RNA–Protein interactions for RNA: ENST00000359759.8

COL18A1-203, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL18A1, Length 6,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-203ENST00000359759 MYOM2P54296 1465 aa17.01■□□□□ 0.31
COL18A1-203ENST00000359759 NR1H3Q13133 447 aa17.01■□□□□ 0.31
COL18A1-203ENST00000359759 COBLL1Q53SF7 1204 aa17.01■□□□□ 0.31
COL18A1-203ENST00000359759 WDR48Q8TAF3 677 aa17.01■□□□□ 0.31
COL18A1-203ENST00000359759 ARHGEF1Q92888 912 aaKnown RBP17.01■□□□□ 0.31
COL18A1-203ENST00000359759 QTRT2Q9H974 415 aaKnown RBP17.01■□□□□ 0.31
COL18A1-203ENST00000359759 ABCB11O95342 1321 aa17.01■□□□□ 0.31
COL18A1-203ENST00000359759 ENO4A6NNW6 628 aa17.01■□□□□ 0.31
COL18A1-203ENST00000359759 PRR23D1E9PI22 279 aaPredicted RBP17.01■□□□□ 0.31
COL18A1-203ENST00000359759 NBNO60934 754 aa17.01■□□□□ 0.31
COL18A1-203ENST00000359759 PRR23D2P0DMB1 279 aaPredicted RBP17.01■□□□□ 0.31
COL18A1-203ENST00000359759 TBL3Q12788 808 aaKnown RBP17.01■□□□□ 0.31
COL18A1-203ENST00000359759 PLEKHM3Q6ZWE6 761 aa17.01■□□□□ 0.31
COL18A1-203ENST00000359759 CATSPER4Q7RTX7 472 aa17.01■□□□□ 0.31
COL18A1-203ENST00000359759 TAF1DQ9H5J8 278 aaPredicted RBP17.01■□□□□ 0.31
COL18A1-203ENST00000359759 FAM96AQ9H5X1 160 aa17.01■□□□□ 0.31
COL18A1-203ENST00000359759 SP110Q9HB58 689 aa17.01■□□□□ 0.31
COL18A1-203ENST00000359759 MYO1GB0I1T2 1018 aa17.01■□□□□ 0.31
COL18A1-203ENST00000359759 RAD17O75943 681 aa17.01■□□□□ 0.31
COL18A1-203ENST00000359759 RECQLP46063 649 aaPredicted RBP17.01■□□□□ 0.31
COL18A1-203ENST00000359759 SLFN12LQ6IEE8 588 aa17.01■□□□□ 0.31
COL18A1-203ENST00000359759 NPHS2Q9NP85 383 aa17.01■□□□□ 0.31
COL18A1-203ENST00000359759 EFCAB14O75071 495 aa17■□□□□ 0.31
COL18A1-203ENST00000359759 FTLP02792 175 aaPredicted RBP17■□□□□ 0.31
COL18A1-203ENST00000359759 CAV1Q03135 178 aa17■□□□□ 0.31
COL18A1-203ENST00000359759 GCOM2Q9BZD3 368 aaPredicted RBP17■□□□□ 0.31
COL18A1-203ENST00000359759 LGALS16A8MUM7 142 aa17■□□□□ 0.31
COL18A1-203ENST00000359759 KCNH2Q12809 1159 aa17■□□□□ 0.31
COL18A1-203ENST00000359759 ANKRD40Q6AI12 368 aa17■□□□□ 0.31
COL18A1-203ENST00000359759 ARMC2Q8NEN0 867 aa17■□□□□ 0.31
COL18A1-203ENST00000359759 ZNF555Q8NEP9 628 aa17■□□□□ 0.31
COL18A1-203ENST00000359759 PIK3R5Q8WYR1 880 aa17■□□□□ 0.31
COL18A1-203ENST00000359759 INPP5DQ92835 1189 aa17■□□□□ 0.31
COL18A1-203ENST00000359759 SERPINB13Q9UIV8 391 aa17■□□□□ 0.31
COL18A1-203ENST00000359759 ZNF185O15231 689 aa17■□□□□ 0.31
COL18A1-203ENST00000359759 THEMIS2Q5TEJ8 643 aa17■□□□□ 0.31
COL18A1-203ENST00000359759 IZUMO3Q5VZ72 239 aa17■□□□□ 0.31
COL18A1-203ENST00000359759 MS4A14Q96JA4 679 aa17■□□□□ 0.31
COL18A1-203ENST00000359759 BUD13Q9BRD0 619 aaKnown RBP eCLIP17■□□□□ 0.316e-15■■□□□ 13.9
COL18A1-203ENST00000359759 ORC4O43929 436 aa17■□□□□ 0.31
COL18A1-203ENST00000359759 RXRBP28702 533 aa17■□□□□ 0.31
COL18A1-203ENST00000359759 GNA15P30679 374 aa17■□□□□ 0.31
COL18A1-203ENST00000359759 COPB2P35606 906 aa17■□□□□ 0.31
COL18A1-203ENST00000359759 KCNQ4P56696 695 aa17■□□□□ 0.31
COL18A1-203ENST00000359759 KRT17Q04695 432 aa17■□□□□ 0.31
COL18A1-203ENST00000359759 CACNB2Q08289 660 aaPredicted RBP17■□□□□ 0.31
COL18A1-203ENST00000359759 UNC13DQ70J99 1090 aa17■□□□□ 0.31
COL18A1-203ENST00000359759 C11orf74Q86VG3 221 aa17■□□□□ 0.31
COL18A1-203ENST00000359759 TTC13Q8NBP0 860 aa17■□□□□ 0.31
COL18A1-203ENST00000359759 GIMAP4Q9NUV9 329 aa17■□□□□ 0.31
COL18A1-203ENST00000359759 CLDN3O15551 220 aa17■□□□□ 0.31
COL18A1-203ENST00000359759 CDK8P49336 464 aa17■□□□□ 0.31
COL18A1-203ENST00000359759 RPS6P62753 249 aaKnown RBP17■□□□□ 0.31
COL18A1-203ENST00000359759 GALNT4Q8N4A0 578 aa17■□□□□ 0.31
COL18A1-203ENST00000359759 SMAD5Q99717 465 aaKnown RBP17■□□□□ 0.31
COL18A1-203ENST00000359759 CPVLQ9H3G5 476 aa17■□□□□ 0.31
COL18A1-203ENST00000359759 TRIM45Q9H8W5 580 aaPredicted RBP17■□□□□ 0.31
COL18A1-203ENST00000359759 PIH1D3Q9NQM4 214 aaKnown RBP17■□□□□ 0.31
COL18A1-203ENST00000359759 ZSCAN32Q9NX65 697 aa17■□□□□ 0.31
COL18A1-203ENST00000359759 PCDHA6Q9UN73 950 aa17■□□□□ 0.31
COL18A1-203ENST00000359759 PCDHA8Q9Y5H6 950 aa17■□□□□ 0.31
COL18A1-203ENST00000359759 H0Y626 953 aa16.99■□□□□ 0.31
COL18A1-203ENST00000359759 TRIM16O95361 564 aa16.99■□□□□ 0.31
COL18A1-203ENST00000359759 TYK2P29597 1187 aa16.99■□□□□ 0.31
COL18A1-203ENST00000359759 COASYQ13057 564 aa16.99■□□□□ 0.31
COL18A1-203ENST00000359759 OR6P1Q8NGX9 317 aa16.99■□□□□ 0.31
COL18A1-203ENST00000359759 CDHR1Q96JP9 859 aa16.99■□□□□ 0.31
COL18A1-203ENST00000359759 AKAP10O43572 662 aa16.99■□□□□ 0.31
COL18A1-203ENST00000359759 ARIH2O95376 493 aa16.99■□□□□ 0.31
COL18A1-203ENST00000359759 SREK1IP1Q8N9Q2 155 aaPredicted RBP16.99■□□□□ 0.31
COL18A1-203ENST00000359759 RBM46Q8TBY0 533 aaKnown RBP16.99■□□□□ 0.31
COL18A1-203ENST00000359759 TSPY1Q01534 308 aa16.99■□□□□ 0.31
COL18A1-203ENST00000359759 INTS2Q9H0H0 1204 aaKnown RBP16.99■□□□□ 0.31
COL18A1-203ENST00000359759 PRKAG2Q9UGJ0 569 aa16.99■□□□□ 0.31
COL18A1-203ENST00000359759 STXBP2Q15833 593 aa16.99■□□□□ 0.31
COL18A1-203ENST00000359759 ZNF568Q3ZCX4 644 aa16.99■□□□□ 0.31
COL18A1-203ENST00000359759 NAALADL2Q58DX5 795 aa16.99■□□□□ 0.31
COL18A1-203ENST00000359759 ARHGAP18Q8N392 663 aa16.99■□□□□ 0.31
COL18A1-203ENST00000359759 TMEM260Q9NX78 707 aa16.99■□□□□ 0.31
COL18A1-203ENST00000359759 MIF4GDA9UHW6 222 aaKnown RBP16.99■□□□□ 0.31
COL18A1-203ENST00000359759 hCG_1984214I3L0E3 225 aa16.99■□□□□ 0.31
COL18A1-203ENST00000359759 MYO1DO94832 1006 aa16.99■□□□□ 0.31
COL18A1-203ENST00000359759 ARSEP51690 589 aa16.99■□□□□ 0.31
COL18A1-203ENST00000359759 ALCAMQ13740 583 aa16.99■□□□□ 0.31
COL18A1-203ENST00000359759 CCDC144BQ3MJ40 725 aa16.99■□□□□ 0.31
COL18A1-203ENST00000359759 TMEM154Q6P9G4 183 aa16.99■□□□□ 0.31
COL18A1-203ENST00000359759 DDX42Q86XP3 938 aaKnown RBP eCLIP16.99■□□□□ 0.31
COL18A1-203ENST00000359759 RHPN2Q8IUC4 686 aa16.99■□□□□ 0.31
COL18A1-203ENST00000359759 STX19Q8N4C7 294 aa16.99■□□□□ 0.31
COL18A1-203ENST00000359759 ZNF713Q8N859 430 aaPredicted RBP16.99■□□□□ 0.31
COL18A1-203ENST00000359759 TMEM35BQ8NCS4 154 aa16.99■□□□□ 0.31
COL18A1-203ENST00000359759 RAD54LQ92698 747 aa16.99■□□□□ 0.31
COL18A1-203ENST00000359759 TMEM161AQ9NX61 479 aa16.99■□□□□ 0.31
COL18A1-203ENST00000359759 AIPL1Q9NZN9 384 aa16.99■□□□□ 0.31
COL18A1-203ENST00000359759 ZNF518AQ6AHZ1 1483 aa16.99■□□□□ 0.31
COL18A1-203ENST00000359759 CCDC78A2IDD5 438 aa16.99■□□□□ 0.31
COL18A1-203ENST00000359759 LCP1P13796 627 aa16.99■□□□□ 0.31
COL18A1-203ENST00000359759 TCN1P20061 433 aaPredicted RBP16.99■□□□□ 0.31
COL18A1-203ENST00000359759 SERPINB10P48595 397 aa16.99■□□□□ 0.31
COL18A1-203ENST00000359759 CUL4AQ13619 759 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms