RNA–Protein interactions for RNA: ENST00000600888.2

CKS1BP3-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 3, humanhuman

BASIC

Gene CKS1BP3, Length 237 nt, Biotype processed pseudogene, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP3-201ENST00000600888 RIMS2Q9UQ26 1411 aa5□□□□□ -1.61
CKS1BP3-201ENST00000600888 NEMP1O14524 444 aa5□□□□□ -1.61
CKS1BP3-201ENST00000600888 ZEB2O60315 1214 aa5□□□□□ -1.61
CKS1BP3-201ENST00000600888 TOM1O60784 492 aa5□□□□□ -1.61
CKS1BP3-201ENST00000600888 CUTAO60888 179 aa5□□□□□ -1.61
CKS1BP3-201ENST00000600888 APEX1P27695 318 aaKnown RBP5□□□□□ -1.61
CKS1BP3-201ENST00000600888 ADCY8P40145 1251 aa5□□□□□ -1.61
CKS1BP3-201ENST00000600888 ID4P47928 161 aa5□□□□□ -1.61
CKS1BP3-201ENST00000600888 RGS3P49796 1198 aa5□□□□□ -1.61
CKS1BP3-201ENST00000600888 PHC1P78364 1004 aa5□□□□□ -1.61
CKS1BP3-201ENST00000600888 ROM1Q03395 351 aa5□□□□□ -1.61
CKS1BP3-201ENST00000600888 TOP3AQ13472 1001 aaPredicted RBP5□□□□□ -1.61
CKS1BP3-201ENST00000600888 MOGSQ13724 837 aa5□□□□□ -1.61
CKS1BP3-201ENST00000600888 CT47A1Q5JQC4 288 aaPredicted RBP5□□□□□ -1.61
CKS1BP3-201ENST00000600888 GPR158Q5T848 1215 aa5□□□□□ -1.61
CKS1BP3-201ENST00000600888 SLFN12LQ6IEE8 588 aa5□□□□□ -1.61
CKS1BP3-201ENST00000600888 AFAP1L2Q8N4X5 818 aa5□□□□□ -1.61
CKS1BP3-201ENST00000600888 ABCF1Q8NE71 845 aaKnown RBP eCLIP5□□□□□ -1.61
CKS1BP3-201ENST00000600888 RTF1Q92541 710 aaKnown RBP5□□□□□ -1.61
CKS1BP3-201ENST00000600888 TUBGCP5Q96RT8 1024 aa5□□□□□ -1.61
CKS1BP3-201ENST00000600888 ZDHHC5Q9C0B5 715 aa5□□□□□ -1.61
CKS1BP3-201ENST00000600888 SPC25Q9HBM1 224 aa5□□□□□ -1.61
CKS1BP3-201ENST00000600888 FBXO10Q9UK96 956 aa5□□□□□ -1.61
CKS1BP3-201ENST00000600888 DUSP10Q9Y6W6 482 aa5□□□□□ -1.61
CKS1BP3-201ENST00000600888 CLTCL1P53675 1640 aa5□□□□□ -1.61
CKS1BP3-201ENST00000600888 PIK3R4Q99570 1358 aa5□□□□□ -1.61
CKS1BP3-201ENST00000600888 SETBP1Q9Y6X0 1596 aa4.99□□□□□ -1.61
CKS1BP3-201ENST00000600888 NCOA3Q9Y6Q9 1424 aa4.99□□□□□ -1.61
CKS1BP3-201ENST00000600888 PPLO60437 1756 aa4.99□□□□□ -1.61
CKS1BP3-201ENST00000600888 NRXN3Q9Y4C0 1643 aa4.99□□□□□ -1.61
CKS1BP3-201ENST00000600888 A0A0G2JNJ9 132 aa4.99□□□□□ -1.61
CKS1BP3-201ENST00000600888 B4GALT3O60512 393 aa4.99□□□□□ -1.61
CKS1BP3-201ENST00000600888 DNAJC6O75061 913 aa4.99□□□□□ -1.61
CKS1BP3-201ENST00000600888 CD40P25942 277 aa4.99□□□□□ -1.61
CKS1BP3-201ENST00000600888 CNGA1P29973 690 aa4.99□□□□□ -1.61
CKS1BP3-201ENST00000600888 CSF2RBP32927 897 aa4.99□□□□□ -1.61
CKS1BP3-201ENST00000600888 LSP1P33241 339 aa4.99□□□□□ -1.61
CKS1BP3-201ENST00000600888 NFKB2Q00653 900 aa4.99□□□□□ -1.61
CKS1BP3-201ENST00000600888 EIF4HQ15056 248 aaKnown RBP4.99□□□□□ -1.61
CKS1BP3-201ENST00000600888 TERF2Q15554 542 aa4.99□□□□□ -1.61
CKS1BP3-201ENST00000600888 ATP13A4Q4VNC1 1196 aa4.99□□□□□ -1.61
CKS1BP3-201ENST00000600888 RNF187Q5TA31 235 aaPredicted RBP4.99□□□□□ -1.61
CKS1BP3-201ENST00000600888 PRAMEF9Q5VWM5 478 aa4.99□□□□□ -1.61
CKS1BP3-201ENST00000600888 GRAMD4Q6IC98 578 aa4.99□□□□□ -1.61
CKS1BP3-201ENST00000600888 TIGD7Q6NT04 549 aaPredicted RBP4.99□□□□□ -1.61
CKS1BP3-201ENST00000600888 BORAQ6PGQ7 559 aa4.99□□□□□ -1.61
CKS1BP3-201ENST00000600888 FILIP1Q7Z7B0 1213 aa4.99□□□□□ -1.61
CKS1BP3-201ENST00000600888 PHYKPLQ8IUZ5 450 aa4.99□□□□□ -1.61
CKS1BP3-201ENST00000600888 REXO1L1PQ8IX06 675 aa4.99□□□□□ -1.61
CKS1BP3-201ENST00000600888 KBTBD2Q8IY47 623 aa4.99□□□□□ -1.61
CKS1BP3-201ENST00000600888 LGI4Q8N135 537 aa4.99□□□□□ -1.61
CKS1BP3-201ENST00000600888 ZNF610Q8N9Z0 462 aa4.99□□□□□ -1.61
CKS1BP3-201ENST00000600888 ZNF496Q96IT1 587 aaPredicted RBP4.99□□□□□ -1.61
CKS1BP3-201ENST00000600888 C20orf173Q96LM9 149 aa4.99□□□□□ -1.61
CKS1BP3-201ENST00000600888 CARD11Q9BXL7 1154 aa4.99□□□□□ -1.61
CKS1BP3-201ENST00000600888 ADAM7Q9H2U9 754 aa4.99□□□□□ -1.61
CKS1BP3-201ENST00000600888 Q9UFV3 132 aa4.99□□□□□ -1.61
CKS1BP3-201ENST00000600888 CDC42EP3Q9UKI2 254 aa4.99□□□□□ -1.61
CKS1BP3-201ENST00000600888 ADAMTS13Q76LX8 1427 aa4.98□□□□□ -1.61
CKS1BP3-201ENST00000600888 NEXMIFQ5QGS0 1516 aa4.98□□□□□ -1.61
CKS1BP3-201ENST00000600888 SETD1AO15047 1707 aaKnown RBP4.98□□□□□ -1.61
CKS1BP3-201ENST00000600888 IFT172Q9UG01 1749 aa4.98□□□□□ -1.61
CKS1BP3-201ENST00000600888 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP4.98□□□□□ -1.61
CKS1BP3-201ENST00000600888 BRINP1O60477 761 aa4.98□□□□□ -1.61
CKS1BP3-201ENST00000600888 B4GALT4O60513 344 aa4.98□□□□□ -1.61
CKS1BP3-201ENST00000600888 MAFO75444 373 aaPredicted RBP4.98□□□□□ -1.61
CKS1BP3-201ENST00000600888 PRPF6O94906 941 aaKnown RBP4.98□□□□□ -1.61
CKS1BP3-201ENST00000600888 EYA4O95677 639 aa4.98□□□□□ -1.61
CKS1BP3-201ENST00000600888 CPEP16870 476 aa4.98□□□□□ -1.61
CKS1BP3-201ENST00000600888 ETV4P43268 484 aa4.98□□□□□ -1.61
CKS1BP3-201ENST00000600888 KCNQ1P51787 676 aa4.98□□□□□ -1.61
CKS1BP3-201ENST00000600888 MYBPC3Q14896 1274 aa4.98□□□□□ -1.61
CKS1BP3-201ENST00000600888 NOLC1Q14978 699 aaKnown RBP eCLIP4.98□□□□□ -1.61
CKS1BP3-201ENST00000600888 DDB1Q16531 1140 aa4.98□□□□□ -1.61
CKS1BP3-201ENST00000600888 ZFYVE27Q5T4F4 411 aa4.98□□□□□ -1.61
CKS1BP3-201ENST00000600888 BROXQ5VW32 411 aa4.98□□□□□ -1.61
CKS1BP3-201ENST00000600888 TMEM200BQ69YZ2 307 aa4.98□□□□□ -1.61
CKS1BP3-201ENST00000600888 OTOP2Q7RTS6 562 aa4.98□□□□□ -1.61
CKS1BP3-201ENST00000600888 FERMT3Q86UX7 667 aa4.98□□□□□ -1.61
CKS1BP3-201ENST00000600888 IFNL2Q8IZJ0 200 aa4.98□□□□□ -1.61
CKS1BP3-201ENST00000600888 C7orf31Q8N865 590 aa4.98□□□□□ -1.61
CKS1BP3-201ENST00000600888 SLC5A5Q92911 643 aa4.98□□□□□ -1.61
CKS1BP3-201ENST00000600888 MYL10Q9BUA6 226 aa4.98□□□□□ -1.61
CKS1BP3-201ENST00000600888 SEMA4AQ9H3S1 761 aa4.98□□□□□ -1.61
CKS1BP3-201ENST00000600888 POFUT1Q9H488 388 aa4.98□□□□□ -1.61
CKS1BP3-201ENST00000600888 USP36Q9P275 1121 aaKnown RBP4.98□□□□□ -1.61
CKS1BP3-201ENST00000600888 RAPGEFL1Q9UHV5 662 aa4.98□□□□□ -1.61
CKS1BP3-201ENST00000600888 MSRAQ9UJ68 235 aa4.98□□□□□ -1.61
CKS1BP3-201ENST00000600888 INVSQ9Y283 1065 aa4.98□□□□□ -1.61
CKS1BP3-201ENST00000600888 XRN1Q8IZH2 1706 aaKnown RBP4.97□□□□□ -1.61
CKS1BP3-201ENST00000600888 A0A0G2JLL6 359 aaPredicted RBP4.97□□□□□ -1.61
CKS1BP3-201ENST00000600888 PRICKLE3O43900 615 aaPredicted RBP4.97□□□□□ -1.61
CKS1BP3-201ENST00000600888 APOL3O95236 402 aa4.97□□□□□ -1.61
CKS1BP3-201ENST00000600888 ZNF888P0CJ79 500 aaPredicted RBP4.97□□□□□ -1.61
CKS1BP3-201ENST00000600888 POU3F3P20264 500 aaPredicted RBP4.97□□□□□ -1.61
CKS1BP3-201ENST00000600888 CNR2P34972 360 aa4.97□□□□□ -1.61
CKS1BP3-201ENST00000600888 ADCY2Q08462 1091 aa4.97□□□□□ -1.61
CKS1BP3-201ENST00000600888 MAP3K12Q12852 859 aa4.97□□□□□ -1.61
CKS1BP3-201ENST00000600888 USP10Q14694 798 aaKnown RBP4.97□□□□□ -1.61
CKS1BP3-201ENST00000600888 TRIM68Q6AZZ1 485 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 80.3 ms