RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 FAM105AQ9NUU6 356 aa21.61■■□□□ 1.05
USP40-207ENST00000450940 H3BQ06 376 aaPredicted RBP21.6■■□□□ 1.05
USP40-207ENST00000450940 OR52Z1P0C646 297 aa21.6■■□□□ 1.05
USP40-207ENST00000450940 HOXA11P31270 313 aaPredicted RBP21.6■■□□□ 1.05
USP40-207ENST00000450940 GTF2F1P35269 517 aaKnown RBP eCLIP21.6■■□□□ 1.05
USP40-207ENST00000450940 ARL2P36404 184 aa21.6■■□□□ 1.05
USP40-207ENST00000450940 PTENP60484 403 aa21.6■■□□□ 1.05
USP40-207ENST00000450940 TTC38Q5R3I4 469 aa21.6■■□□□ 1.05
USP40-207ENST00000450940 MRPL10Q7Z7H8 261 aaKnown RBP21.6■■□□□ 1.05
USP40-207ENST00000450940 ADGRD2Q7Z7M1 963 aa21.6■■□□□ 1.05
USP40-207ENST00000450940 CATSPER3Q86XQ3 398 aa21.6■■□□□ 1.05
USP40-207ENST00000450940 FAM178BQ8IXR5 827 aa21.6■■□□□ 1.05
USP40-207ENST00000450940 THNSL1Q8IYQ7 743 aa21.6■■□□□ 1.05
USP40-207ENST00000450940 RNF149Q8NC42 400 aa21.6■■□□□ 1.05
USP40-207ENST00000450940 HELQQ8TDG4 1101 aa21.6■■□□□ 1.05
USP40-207ENST00000450940 PIGOQ8TEQ8 1089 aa21.6■■□□□ 1.05
USP40-207ENST00000450940 MRPL9Q9BYD2 267 aaKnown RBP21.6■■□□□ 1.05
USP40-207ENST00000450940 BMP2KQ9NSY1 1161 aaPredicted RBP21.6■■□□□ 1.05
USP40-207ENST00000450940 FSCN2O14926 492 aa21.59■■□□□ 1.05
USP40-207ENST00000450940 PPM1AP35813 382 aa21.59■■□□□ 1.05
USP40-207ENST00000450940 TECP42680 631 aa21.59■■□□□ 1.05
USP40-207ENST00000450940 ERVFC1P60507 584 aa21.59■■□□□ 1.05
USP40-207ENST00000450940 DLX2Q07687 328 aaPredicted RBP21.59■■□□□ 1.05
USP40-207ENST00000450940 EFHBQ8N7U6 833 aa21.59■■□□□ 1.05
USP40-207ENST00000450940 MRPS27Q92552 414 aaKnown RBP21.59■■□□□ 1.05
USP40-207ENST00000450940 ZNF558Q96NG5 402 aa21.59■■□□□ 1.05
USP40-207ENST00000450940 UPF2Q9HAU5 1272 aaKnown RBP21.59■■□□□ 1.05
USP40-207ENST00000450940 TLR9Q9NR96 1032 aa21.59■■□□□ 1.05
USP40-207ENST00000450940 DBR1Q9UK59 544 aaKnown RBP21.59■■□□□ 1.05
USP40-207ENST00000450940 NOL7Q9UMY1 257 aaKnown RBP21.59■■□□□ 1.05
USP40-207ENST00000450940 MED24O75448 989 aa21.58■■□□□ 1.05
USP40-207ENST00000450940 IL9P15248 144 aa21.58■■□□□ 1.05
USP40-207ENST00000450940 MUTP22033 750 aa21.58■■□□□ 1.05
USP40-207ENST00000450940 RPA1P27694 616 aa21.58■■□□□ 1.05
USP40-207ENST00000450940 TOB1P50616 345 aaPredicted RBP21.58■■□□□ 1.05
USP40-207ENST00000450940 GNL2Q13823 731 aaKnown RBP21.58■■□□□ 1.05
USP40-207ENST00000450940 UBXN11Q5T124 520 aa21.58■■□□□ 1.05
USP40-207ENST00000450940 TMX3Q96JJ7 454 aa21.58■■□□□ 1.05
USP40-207ENST00000450940 NACC1Q96RE7 527 aa21.58■■□□□ 1.05
USP40-207ENST00000450940 NFKBIZQ9BYH8 718 aa21.58■■□□□ 1.05
USP40-207ENST00000450940 IGFLR1Q9H665 355 aa21.58■■□□□ 1.05
USP40-207ENST00000450940 SPG21Q9NZD8 308 aa21.58■■□□□ 1.05
USP40-207ENST00000450940 PCDHB2Q9Y5E7 798 aa21.58■■□□□ 1.05
USP40-207ENST00000450940 A0A087WWV3 80 aa21.57■■□□□ 1.04
USP40-207ENST00000450940 LINC01565O15544 149 aa21.57■■□□□ 1.04
USP40-207ENST00000450940 TBX10O75333 385 aa21.57■■□□□ 1.04
USP40-207ENST00000450940 OFD1O75665 1012 aa21.57■■□□□ 1.04
USP40-207ENST00000450940 CD2BP2O95400 341 aaKnown RBP21.57■■□□□ 1.04
USP40-207ENST00000450940 AXLP30530 894 aa21.57■■□□□ 1.04
USP40-207ENST00000450940 FXR2P51116 673 aaKnown RBP eCLIP21.57■■□□□ 1.04
USP40-207ENST00000450940 TFDP1Q14186 410 aa21.57■■□□□ 1.04
USP40-207ENST00000450940 EP400NLQ6ZTU2 488 aa21.57■■□□□ 1.04
USP40-207ENST00000450940 SLC39A11Q8N1S5 342 aa21.57■■□□□ 1.04
USP40-207ENST00000450940 ASAP3Q8TDY4 903 aa21.57■■□□□ 1.04
USP40-207ENST00000450940 LPPQ93052 612 aa21.57■■□□□ 1.04
USP40-207ENST00000450940 PGBD4Q96DM1 585 aa21.57■■□□□ 1.04
USP40-207ENST00000450940 MSLNLQ96KJ4 702 aa21.57■■□□□ 1.04
USP40-207ENST00000450940 TBC1D32Q96NH3 1257 aa21.57■■□□□ 1.04
USP40-207ENST00000450940 CD320Q9NPF0 282 aa21.57■■□□□ 1.04
USP40-207ENST00000450940 PUF60Q9UHX1 559 aaKnown RBP21.57■■□□□ 1.04
USP40-207ENST00000450940 FAM50BQ9Y247 325 aa21.57■■□□□ 1.04
USP40-207ENST00000450940 KIF3AQ9Y496 699 aa21.57■■□□□ 1.04
USP40-207ENST00000450940 PCDHGC5Q9Y5F6 944 aa21.57■■□□□ 1.04
USP40-207ENST00000450940 CARNS1A5YM72 827 aa21.56■■□□□ 1.04
USP40-207ENST00000450940 MEIS3P2A8K0S8 358 aa21.56■■□□□ 1.04
USP40-207ENST00000450940 CSPG5O95196 566 aa21.56■■□□□ 1.04
USP40-207ENST00000450940 GLRA2P23416 452 aa21.56■■□□□ 1.04
USP40-207ENST00000450940 MCM2P49736 904 aa21.56■■□□□ 1.04
USP40-207ENST00000450940 CAPSQ13938 189 aa21.56■■□□□ 1.04
USP40-207ENST00000450940 PDIA5Q14554 519 aa21.56■■□□□ 1.04
USP40-207ENST00000450940 GLB1LQ6UWU2 654 aa21.56■■□□□ 1.04
USP40-207ENST00000450940 AGMOQ6ZNB7 445 aa21.56■■□□□ 1.04
USP40-207ENST00000450940 ERMNQ8TAM6 284 aa21.56■■□□□ 1.04
USP40-207ENST00000450940 MICAL1Q8TDZ2 1067 aa21.56■■□□□ 1.04
USP40-207ENST00000450940 CCDC43Q96MW1 224 aaKnown RBP21.56■■□□□ 1.04
USP40-207ENST00000450940 FSD2A1L4K1 749 aa21.55■■□□□ 1.04
USP40-207ENST00000450940 TSPAN1O60635 241 aa21.55■■□□□ 1.04
USP40-207ENST00000450940 PBX3P40426 434 aa21.55■■□□□ 1.04
USP40-207ENST00000450940 NRIP1P48552 1158 aa21.55■■□□□ 1.04
USP40-207ENST00000450940 BCAR1P56945 870 aa21.55■■□□□ 1.04
USP40-207ENST00000450940 KRT17Q04695 432 aa21.55■■□□□ 1.04
USP40-207ENST00000450940 NBR1Q14596 966 aa21.55■■□□□ 1.04
USP40-207ENST00000450940 AMHR2Q16671 573 aa21.55■■□□□ 1.04
USP40-207ENST00000450940 NOMO2Q5JPE7 1267 aa21.55■■□□□ 1.04
USP40-207ENST00000450940 CCDC51Q96ER9 411 aa21.55■■□□□ 1.04
USP40-207ENST00000450940 CDCA3Q99618 268 aaPredicted RBP21.55■■□□□ 1.04
USP40-207ENST00000450940 TLE6Q9H808 572 aa21.55■■□□□ 1.04
USP40-207ENST00000450940 NGRNQ9NPE2 291 aaKnown RBP21.55■■□□□ 1.04
USP40-207ENST00000450940 TBC1D13Q9NVG8 400 aa21.55■■□□□ 1.04
USP40-207ENST00000450940 CLEC1BQ9P126 229 aa21.55■■□□□ 1.04
USP40-207ENST00000450940 PRKAG3Q9UGI9 489 aa21.55■■□□□ 1.04
USP40-207ENST00000450940 CNTNAP2Q9UHC6 1331 aa21.55■■□□□ 1.04
USP40-207ENST00000450940 ERLIN2O94905 339 aa21.54■■□□□ 1.04
USP40-207ENST00000450940 EYA4O95677 639 aa21.54■■□□□ 1.04
USP40-207ENST00000450940 NCLP19338 710 aaKnown RBP21.54■■□□□ 1.04
USP40-207ENST00000450940 ALDH7A1P49419 539 aaKnown RBP21.54■■□□□ 1.04
USP40-207ENST00000450940 MBTD1Q05BQ5 628 aa21.54■■□□□ 1.04
USP40-207ENST00000450940 DUSP6Q16828 381 aa21.54■■□□□ 1.04
USP40-207ENST00000450940 IGSF22Q8N9C0 903 aa21.54■■□□□ 1.04
USP40-207ENST00000450940 CNNM3Q8NE01 707 aa21.54■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms