RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 PABPC4Q13310 644 aaKnown RBP eCLIP6.23□□□□□ -1.41
VPS41-211ENST00000466017 MOGSQ13724 837 aa6.23□□□□□ -1.41
VPS41-211ENST00000466017 COL19A1Q14993 1142 aa6.23□□□□□ -1.41
VPS41-211ENST00000466017 ARL6IP4Q66PJ3 421 aaKnown RBP6.23□□□□□ -1.41
VPS41-211ENST00000466017 ADALQ6DHV7 355 aa6.23□□□□□ -1.41
VPS41-211ENST00000466017 ZNF765Q7L2R6 523 aa6.23□□□□□ -1.41
VPS41-211ENST00000466017 RASGRP2Q7LDG7 609 aa6.23□□□□□ -1.41
VPS41-211ENST00000466017 FERMT3Q86UX7 667 aa6.23□□□□□ -1.41
VPS41-211ENST00000466017 MCF2L2Q86YR7 1114 aa6.23□□□□□ -1.41
VPS41-211ENST00000466017 JMYQ8N9B5 988 aa6.23□□□□□ -1.41
VPS41-211ENST00000466017 REPS2Q8NFH8 660 aa6.23□□□□□ -1.41
VPS41-211ENST00000466017 KCNG4Q8TDN1 519 aa6.23□□□□□ -1.41
VPS41-211ENST00000466017 LEO1Q8WVC0 666 aaPredicted RBP6.23□□□□□ -1.41
VPS41-211ENST00000466017 CUL5Q93034 780 aa6.23□□□□□ -1.41
VPS41-211ENST00000466017 GAL3ST3Q96A11 431 aa6.23□□□□□ -1.41
VPS41-211ENST00000466017 COA7Q96BR5 231 aa6.23□□□□□ -1.41
VPS41-211ENST00000466017 SPATA32Q96LK8 384 aa6.23□□□□□ -1.41
VPS41-211ENST00000466017 USP28Q96RU2 1077 aa6.23□□□□□ -1.41
VPS41-211ENST00000466017 CPVLQ9H3G5 476 aa6.23□□□□□ -1.41
VPS41-211ENST00000466017 RPAP3Q9H6T3 665 aaPredicted RBP6.23□□□□□ -1.41
VPS41-211ENST00000466017 PSTPIP2Q9H939 334 aa6.23□□□□□ -1.41
VPS41-211ENST00000466017 NMRK2Q9NPI5 230 aa6.23□□□□□ -1.41
VPS41-211ENST00000466017 RABGAP1Q9Y3P9 1069 aa6.23□□□□□ -1.41
VPS41-211ENST00000466017 ZNF536O15090 1300 aa6.23□□□□□ -1.41
VPS41-211ENST00000466017 PASKQ96RG2 1323 aa6.23□□□□□ -1.41
VPS41-211ENST00000466017 CYP3A7-CYP3A51PA0A087WV96 503 aa6.22□□□□□ -1.41
VPS41-211ENST00000466017 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.22□□□□□ -1.41
VPS41-211ENST00000466017 FAM237AA0A1B0GTK4 181 aa6.22□□□□□ -1.41
VPS41-211ENST00000466017 CCDC194A0A1B0GVG4 234 aa6.22□□□□□ -1.41
VPS41-211ENST00000466017 hCG_1642624A0A1W2PR95 340 aa6.22□□□□□ -1.41
VPS41-211ENST00000466017 TRIM75PA6NK02 468 aa6.22□□□□□ -1.41
VPS41-211ENST00000466017 VWA5AO00534 786 aa6.22□□□□□ -1.41
VPS41-211ENST00000466017 CYP3A4P08684 503 aa6.22□□□□□ -1.41
VPS41-211ENST00000466017 GCFC2P16383 781 aaKnown RBP6.22□□□□□ -1.41
VPS41-211ENST00000466017 NCLP19338 710 aaKnown RBP6.22□□□□□ -1.41
VPS41-211ENST00000466017 CYP3A7P24462 503 aa6.22□□□□□ -1.41
VPS41-211ENST00000466017 CIITAP33076 1130 aa6.22□□□□□ -1.41
VPS41-211ENST00000466017 COPB2P35606 906 aa6.22□□□□□ -1.41
VPS41-211ENST00000466017 ADCY7P51828 1080 aa6.22□□□□□ -1.41
VPS41-211ENST00000466017 GTF2A2P52657 109 aa6.22□□□□□ -1.41
VPS41-211ENST00000466017 HMGCS2P54868 508 aa6.22□□□□□ -1.41
VPS41-211ENST00000466017 RING1Q06587 406 aa6.22□□□□□ -1.41
VPS41-211ENST00000466017 SNAPC2Q13487 334 aa6.22□□□□□ -1.41
VPS41-211ENST00000466017 GNL2Q13823 731 aaKnown RBP6.22□□□□□ -1.41
VPS41-211ENST00000466017 NONOQ15233 471 aaKnown RBP eCLIP6.22□□□□□ -1.41
VPS41-211ENST00000466017 SF3A1Q15459 793 aaKnown RBP6.22□□□□□ -1.41
VPS41-211ENST00000466017 KLHL40Q2TBA0 621 aa6.22□□□□□ -1.41
VPS41-211ENST00000466017 CST9Q5W186 159 aa6.22□□□□□ -1.41
VPS41-211ENST00000466017 PPP4R3AQ6IN85 833 aa6.22□□□□□ -1.41
VPS41-211ENST00000466017 FAM173BQ6P4H8 233 aa6.22□□□□□ -1.41
VPS41-211ENST00000466017 PAOXQ6QHF9 649 aa6.22□□□□□ -1.41
VPS41-211ENST00000466017 DLK2Q6UY11 383 aa6.22□□□□□ -1.41
VPS41-211ENST00000466017 HEATR3Q7Z4Q2 680 aa6.22□□□□□ -1.41
VPS41-211ENST00000466017 CCDC84Q86UT8 332 aaPredicted RBP6.22□□□□□ -1.41
VPS41-211ENST00000466017 HOMER1Q86YM7 354 aa6.22□□□□□ -1.41
VPS41-211ENST00000466017 ELOA2Q8IYF1 753 aaPredicted RBP6.22□□□□□ -1.41
VPS41-211ENST00000466017 SPICE1Q8N0Z3 855 aa6.22□□□□□ -1.41
VPS41-211ENST00000466017 REXO1Q8N1G1 1221 aaKnown RBP6.22□□□□□ -1.41
VPS41-211ENST00000466017 CRYGNQ8WXF5 182 aa6.22□□□□□ -1.41
VPS41-211ENST00000466017 ISL2Q96A47 359 aa6.22□□□□□ -1.41
VPS41-211ENST00000466017 OPTNQ96CV9 577 aa6.22□□□□□ -1.41
VPS41-211ENST00000466017 MBOAT7Q96N66 472 aa6.22□□□□□ -1.41
VPS41-211ENST00000466017 NUP88Q99567 741 aaPredicted RBP6.22□□□□□ -1.41
VPS41-211ENST00000466017 ZFYVE1Q9HBF4 777 aa6.22□□□□□ -1.41
VPS41-211ENST00000466017 PPM1HQ9ULR3 514 aa6.22□□□□□ -1.41
VPS41-211ENST00000466017 AGTPBP1Q9UPW5 1226 aa6.22□□□□□ -1.41
VPS41-211ENST00000466017 CNPY2Q9Y2B0 182 aa6.22□□□□□ -1.41
VPS41-211ENST00000466017 TLR6Q9Y2C9 796 aa6.22□□□□□ -1.41
VPS41-211ENST00000466017 SRPRBQ9Y5M8 271 aaKnown RBP6.22□□□□□ -1.41
VPS41-211ENST00000466017 SYNGAP1Q96PV0 1343 aa6.22□□□□□ -1.41
VPS41-211ENST00000466017 RLFQ13129 1914 aa6.21□□□□□ -1.41
VPS41-211ENST00000466017 LOC102724159A0A0B4J2E5 919 aa6.21□□□□□ -1.42
VPS41-211ENST00000466017 GCOM1H8Y6P7 765 aaPredicted RBP6.21□□□□□ -1.42
VPS41-211ENST00000466017 TRAF5O00463 557 aa6.21□□□□□ -1.42
VPS41-211ENST00000466017 TBX3O15119 743 aa6.21□□□□□ -1.42
VPS41-211ENST00000466017 SPTLC2O15270 562 aa6.21□□□□□ -1.42
VPS41-211ENST00000466017 SLC26A4O43511 780 aa6.21□□□□□ -1.42
VPS41-211ENST00000466017 EDIL3O43854 480 aa6.21□□□□□ -1.42
VPS41-211ENST00000466017 CUTAO60888 179 aa6.21□□□□□ -1.42
VPS41-211ENST00000466017 RNGTTO60942 597 aaKnown RBP6.21□□□□□ -1.42
VPS41-211ENST00000466017 FLOT1O75955 427 aa6.21□□□□□ -1.42
VPS41-211ENST00000466017 TOMM70O94826 608 aa6.21□□□□□ -1.42
VPS41-211ENST00000466017 CELF2O95319 508 aaKnown RBP6.21□□□□□ -1.42
VPS41-211ENST00000466017 SLC25A27O95847 323 aa6.21□□□□□ -1.42
VPS41-211ENST00000466017 SLFN14P0C7P3 912 aa6.21□□□□□ -1.42
VPS41-211ENST00000466017 POLR2MP0CAP2 368 aa6.21□□□□□ -1.42
VPS41-211ENST00000466017 CETPP11597 493 aa6.21□□□□□ -1.42
VPS41-211ENST00000466017 CMA1P23946 247 aa6.21□□□□□ -1.42
VPS41-211ENST00000466017 PRPHP41219 470 aa6.21□□□□□ -1.42
VPS41-211ENST00000466017 HSD17B4P51659 736 aa6.21□□□□□ -1.42
VPS41-211ENST00000466017 ATP2C1P98194 919 aaPredicted RBP6.21□□□□□ -1.42
VPS41-211ENST00000466017 FSTL1Q12841 308 aa6.21□□□□□ -1.42
VPS41-211ENST00000466017 IKQ13123 557 aaPredicted RBP6.21□□□□□ -1.42
VPS41-211ENST00000466017 PRKG1Q13976 671 aa6.21□□□□□ -1.42
VPS41-211ENST00000466017 SEPT6Q14141 434 aa6.21□□□□□ -1.42
VPS41-211ENST00000466017 STK38Q15208 465 aa6.21□□□□□ -1.42
VPS41-211ENST00000466017 PWP2Q15269 919 aaKnown RBP6.21□□□□□ -1.42
VPS41-211ENST00000466017 ZYXQ15942 572 aaKnown RBP6.21□□□□□ -1.42
VPS41-211ENST00000466017 EARS2Q5JPH6 523 aaKnown RBP6.21□□□□□ -1.42
VPS41-211ENST00000466017 TTC38Q5R3I4 469 aa6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 122.9 ms