RNA–Protein interactions for RNA: ENST00000529182.5

VPS28-210, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2 BASIC

Gene VPS28, Length 1,010 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-210ENST00000529182 POU5F1BQ06416 359 aa14.79□□□□□ -0.04
VPS28-210ENST00000529182 AMHR2Q16671 573 aa14.79□□□□□ -0.04
VPS28-210ENST00000529182 NAALADL2Q58DX5 795 aa14.79□□□□□ -0.04
VPS28-210ENST00000529182 ARSHQ5FYA8 562 aa14.79□□□□□ -0.04
VPS28-210ENST00000529182 AXDND1Q5T1B0 1012 aaPredicted RBP14.79□□□□□ -0.04
VPS28-210ENST00000529182 ATL3Q6DD88 541 aa14.79□□□□□ -0.04
VPS28-210ENST00000529182 SHC4Q6S5L8 630 aa14.79□□□□□ -0.04
VPS28-210ENST00000529182 GPBP1Q86WP2 473 aa14.79□□□□□ -0.04
VPS28-210ENST00000529182 IFNLR1Q8IU57 520 aaPredicted RBP14.79□□□□□ -0.04
VPS28-210ENST00000529182 ADGRA3Q8IWK6 1321 aa14.79□□□□□ -0.04
VPS28-210ENST00000529182 KCNG4Q8TDN1 519 aa14.79□□□□□ -0.04
VPS28-210ENST00000529182 LARP4BQ92615 738 aaKnown RBP14.79□□□□□ -0.04
VPS28-210ENST00000529182 CPB2Q96IY4 423 aa14.79□□□□□ -0.04
VPS28-210ENST00000529182 GUCD1Q96NT3 240 aa14.79□□□□□ -0.04
VPS28-210ENST00000529182 RC3H2Q9HBD1 1191 aaKnown RBP14.79□□□□□ -0.04
VPS28-210ENST00000529182 AGPAT5Q9NUQ2 364 aa14.79□□□□□ -0.04
VPS28-210ENST00000529182 MTMR10Q9NXD2 777 aa14.79□□□□□ -0.04
VPS28-210ENST00000529182 CCDC39Q9UFE4 941 aa14.79□□□□□ -0.04
VPS28-210ENST00000529182 CFAP45Q9UL16 551 aa14.79□□□□□ -0.04
VPS28-210ENST00000529182 LRFN2Q9ULH4 789 aa14.79□□□□□ -0.04
VPS28-210ENST00000529182 PCDHA7Q9UN72 937 aa14.79□□□□□ -0.04
VPS28-210ENST00000529182 PCDHB7Q9Y5E2 793 aa14.79□□□□□ -0.04
VPS28-210ENST00000529182 B4GALT5O43286 388 aa14.78□□□□□ -0.04
VPS28-210ENST00000529182 TSPAN1O60635 241 aa14.78□□□□□ -0.04
VPS28-210ENST00000529182 CUTAO60888 179 aa14.78□□□□□ -0.04
VPS28-210ENST00000529182 DGKIO75912 1065 aa14.78□□□□□ -0.04
VPS28-210ENST00000529182 ERLIN2O94905 339 aa14.78□□□□□ -0.04
VPS28-210ENST00000529182 STAG3L1P0CL83 205 aa14.78□□□□□ -0.04
VPS28-210ENST00000529182 LIG1P18858 919 aa14.78□□□□□ -0.04
VPS28-210ENST00000529182 GUCY2CP25092 1073 aa14.78□□□□□ -0.04
VPS28-210ENST00000529182 NAMPTP43490 491 aa14.78□□□□□ -0.04
VPS28-210ENST00000529182 PEX3P56589 373 aa14.78□□□□□ -0.04
VPS28-210ENST00000529182 RRAGBQ5VZM2 374 aa14.78□□□□□ -0.04
VPS28-210ENST00000529182 CDCA2Q69YH5 1023 aaPredicted RBP14.78□□□□□ -0.04
VPS28-210ENST00000529182 TWF2Q6IBS0 349 aaKnown RBP14.78□□□□□ -0.04
VPS28-210ENST00000529182 ECHDC2Q86YB7 292 aa14.78□□□□□ -0.04
VPS28-210ENST00000529182 PDILTQ8N807 584 aa14.78□□□□□ -0.04
VPS28-210ENST00000529182 RNF169Q8NCN4 708 aa14.78□□□□□ -0.04
VPS28-210ENST00000529182 DEPTORQ8TB45 409 aa14.78□□□□□ -0.04
VPS28-210ENST00000529182 SP7Q8TDD2 431 aaPredicted RBP14.78□□□□□ -0.04
VPS28-210ENST00000529182 LEO1Q8WVC0 666 aaPredicted RBP14.78□□□□□ -0.04
VPS28-210ENST00000529182 ZNF689Q96CS4 500 aaPredicted RBP14.78□□□□□ -0.04
VPS28-210ENST00000529182 IFT74Q96LB3 600 aa14.78□□□□□ -0.04
VPS28-210ENST00000529182 NFKBIZQ9BYH8 718 aa14.78□□□□□ -0.04
VPS28-210ENST00000529182 PRDM12Q9H4Q4 367 aa14.78□□□□□ -0.04
VPS28-210ENST00000529182 CHST12Q9NRB3 414 aa14.78□□□□□ -0.04
VPS28-210ENST00000529182 RCOR1Q9UKL0 485 aa14.78□□□□□ -0.04
VPS28-210ENST00000529182 MTUS1Q9ULD2 1270 aa14.78□□□□□ -0.04
VPS28-210ENST00000529182 USP20Q9Y2K6 914 aa14.78□□□□□ -0.04
VPS28-210ENST00000529182 COL4A6Q14031 1691 aa14.77□□□□□ -0.04
VPS28-210ENST00000529182 EPOPA6NHQ4 379 aa14.77□□□□□ -0.05
VPS28-210ENST00000529182 TTLL13PA6NNM8 815 aa14.77□□□□□ -0.05
VPS28-210ENST00000529182 RFXAPO00287 272 aa14.77□□□□□ -0.05
VPS28-210ENST00000529182 EDN1P05305 212 aa14.77□□□□□ -0.05
VPS28-210ENST00000529182 FGFR1P11362 822 aa14.77□□□□□ -0.05
VPS28-210ENST00000529182 NPTX2P47972 431 aa14.77□□□□□ -0.05
VPS28-210ENST00000529182 KRT85P78386 507 aa14.77□□□□□ -0.05
VPS28-210ENST00000529182 LONRF3Q496Y0 759 aa14.77□□□□□ -0.05
VPS28-210ENST00000529182 PAN2Q504Q3 1202 aaKnown RBP14.77□□□□□ -0.05
VPS28-210ENST00000529182 CDR2LQ86X02 465 aaPredicted RBP14.77□□□□□ -0.05
VPS28-210ENST00000529182 ZBTB8OSQ8IWT0 167 aa14.77□□□□□ -0.05
VPS28-210ENST00000529182 MYLIPQ8WY64 445 aa14.77□□□□□ -0.05
VPS28-210ENST00000529182 ARNTL2Q8WYA1 636 aa14.77□□□□□ -0.05
VPS28-210ENST00000529182 DRC1Q96MC2 740 aa14.77□□□□□ -0.05
VPS28-210ENST00000529182 REEP2Q9BRK0 252 aa14.77□□□□□ -0.05
VPS28-210ENST00000529182 C17orf80Q9BSJ5 609 aa14.77□□□□□ -0.05
VPS28-210ENST00000529182 TMEM161AQ9NX61 479 aa14.77□□□□□ -0.05
VPS28-210ENST00000529182 DACT1Q9NYF0 836 aa14.77□□□□□ -0.05
VPS28-210ENST00000529182 EYSQ5T1H1 3165 aa14.77□□□□□ -0.05
VPS28-210ENST00000529182 A0A0U1RQF3 1178 aa14.76□□□□□ -0.05
VPS28-210ENST00000529182 CCDC169A6NNP5 214 aa14.76□□□□□ -0.05
VPS28-210ENST00000529182 ATF7P17544 494 aaPredicted RBP14.76□□□□□ -0.05
VPS28-210ENST00000529182 ARF4P18085 180 aaPredicted RBP14.76□□□□□ -0.05
VPS28-210ENST00000529182 ANP32AP39687 249 aaKnown RBP14.76□□□□□ -0.05
VPS28-210ENST00000529182 STAT6P42226 847 aa14.76□□□□□ -0.05
VPS28-210ENST00000529182 NUCB2P80303 420 aa14.76□□□□□ -0.05
VPS28-210ENST00000529182 DMP1Q13316 513 aaPredicted RBP14.76□□□□□ -0.05
VPS28-210ENST00000529182 BTG3Q14201 252 aaPredicted RBP14.76□□□□□ -0.05
VPS28-210ENST00000529182 PPP2R5AQ15172 486 aa14.76□□□□□ -0.05
VPS28-210ENST00000529182 UBXN11Q5T124 520 aa14.76□□□□□ -0.05
VPS28-210ENST00000529182 FAM43BQ6ZT52 329 aaPredicted RBP14.76□□□□□ -0.05
VPS28-210ENST00000529182 LPPQ93052 612 aa14.76□□□□□ -0.05
VPS28-210ENST00000529182 SPATA32Q96LK8 384 aa14.76□□□□□ -0.05
VPS28-210ENST00000529182 CDX2Q99626 313 aaPredicted RBP14.76□□□□□ -0.05
VPS28-210ENST00000529182 TIPINQ9BVW5 301 aa14.76□□□□□ -0.05
VPS28-210ENST00000529182 CCDC113Q9H0I3 377 aa14.76□□□□□ -0.05
VPS28-210ENST00000529182 C2orf40Q9H1Z8 148 aa14.76□□□□□ -0.05
VPS28-210ENST00000529182 FZD8Q9H461 694 aa14.76□□□□□ -0.05
VPS28-210ENST00000529182 ELAC1Q9H777 363 aaKnown RBP14.76□□□□□ -0.05
VPS28-210ENST00000529182 FAM105AQ9NUU6 356 aa14.76□□□□□ -0.05
VPS28-210ENST00000529182 RNF19AQ9NV58 838 aa14.76□□□□□ -0.05
VPS28-210ENST00000529182 KCND2Q9NZV8 630 aa14.76□□□□□ -0.05
VPS28-210ENST00000529182 STK17AQ9UEE5 414 aa14.76□□□□□ -0.05
VPS28-210ENST00000529182 TRANK1O15050 2925 aa14.75□□□□□ -0.05
VPS28-210ENST00000529182 TBKBP1A7MCY6 615 aa14.75□□□□□ -0.05
VPS28-210ENST00000529182 MEIS3P2A8K0S8 358 aa14.75□□□□□ -0.05
VPS28-210ENST00000529182 SLC16A4O15374 487 aa14.75□□□□□ -0.05
VPS28-210ENST00000529182 PRKCBP05771 671 aa14.75□□□□□ -0.05
VPS28-210ENST00000529182 KRT18P05783 430 aaKnown RBP14.75□□□□□ -0.05
VPS28-210ENST00000529182 PLS3P13797 630 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms