaKnown RBP14.11□□□□□ -0.15
USP40-208ENST00000450966 CYP2E1P05181 493 aaPredicted RBP14.11□□□□□ -0.15
USP40-208ENST00000450966 PTPROQ16827 1216 aa14.11□□□□□ -0.15
USP40-208ENST00000450966 CABP7Q86V35 215 aa14.11□□□□□ -0.15
USP40-208ENST00000450966 NDNQ99608 321 aa14.11□□□□□ -0.15
USP40-208ENST00000450966 ARMCX3Q9UH62 379 aaPredicted RBP14.11□□□□□ -0.15
USP40-208ENST00000450966 CIDEBQ9UHD4 219 aa14.11□□□□□ -0.15
USP40-208ENST00000450966 PTPRMP28827 1452 aa14.11□□□□□ -0.15
USP40-208ENST00000450966 F8VZ95 297 aa14.11□□□□□ -0.15
USP40-208ENST00000450966 GAS7O60861 476 aa14.11□□□□□ -0.15
USP40-208ENST00000450966 GUCY1B2O75343 617 aa14.11□□□□□ -0.15
USP40-208ENST00000450966 C21orf59P57076 290 aa14.11□□□□□ -0.15
USP40-208ENST00000450966 LRRC14Q15048 493 aa14.11□□□□□ -0.15
USP40-208ENST00000450966 APOA5Q6Q788 366 aa14.11□□□□□ -0.15
USP40-208ENST00000450966 PI4KBQ9UBF8 816 aa14.11□□□□□ -0.15
USP40-208ENST00000450966 CPSF1Q10570 1443 aaKnown RBP14.11□□□□□ -0.15
USP40-208ENST00000450966 ZC3H13Q5T200 1668 aaKnown RBP14.11□□□□□ -0.15
USP40-208ENST00000450966 CDC42BPAQ5VT25 1732 aa14.11□□□□□ -0.15
USP40-208ENST00000450966 DEPTORQ8TB45 409 aa14.11□□□□□ -0.15
USP40-208ENST00000450966 FAM193BQ96PV7 902 aaPredicted RBP14.11□□□□□ -0.15
USP40-208ENST00000450966 AFG3L2Q9Y4W6 797 aa14.11□□□□□ -0.15
USP40-208ENST00000450966 C1orf167Q5SNV9 1468 aa14.11□□□□□ -0.15
USP40-208ENST00000450966 USP17L12C9JPN9 530 aa14.1□□□□□ -0.15
USP40-208ENST00000450966 USP17L21D6R901 530 aa14.1□□□□□ -0.15
USP40-208ENST00000450966 USP17L8P0C7I0 530 aa14.1□□□□□ -0.15
USP40-208ENST00000450966 ALAS1P13196 640 aa14.1□□□□□ -0.15
USP40-208ENST00000450966 PTPN21Q16825 1174 aa14.1□□□□□ -0.15
USP40-208ENST00000450966 TXNRD1Q16881 649 aa14.1□□□□□ -0.15
USP40-208ENST00000450966 KCTD21Q4G0X4 260 aa14.1□□□□□ -0.15
USP40-208ENST00000450966 FAM47CQ5HY64 1035 aa14.1□□□□□ -0.15
USP40-208ENST00000450966 LUZP2Q86TE4 346 aa14.1□□□□□ -0.15
USP40-208ENST00000450966 STAMQ92783 540 aa14.1□□□□□ -0.15
USP40-208ENST00000450966 SCYL1Q96KG9 808 aa14.1□□□□□ -0.15
USP40-208ENST00000450966 LRRC1Q9BTT6 524 aa14.1□□□□□ -0.15
USP40-208ENST00000450966 ANKFY1Q9P2R3 1169 aa14.1□□□□□ -0.15
USP40-208ENST00000450966 IFNL3Q8IZI9 196 aa14.1□□□□□ -0.15
USP40-208ENST00000450966 FBXO40Q9UH90 709 aa14.1□□□□□ -0.15
USP40-208ENST00000450966 GTPBP10A4D1E9 387 aaKnown RBP14.1□□□□□ -0.15
USP40-208ENST00000450966 DNALI1O14645 258 aaPredicted RBP14.1□□□□□ -0.15
USP40-208ENST00000450966 RSBN1Q5VWQ0 802 aaPredicted RBP14.1□□□□□ -0.15
USP40-208ENST00000450966 RAPGEF5Q92565 580 aa14.1□□□□□ -0.15
USP40-208ENST00000450966 COL15A1P39059 1388 aa14.1□□□□□ -0.15
USP40-208ENST00000450966 ATXN2Q99700 1313 aaKnown RBP14.1□□□□□ -0.15
USP40-208ENST00000450966 PPARGP37231 505 aaPredicted RBP14.1□□□□□ -0.15
USP40-208ENST00000450966 ATP1A4Q13733 1029 aa14.1□□□□□ -0.15
USP40-208ENST00000450966 LRRC36Q1X8D7 754 aa14.1□□□□□ -0.15
USP40-208ENST00000450966 MYOCDQ8IZQ8 938 aa14.1□□□□□ -0.15
USP40-208ENST00000450966 MMS19Q96T76 1030 aa14.1□□□□□ -0.15
USP40-208ENST00000450966 TEKT3Q9BXF9 490 aa14.1□□□□□ -0.15
USP40-208ENST00000450966 GREM2Q9H772 168 aa14.1□□□□□ -0.15
USP40-208ENST00000450966 NSFP46459 744 aaKnown RBP14.09□□□□□ -0.15
USP40-208ENST00000450966 SCNN1DP51172 638 aa14.09□□□□□ -0.15
USP40-208ENST00000450966 CYP27A1Q02318 531 aa14.09□□□□□ -0.15
USP40-208ENST00000450966 TMEM63BQ5T3F8 832 aa14.09□□□□□ -0.15
USP40-208ENST00000450966 PLEKHA7Q6IQ23 1121 aa14.09□□□□□ -0.15
USP40-208ENST00000450966 RINT1Q6NUQ1 792 aa14.09□□□□□ -0.15
USP40-208ENST00000450966 RFX8Q6ZV50 586 aa14.09□□□□□ -0.15
USP40-208ENST00000450966 SFR1Q86XK3 245 aa14.09□□□□□ -0.15
USP40-208ENST00000450966 TRIM50Q86XT4 487 aa14.09□□□□□ -0.15
USP40-208ENST00000450966 OR9Q1Q8NGQ5 310 aa14.09□□□□□ -0.15
USP40-208ENST00000450966 TNNC2P02585 160 aa14.09□□□□□ -0.15
USP40-208ENST00000450966 ATP1A1P05023 1023 aaKnown RBP14.09□□□□□ -0.15
USP40-208ENST00000450966 YARSP54577 528 aaKnown RBP14.09□□□□□ -0.15
USP40-208ENST00000450966 RESTQ13127 1097 aa14.09□□□□□ -0.15
USP40-208ENST00000450966 MAN2A1Q16706 1144 aa14.09□□□□□ -0.15
USP40-208ENST00000450966 AMNQ9BXJ7 453 aa14.09□□□□□ -0.15
USP40-208ENST00000450966 ESYT3A0FGR9 886 aa14.09□□□□□ -0.15
USP40-208ENST00000450966 NBNO60934 754 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms