RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 PPP1R12BO60237 982 aaPredicted RBP5.69□□□□□ -1.5
USP28-213ENST00000544967 ABL1P00519 1130 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 NUDT17P0C025 328 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 CCNB1P14635 433 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 CD44P16070 742 aaKnown RBP5.69□□□□□ -1.5
USP28-213ENST00000544967 SMARCA1P28370 1054 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 GBP1P32455 592 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 ATP1A2P50993 1020 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 LACTBP83111 547 aaPredicted RBP5.69□□□□□ -1.5
USP28-213ENST00000544967 ATP2B2Q01814 1243 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 CTDSPL2Q05D32 466 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 CBLBQ13191 982 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 CLUL1Q15846 466 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 IRGCQ6NXR0 463 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 CCDC174Q6PII3 467 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 TRIM74Q86UV6 250 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 TRIM73Q86UV7 250 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 MAPKAPK5Q8IW41 473 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 GSPT2Q8IYD1 628 aaKnown RBP5.69□□□□□ -1.5
USP28-213ENST00000544967 B4GALNT2Q8NHY0 566 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 AGAP11Q8TF27 550 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 SDR42E1Q8WUS8 393 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 ATXN2LQ8WWM7 1075 aaKnown RBP5.69□□□□□ -1.5
USP28-213ENST00000544967 LPAR1Q92633 364 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 MTMR8Q96EF0 704 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 TMEM237Q96Q45 408 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 CHP1Q99653 195 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 CNNM2Q9H8M5 875 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 ZWILCHQ9H900 591 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 NHEJ1Q9H9Q4 299 aaPredicted RBP5.69□□□□□ -1.5
USP28-213ENST00000544967 ZNF287Q9HBT7 754 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 INCENPQ9NQS7 918 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 MORF4L1Q9UBU8 362 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 PLAGL2Q9UPG8 496 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 PHF24Q9UPV7 400 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 PLAAQ9Y263 795 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 SART1O43290 800 aaKnown RBP5.68□□□□□ -1.5
USP28-213ENST00000544967 KRT14P02533 472 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 TFRCP02786 760 aaKnown RBP5.68□□□□□ -1.5
USP28-213ENST00000544967 GNAZP19086 355 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 VAMP1P23763 118 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 ANXA13P27216 316 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 ABL2P42684 1182 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 GTF2A2P52657 109 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 SEC24CP53992 1094 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 CACNB3P54284 484 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 ANTXR2P58335 489 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 ATP11AP98196 1134 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 EVX2Q03828 476 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 PPP1R7Q15435 360 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 LRRC23Q53EV4 343 aaPredicted RBP5.68□□□□□ -1.5
USP28-213ENST00000544967 ANKRD20A2Q5SQ80 823 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 AKNAD1Q5T1N1 836 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 ANKRD20A1Q5TYW2 823 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 ANKRD20A3Q5VUR7 823 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 ASRGL1Q7L266 308 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 TRPM8Q7Z2W7 1104 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 SH2D3CQ8N5H7 860 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 NUP133Q8WUM0 1156 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 CASS4Q9NQ75 786 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 IL17RBQ9NRM6 502 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 WBP1LQ9NX94 342 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 CTTNBP2NLQ9P2B4 639 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 BAIAP2L1Q9UHR4 511 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 ENC1O14682 589 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 HNRNPCL1O60812 293 aaKnown RBP5.68□□□□□ -1.5
USP28-213ENST00000544967 MTA2O94776 668 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 TRAPPC10P48553 1259 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 CTCFP49711 727 aaPredicted RBP5.68□□□□□ -1.5
USP28-213ENST00000544967 METAP2P50579 478 aaKnown RBP eCLIP5.68□□□□□ -1.5
USP28-213ENST00000544967 ZNF844Q08AG5 666 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 BNIP1Q12981 228 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 ACVR2BQ13705 512 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 LCA5Q86VQ0 697 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 DGKHQ86XP1 1220 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 REPS2Q8NFH8 660 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 DHTKD1Q96HY7 919 aaPredicted RBP5.68□□□□□ -1.5
USP28-213ENST00000544967 PBKQ96KB5 322 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 SLX1AQ9BQ83 275 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 TINF2Q9BSI4 451 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 OSBPL1AQ9BXW6 950 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 SLITRK6Q9H5Y7 841 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 IP6K2Q9UHH9 426 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 USP17L5A8MUK1 530 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 USP17L12C9JPN9 530 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 USP17L21D6R901 530 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 FOXN1O15353 648 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 DTNBO60941 627 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 SRGAP2O75044 1071 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 CAND2O75155 1236 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 HEXIM1O94992 359 aaKnown RBP5.68□□□□□ -1.5
USP28-213ENST00000544967 CYP2D6P10635 497 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 KCNA2P16389 499 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 MMP13P45452 471 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 CLK1P49759 484 aaKnown RBP5.68□□□□□ -1.5
USP28-213ENST00000544967 VEGFBP49765 207 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 TOB1P50616 345 aaPredicted RBP5.68□□□□□ -1.5
USP28-213ENST00000544967 UBXN1Q04323 297 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 GSTA3Q16772 222 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 C10orf76Q5T2E6 689 aa5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms