RNA–Protein interactions for RNA: ENST00000472217.1

USF1-204, Transcript of upstream transcription factor 1, humanhuman

TSL 2

Gene USF1, Length 1,097 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-204ENST00000472217 LONRF3Q496Y0 759 aa10.06□□□□□ -0.8
USF1-204ENST00000472217 SRGAP1Q7Z6B7 1085 aa10.06□□□□□ -0.8
USF1-204ENST00000472217 FERMT3Q86UX7 667 aa10.06□□□□□ -0.8
USF1-204ENST00000472217 EFHBQ8N7U6 833 aa10.06□□□□□ -0.8
USF1-204ENST00000472217 RNF149Q8NC42 400 aa10.06□□□□□ -0.8
USF1-204ENST00000472217 FBXO18Q8NFZ0 1043 aa10.06□□□□□ -0.8
USF1-204ENST00000472217 MICAL1Q8TDZ2 1067 aa10.06□□□□□ -0.8
USF1-204ENST00000472217 PIGOQ8TEQ8 1089 aa10.06□□□□□ -0.8
USF1-204ENST00000472217 MRPS27Q92552 414 aaKnown RBP10.06□□□□□ -0.8
USF1-204ENST00000472217 LPPQ93052 612 aa10.06□□□□□ -0.8
USF1-204ENST00000472217 MSLNLQ96KJ4 702 aa10.06□□□□□ -0.8
USF1-204ENST00000472217 MRPL9Q9BYD2 267 aaKnown RBP10.06□□□□□ -0.8
USF1-204ENST00000472217 FOXP1Q9H334 677 aaPredicted RBP10.06□□□□□ -0.8
USF1-204ENST00000472217 ANKEF1Q9NU02 776 aa10.06□□□□□ -0.8
USF1-204ENST00000472217 AGPAT5Q9NUQ2 364 aa10.06□□□□□ -0.8
USF1-204ENST00000472217 FAM105AQ9NUU6 356 aa10.06□□□□□ -0.8
USF1-204ENST00000472217 FAM50BQ9Y247 325 aa10.06□□□□□ -0.8
USF1-204ENST00000472217 LZTS1Q9Y250 596 aa10.06□□□□□ -0.8
USF1-204ENST00000472217 BDP1A6H8Y1 2624 aa10.05□□□□□ -0.8
USF1-204ENST00000472217 A0A087WWV3 80 aa10.05□□□□□ -0.8
USF1-204ENST00000472217 FSCN2O14926 492 aa10.05□□□□□ -0.8
USF1-204ENST00000472217 PER2O15055 1255 aa10.05□□□□□ -0.8
USF1-204ENST00000472217 ASAP2O43150 1006 aa10.05□□□□□ -0.8
USF1-204ENST00000472217 MBTPS2O43462 519 aa10.05□□□□□ -0.8
USF1-204ENST00000472217 ZNF623O75123 536 aa10.05□□□□□ -0.8
USF1-204ENST00000472217 DGAT1O75907 488 aa10.05□□□□□ -0.8
USF1-204ENST00000472217 SPATA31C1P0DKV0 1188 aa10.05□□□□□ -0.8
USF1-204ENST00000472217 SKIP12755 728 aa10.05□□□□□ -0.8
USF1-204ENST00000472217 HOXA11P31270 313 aaPredicted RBP10.05□□□□□ -0.8
USF1-204ENST00000472217 SSTR3P32745 418 aaPredicted RBP10.05□□□□□ -0.8
USF1-204ENST00000472217 PPM1AP35813 382 aa10.05□□□□□ -0.8
USF1-204ENST00000472217 RARRES1P49788 294 aa10.05□□□□□ -0.8
USF1-204ENST00000472217 RBM10P98175 930 aaKnown RBP10.05□□□□□ -0.8
USF1-204ENST00000472217 ZP2Q05996 745 aa10.05□□□□□ -0.8
USF1-204ENST00000472217 GNL2Q13823 731 aaKnown RBP10.05□□□□□ -0.8
USF1-204ENST00000472217 ZNF174Q15697 407 aa10.05□□□□□ -0.8
USF1-204ENST00000472217 SMAD2Q15796 467 aaKnown RBP10.05□□□□□ -0.8
USF1-204ENST00000472217 PLPP4Q5VZY2 271 aa10.05□□□□□ -0.8
USF1-204ENST00000472217 PDE12Q6L8Q7 609 aaKnown RBP10.05□□□□□ -0.8
USF1-204ENST00000472217 GLB1LQ6UWU2 654 aa10.05□□□□□ -0.8
USF1-204ENST00000472217 NOSTRINQ8IVI9 506 aa10.05□□□□□ -0.8
USF1-204ENST00000472217 GJD3Q8N144 294 aa10.05□□□□□ -0.8
USF1-204ENST00000472217 SLC39A11Q8N1S5 342 aa10.05□□□□□ -0.8
USF1-204ENST00000472217 FAM184AQ8NB25 1140 aa10.05□□□□□ -0.8
USF1-204ENST00000472217 VN1R2Q8NFZ6 395 aa10.05□□□□□ -0.8
USF1-204ENST00000472217 TCF25Q9BQ70 676 aa10.05□□□□□ -0.8
USF1-204ENST00000472217 C1QTNF1Q9BXJ1 281 aa10.05□□□□□ -0.8
USF1-204ENST00000472217 EPHX3Q9H6B9 360 aa10.05□□□□□ -0.8
USF1-204ENST00000472217 TLE6Q9H808 572 aa10.05□□□□□ -0.8
USF1-204ENST00000472217 ENTPD7Q9NQZ7 604 aa10.05□□□□□ -0.8
USF1-204ENST00000472217 SPG21Q9NZD8 308 aa10.05□□□□□ -0.8
USF1-204ENST00000472217 CLEC1BQ9P126 229 aa10.05□□□□□ -0.8
USF1-204ENST00000472217 PUF60Q9UHX1 559 aaKnown RBP10.05□□□□□ -0.8
USF1-204ENST00000472217 CD207Q9UJ71 328 aa10.05□□□□□ -0.8
USF1-204ENST00000472217 BARX2Q9UMQ3 279 aaPredicted RBP10.05□□□□□ -0.8
USF1-204ENST00000472217 PCDHB2Q9Y5E7 798 aa10.05□□□□□ -0.8
USF1-204ENST00000472217 NT5C1B-RDH14C9J2C7 533 aa10.04□□□□□ -0.8
USF1-204ENST00000472217 TSPAN1O60635 241 aa10.04□□□□□ -0.8
USF1-204ENST00000472217 USO1O60763 962 aaKnown RBP10.04□□□□□ -0.8
USF1-204ENST00000472217 ZC3H11AO75152 810 aaKnown RBP eCLIP10.04□□□□□ -0.8
USF1-204ENST00000472217 MED24O75448 989 aa10.04□□□□□ -0.8
USF1-204ENST00000472217 ERLIN2O94905 339 aa10.04□□□□□ -0.8
USF1-204ENST00000472217 OR52Z1P0C646 297 aa10.04□□□□□ -0.8
USF1-204ENST00000472217 TECP42680 631 aa10.04□□□□□ -0.8
USF1-204ENST00000472217 ALDH7A1P49419 539 aaKnown RBP10.04□□□□□ -0.8
USF1-204ENST00000472217 BCAR1P56945 870 aa10.04□□□□□ -0.8
USF1-204ENST00000472217 PTENP60484 403 aa10.04□□□□□ -0.8
USF1-204ENST00000472217 KRT17Q04695 432 aa10.04□□□□□ -0.8
USF1-204ENST00000472217 ORC2Q13416 577 aaPredicted RBP10.04□□□□□ -0.8
USF1-204ENST00000472217 SMAD4Q13485 552 aaKnown RBP10.04□□□□□ -0.8
USF1-204ENST00000472217 CAPSQ13938 189 aa10.04□□□□□ -0.8
USF1-204ENST00000472217 MXD4Q14582 209 aaPredicted RBP10.04□□□□□ -0.8
USF1-204ENST00000472217 NBR1Q14596 966 aa10.04□□□□□ -0.8
USF1-204ENST00000472217 RABEP1Q15276 862 aa10.04□□□□□ -0.8
USF1-204ENST00000472217 NOMO2Q5JPE7 1267 aa10.04□□□□□ -0.8
USF1-204ENST00000472217 TTC38Q5R3I4 469 aa10.04□□□□□ -0.8
USF1-204ENST00000472217 UBXN11Q5T124 520 aa10.04□□□□□ -0.8
USF1-204ENST00000472217 AGMOQ6ZNB7 445 aa10.04□□□□□ -0.8
USF1-204ENST00000472217 CATSPER3Q86XQ3 398 aa10.04□□□□□ -0.8
USF1-204ENST00000472217 ADHFE1Q8IWW8 467 aa10.04□□□□□ -0.8
USF1-204ENST00000472217 SMRP1Q8NCR6 262 aa10.04□□□□□ -0.8
USF1-204ENST00000472217 ASAP3Q8TDY4 903 aa10.04□□□□□ -0.8
USF1-204ENST00000472217 RSPH1Q8WYR4 309 aa10.04□□□□□ -0.8
USF1-204ENST00000472217 PGBD4Q96DM1 585 aa10.04□□□□□ -0.8
USF1-204ENST00000472217 CCDC43Q96MW1 224 aaKnown RBP10.04□□□□□ -0.8
USF1-204ENST00000472217 TUFT1Q9NNX1 390 aa10.04□□□□□ -0.8
USF1-204ENST00000472217 TBC1D13Q9NVG8 400 aa10.04□□□□□ -0.8
USF1-204ENST00000472217 PRKAG3Q9UGI9 489 aa10.04□□□□□ -0.8
USF1-204ENST00000472217 INPP5FQ9Y2H2 1132 aa10.04□□□□□ -0.8
USF1-204ENST00000472217 MYO7AQ13402 2215 aa10.04□□□□□ -0.8
USF1-204ENST00000472217 MUC3AQ02505 3323 aa10.04□□□□□ -0.8
USF1-204ENST00000472217 FSD2A1L4K1 749 aa10.03□□□□□ -0.8
USF1-204ENST00000472217 C19orf67A6NJJ6 358 aa10.03□□□□□ -0.8
USF1-204ENST00000472217 HIDE1A8MVS5 230 aa10.03□□□□□ -0.8
USF1-204ENST00000472217 PI4K2BG5E9Z4 385 aa10.03□□□□□ -0.8
USF1-204ENST00000472217 B4GALT3O60512 393 aa10.03□□□□□ -0.8
USF1-204ENST00000472217 OFD1O75665 1012 aa10.03□□□□□ -0.8
USF1-204ENST00000472217 EYA4O95677 639 aa10.03□□□□□ -0.8
USF1-204ENST00000472217 XRCC6P12956 609 aaKnown RBP eCLIP10.03□□□□□ -0.8
USF1-204ENST00000472217 GLRA2P23416 452 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms