RNA–Protein interactions for RNA: ENST00000436638.5

ECHDC1-208, Transcript of ethylmalonyl-CoA decarboxylase 1, human

APPRIS ALT2 TSL 3

Gene ECHDC1, Length 766 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ECHDC1-208	ENST00000436638	MXRA8	Q9BRK3	442 aa		6.93	□□□□□ -1.3
ECHDC1-208	ENST00000436638	MCOLN1	Q9GZU1	580 aa		6.93	□□□□□ -1.3
ECHDC1-208	ENST00000436638	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	6.93	□□□□□ -1.3
ECHDC1-208	ENST00000436638	SUDS3	Q9H7L9	328 aa	Predicted RBP	6.93	□□□□□ -1.3
ECHDC1-208	ENST00000436638	SPC25	Q9HBM1	224 aa		6.93	□□□□□ -1.3
ECHDC1-208	ENST00000436638	FLRT1	Q9NZU1	646 aa		6.93	□□□□□ -1.3
ECHDC1-208	ENST00000436638	PUF60	Q9UHX1	559 aa	Known RBP	6.93	□□□□□ -1.3
ECHDC1-208	ENST00000436638	STARD13	Q9Y3M8	1113 aa		6.93	□□□□□ -1.3
ECHDC1-208	ENST00000436638	KCNMB2	Q9Y691	235 aa		6.93	□□□□□ -1.3
ECHDC1-208	ENST00000436638	FRMPD4	Q14CM0	1322 aa		6.93	□□□□□ -1.3
ECHDC1-208	ENST00000436638	RPTOR	Q8N122	1335 aa		6.93	□□□□□ -1.3
ECHDC1-208	ENST00000436638	TLDC2	A0PJX2	215 aa		6.92	□□□□□ -1.3
ECHDC1-208	ENST00000436638	GOLGA6L3	A6NEY3	463 aa		6.92	□□□□□ -1.3
ECHDC1-208	ENST00000436638	NKRF	O15226	690 aa	Known RBP eCLIP	6.92	□□□□□ -1.3
ECHDC1-208	ENST00000436638	SEPT4	O43236	478 aa		6.92	□□□□□ -1.3
ECHDC1-208	ENST00000436638	FIBP	O43427	364 aa		6.92	□□□□□ -1.3
ECHDC1-208	ENST00000436638	CCNT1	O60563	726 aa	Known RBP	6.92	□□□□□ -1.3
ECHDC1-208	ENST00000436638	MAP3K6	O95382	1288 aa		6.92	□□□□□ -1.3
ECHDC1-208	ENST00000436638	BAG4	O95429	457 aa	Known RBP	6.92	□□□□□ -1.3
ECHDC1-208	ENST00000436638	ALB	P02768	609 aa		6.92	□□□□□ -1.3
ECHDC1-208	ENST00000436638	CYP3A4	P08684	503 aa		6.92	□□□□□ -1.3
ECHDC1-208	ENST00000436638	TXN	P10599	105 aa	Known RBP	6.92	□□□□□ -1.3
ECHDC1-208	ENST00000436638	RARB	P10826	455 aa		6.92	□□□□□ -1.3
ECHDC1-208	ENST00000436638	TRAPPC10	P48553	1259 aa		6.92	□□□□□ -1.3
ECHDC1-208	ENST00000436638	NUCB2	P80303	420 aa		6.92	□□□□□ -1.3
ECHDC1-208	ENST00000436638	MLLT1	Q03111	559 aa	Predicted RBP	6.92	□□□□□ -1.3
ECHDC1-208	ENST00000436638	TNFAIP2	Q03169	654 aa		6.92	□□□□□ -1.3
ECHDC1-208	ENST00000436638	MTMR1	Q13613	665 aa		6.92	□□□□□ -1.3
ECHDC1-208	ENST00000436638	NPY5R	Q15761	445 aa		6.92	□□□□□ -1.3
ECHDC1-208	ENST00000436638	PRR16	Q569H4	304 aa		6.92	□□□□□ -1.3
ECHDC1-208	ENST00000436638	BRDT	Q58F21	947 aa	Predicted RBP	6.92	□□□□□ -1.3
ECHDC1-208	ENST00000436638	RILPL1	Q5EBL4	403 aa		6.92	□□□□□ -1.3
ECHDC1-208	ENST00000436638	IQSEC1	Q6DN90	963 aa		6.92	□□□□□ -1.3
ECHDC1-208	ENST00000436638	C8orf86	Q6ZUL3	223 aa		6.92	□□□□□ -1.3
ECHDC1-208	ENST00000436638	NIPA1	Q7RTP0	329 aa		6.92	□□□□□ -1.3
ECHDC1-208	ENST00000436638	BRAP	Q7Z569	592 aa		6.92	□□□□□ -1.3
ECHDC1-208	ENST00000436638	PCGF5	Q86SE9	256 aa		6.92	□□□□□ -1.3
ECHDC1-208	ENST00000436638	NOSTRIN	Q8IVI9	506 aa		6.92	□□□□□ -1.3
ECHDC1-208	ENST00000436638	MICALL1	Q8N3F8	863 aa		6.92	□□□□□ -1.3
ECHDC1-208	ENST00000436638	IL31RA	Q8NI17	732 aa		6.92	□□□□□ -1.3
ECHDC1-208	ENST00000436638	HELQ	Q8TDG4	1101 aa		6.92	□□□□□ -1.3
ECHDC1-208	ENST00000436638	SCFD2	Q8WU76	684 aa		6.92	□□□□□ -1.3
ECHDC1-208	ENST00000436638	NUDT8	Q8WV74	236 aa		6.92	□□□□□ -1.3
ECHDC1-208	ENST00000436638	GPRASP2	Q96D09	838 aa		6.92	□□□□□ -1.3
ECHDC1-208	ENST00000436638	IPO9	Q96P70	1041 aa	Known RBP	6.92	□□□□□ -1.3
ECHDC1-208	ENST00000436638	MAP7D2	Q96T17	732 aa		6.92	□□□□□ -1.3
ECHDC1-208	ENST00000436638	SDF4	Q9BRK5	362 aa		6.92	□□□□□ -1.3
ECHDC1-208	ENST00000436638	WDR11	Q9BZH6	1224 aa		6.92	□□□□□ -1.3
ECHDC1-208	ENST00000436638	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	6.92	□□□□□ -1.3
ECHDC1-208	ENST00000436638	AP5M1	Q9H0R1	490 aa		6.92	□□□□□ -1.3
ECHDC1-208	ENST00000436638	RNF208	Q9H0X6	261 aa		6.92	□□□□□ -1.3
ECHDC1-208	ENST00000436638	MLXIP	Q9HAP2	919 aa		6.92	□□□□□ -1.3
ECHDC1-208	ENST00000436638	DDX25	Q9UHL0	483 aa	Known RBP	6.92	□□□□□ -1.3
ECHDC1-208	ENST00000436638	UBIAD1	Q9Y5Z9	338 aa		6.92	□□□□□ -1.3
ECHDC1-208	ENST00000436638	SMCHD1	A6NHR9	2005 aa		6.92	□□□□□ -1.3
ECHDC1-208	ENST00000436638	ZNFX1	Q9P2E3	1918 aa	Known RBP	6.91	□□□□□ -1.3
ECHDC1-208	ENST00000436638	KIF28P	B7ZC32	967 aa		6.91	□□□□□ -1.3
ECHDC1-208	ENST00000436638	PPP1R12A	O14974	1030 aa	Predicted RBP	6.91	□□□□□ -1.3
ECHDC1-208	ENST00000436638	ADAMTS3	O15072	1205 aa		6.91	□□□□□ -1.3
ECHDC1-208	ENST00000436638	ZEB2	O60315	1214 aa		6.91	□□□□□ -1.3
ECHDC1-208	ENST00000436638	KIF20A	O95235	890 aa		6.91	□□□□□ -1.3
ECHDC1-208	ENST00000436638	GH1	P01241	217 aa		6.91	□□□□□ -1.3
ECHDC1-208	ENST00000436638	ZNF865	P0CJ78	1059 aa	Predicted RBP	6.91	□□□□□ -1.3
ECHDC1-208	ENST00000436638	ZSCAN22	P10073	491 aa	Predicted RBP	6.91	□□□□□ -1.3
ECHDC1-208	ENST00000436638	TGFB3	P10600	412 aa		6.91	□□□□□ -1.3
ECHDC1-208	ENST00000436638	NEFH	P12036	1026 aa		6.91	□□□□□ -1.3
ECHDC1-208	ENST00000436638	CYBA	P13498	195 aa		6.91	□□□□□ -1.3
ECHDC1-208	ENST00000436638	CCL5	P13501	91 aa		6.91	□□□□□ -1.3
ECHDC1-208	ENST00000436638	CPB1	P15086	417 aa		6.91	□□□□□ -1.3
ECHDC1-208	ENST00000436638	ZNF16	P17020	682 aa	Predicted RBP	6.91	□□□□□ -1.3
ECHDC1-208	ENST00000436638	U2AF2	P26368	475 aa	Known RBP eCLIP	6.91	□□□□□ -1.3	8e-7	■■■■□ 25.7
ECHDC1-208	ENST00000436638	CCND3	P30281	292 aa	Predicted RBP	6.91	□□□□□ -1.3
ECHDC1-208	ENST00000436638	ICAM3	P32942	547 aa		6.91	□□□□□ -1.3
ECHDC1-208	ENST00000436638	CIITA	P33076	1130 aa		6.91	□□□□□ -1.3
ECHDC1-208	ENST00000436638	FLT3	P36888	993 aa		6.91	□□□□□ -1.3
ECHDC1-208	ENST00000436638	ADCYAP1R1	P41586	468 aa		6.91	□□□□□ -1.3
ECHDC1-208	ENST00000436638	MRPS9	P82933	396 aa	Known RBP	6.91	□□□□□ -1.3
ECHDC1-208	ENST00000436638	ORC2	Q13416	577 aa	Predicted RBP	6.91	□□□□□ -1.3
ECHDC1-208	ENST00000436638	MTMR3	Q13615	1198 aa		6.91	□□□□□ -1.3
ECHDC1-208	ENST00000436638	NEDD9	Q14511	834 aa		6.91	□□□□□ -1.3
ECHDC1-208	ENST00000436638	PCSK7	Q16549	785 aa		6.91	□□□□□ -1.3
ECHDC1-208	ENST00000436638	CCDC144B	Q3MJ40	725 aa		6.91	□□□□□ -1.3
ECHDC1-208	ENST00000436638	CEP55	Q53EZ4	464 aa		6.91	□□□□□ -1.3
ECHDC1-208	ENST00000436638	TTC38	Q5R3I4	469 aa		6.91	□□□□□ -1.3
ECHDC1-208	ENST00000436638	MOXD1	Q6UVY6	613 aa		6.91	□□□□□ -1.3
ECHDC1-208	ENST00000436638	FERMT3	Q86UX7	667 aa		6.91	□□□□□ -1.3
ECHDC1-208	ENST00000436638	FAM35A	Q86V20	835 aa		6.91	□□□□□ -1.3
ECHDC1-208	ENST00000436638	ATCAY	Q86WG3	371 aa		6.91	□□□□□ -1.3
ECHDC1-208	ENST00000436638	GIMAP8	Q8ND71	665 aa	Predicted RBP	6.91	□□□□□ -1.3
ECHDC1-208	ENST00000436638	OR6J1	Q8NGC5	347 aa		6.91	□□□□□ -1.3
ECHDC1-208	ENST00000436638	ZNF396	Q96N95	335 aa	Predicted RBP	6.91	□□□□□ -1.3
ECHDC1-208	ENST00000436638	RPS6KC1	Q96S38	1066 aa		6.91	□□□□□ -1.3
ECHDC1-208	ENST00000436638	ZNF577	Q9BSK1	485 aa		6.91	□□□□□ -1.3
ECHDC1-208	ENST00000436638	PLVAP	Q9BX97	442 aa		6.91	□□□□□ -1.3
ECHDC1-208	ENST00000436638	INO80B	Q9C086	356 aa	Predicted RBP	6.91	□□□□□ -1.3
ECHDC1-208	ENST00000436638	PDGFC	Q9NRA1	345 aa		6.91	□□□□□ -1.3
ECHDC1-208	ENST00000436638	NOP53	Q9NZM5	478 aa	Known RBP	6.91	□□□□□ -1.3
ECHDC1-208	ENST00000436638	DDX20	Q9UHI6	824 aa	Known RBP	6.91	□□□□□ -1.3
ECHDC1-208	ENST00000436638	CEP131	Q9UPN4	1083 aa		6.91	□□□□□ -1.3
ECHDC1-208	ENST00000436638	MTMR6	Q9Y217	621 aa		6.91	□□□□□ -1.3

Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms