RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 EXOC3O60645 756 aa19.89■□□□□ 0.77
CCDC88C-203ENST00000389856 GYPCP04921 128 aa19.89■□□□□ 0.77
CCDC88C-203ENST00000389856 CASQ1P31415 396 aa19.89■□□□□ 0.77
CCDC88C-203ENST00000389856 ARL2P36404 184 aa19.89■□□□□ 0.77
CCDC88C-203ENST00000389856 KCNA1Q09470 495 aa19.89■□□□□ 0.77
CCDC88C-203ENST00000389856 MXD4Q14582 209 aaPredicted RBP19.89■□□□□ 0.77
CCDC88C-203ENST00000389856 KIF22Q14807 665 aa19.89■□□□□ 0.77
CCDC88C-203ENST00000389856 CYP26C1Q6V0L0 522 aa19.89■□□□□ 0.77
CCDC88C-203ENST00000389856 DMAC2Q9NW81 257 aa19.89■□□□□ 0.77
CCDC88C-203ENST00000389856 LUC7L2Q9Y383 392 aaKnown RBP19.89■□□□□ 0.77
CCDC88C-203ENST00000389856 CLIC2O15247 247 aa19.88■□□□□ 0.77
CCDC88C-203ENST00000389856 MAPK13O15264 365 aa19.88■□□□□ 0.77
CCDC88C-203ENST00000389856 LGALS2P05162 132 aa19.88■□□□□ 0.77
CCDC88C-203ENST00000389856 KRT13P13646 458 aa19.88■□□□□ 0.77
CCDC88C-203ENST00000389856 SMPD1P17405 629 aa19.88■□□□□ 0.77
CCDC88C-203ENST00000389856 MARK3P27448 753 aa19.88■□□□□ 0.77
CCDC88C-203ENST00000389856 CASP14P31944 242 aa19.88■□□□□ 0.77
CCDC88C-203ENST00000389856 DGKDQ16760 1214 aa19.88■□□□□ 0.77
CCDC88C-203ENST00000389856 TOGARAM2Q6ZUX3 1019 aa19.88■□□□□ 0.77
CCDC88C-203ENST00000389856 AFG1LQ8WV93 481 aa19.88■□□□□ 0.77
CCDC88C-203ENST00000389856 CAPNS2Q96L46 248 aa19.88■□□□□ 0.77
CCDC88C-203ENST00000389856 EDEM3Q9BZQ6 932 aa19.88■□□□□ 0.77
CCDC88C-203ENST00000389856 ADGRG1Q9Y653 693 aa19.88■□□□□ 0.77
CCDC88C-203ENST00000389856 A0A1W2PQJ5 194 aa19.87■□□□□ 0.77
CCDC88C-203ENST00000389856 MAGEB2O15479 319 aa19.87■□□□□ 0.77
CCDC88C-203ENST00000389856 AFPP02771 609 aaKnown RBP19.87■□□□□ 0.77
CCDC88C-203ENST00000389856 CYP2B6P20813 491 aa19.87■□□□□ 0.77
CCDC88C-203ENST00000389856 EFNA5P52803 228 aa19.87■□□□□ 0.77
CCDC88C-203ENST00000389856 USP37Q86T82 979 aa19.87■□□□□ 0.77
CCDC88C-203ENST00000389856 XXYLT1Q8NBI6 393 aa19.87■□□□□ 0.77
CCDC88C-203ENST00000389856 PSPC1Q8WXF1 523 aaKnown RBP19.87■□□□□ 0.77
CCDC88C-203ENST00000389856 CEP89Q96ST8 783 aa19.87■□□□□ 0.77
CCDC88C-203ENST00000389856 ARHGAP28Q9P2N2 729 aa19.87■□□□□ 0.77
CCDC88C-203ENST00000389856 CAPN11Q9UMQ6 739 aa19.87■□□□□ 0.77
CCDC88C-203ENST00000389856 Q9Y3F1 56 aa19.87■□□□□ 0.77
CCDC88C-203ENST00000389856 KIAA0391O15091 583 aaKnown RBP19.87■□□□□ 0.77
CCDC88C-203ENST00000389856 ASAP2O43150 1006 aa19.87■□□□□ 0.77
CCDC88C-203ENST00000389856 AKAP3O75969 853 aa19.87■□□□□ 0.77
CCDC88C-203ENST00000389856 HOXD8P13378 290 aaPredicted RBP19.87■□□□□ 0.77
CCDC88C-203ENST00000389856 CYP2J2P51589 502 aa19.87■□□□□ 0.77
CCDC88C-203ENST00000389856 GNG11P61952 73 aa19.87■□□□□ 0.77
CCDC88C-203ENST00000389856 TFDP1Q14186 410 aa19.87■□□□□ 0.77
CCDC88C-203ENST00000389856 INTS8Q75QN2 995 aaKnown RBP19.87■□□□□ 0.77
CCDC88C-203ENST00000389856 TRIM50Q86XT4 487 aa19.87■□□□□ 0.77
CCDC88C-203ENST00000389856 KSR1Q8IVT5 923 aa19.87■□□□□ 0.77
CCDC88C-203ENST00000389856 CPLX3Q8WVH0 158 aa19.87■□□□□ 0.77
CCDC88C-203ENST00000389856 TMEM143Q96AN5 459 aa19.87■□□□□ 0.77
CCDC88C-203ENST00000389856 BICD1Q96G01 975 aa19.87■□□□□ 0.77
CCDC88C-203ENST00000389856 C2orf40Q9H1Z8 148 aa19.87■□□□□ 0.77
CCDC88C-203ENST00000389856 ABHD10Q9NUJ1 306 aa19.87■□□□□ 0.77
CCDC88C-203ENST00000389856 ZNHIT6Q9NWK9 470 aaKnown RBP19.87■□□□□ 0.77
CCDC88C-203ENST00000389856 MYO1AQ9UBC5 1043 aa19.87■□□□□ 0.77
CCDC88C-203ENST00000389856 GJD2Q9UKL4 321 aa19.87■□□□□ 0.77
CCDC88C-203ENST00000389856 LRRIQ4A6NIV6 560 aa19.86■□□□□ 0.77
CCDC88C-203ENST00000389856 MMP3P08254 477 aa19.86■□□□□ 0.77
CCDC88C-203ENST00000389856 APLP1P51693 650 aa19.86■□□□□ 0.77
CCDC88C-203ENST00000389856 TUBB4BP68371 445 aa19.86■□□□□ 0.77
CCDC88C-203ENST00000389856 PTPN21Q16825 1174 aa19.86■□□□□ 0.77
CCDC88C-203ENST00000389856 ZBTB8OSQ8IWT0 167 aa19.86■□□□□ 0.77
CCDC88C-203ENST00000389856 NEK11Q8NG66 645 aa19.86■□□□□ 0.77
CCDC88C-203ENST00000389856 BSNDQ8WZ55 320 aa19.86■□□□□ 0.77
CCDC88C-203ENST00000389856 AP5M1Q9H0R1 490 aa19.86■□□□□ 0.77
CCDC88C-203ENST00000389856 TMEM134Q9H6X4 195 aa19.86■□□□□ 0.77
CCDC88C-203ENST00000389856 IGKV6-21A0A0C4DH24 114 aa19.85■□□□□ 0.77
CCDC88C-203ENST00000389856 KIF5CO60282 957 aa19.85■□□□□ 0.77
CCDC88C-203ENST00000389856 GLRA2P23416 452 aa19.85■□□□□ 0.77
CCDC88C-203ENST00000389856 KRT9P35527 623 aa19.85■□□□□ 0.77
CCDC88C-203ENST00000389856 FXR1P51114 621 aaKnown RBP eCLIP19.85■□□□□ 0.77
CCDC88C-203ENST00000389856 ZBED6P86452 979 aa19.85■□□□□ 0.77
CCDC88C-203ENST00000389856 KCNH2Q12809 1159 aa19.85■□□□□ 0.77
CCDC88C-203ENST00000389856 DCAF17Q5H9S7 520 aaPredicted RBP19.85■□□□□ 0.77
CCDC88C-203ENST00000389856 TCERG1LQ5VWI1 586 aa19.85■□□□□ 0.77
CCDC88C-203ENST00000389856 MFSD14CQ5VZR4 134 aa19.85■□□□□ 0.77
CCDC88C-203ENST00000389856 MNS1Q8NEH6 495 aa19.85■□□□□ 0.77
CCDC88C-203ENST00000389856 OR8K1Q8NGG5 319 aa19.85■□□□□ 0.77
CCDC88C-203ENST00000389856 NUCKS1Q9H1E3 243 aaKnown RBP19.85■□□□□ 0.77
CCDC88C-203ENST00000389856 C11orf97A0A1B0GVM6 126 aaPredicted RBP19.84■□□□□ 0.77
CCDC88C-203ENST00000389856 GTPBP10A4D1E9 387 aaKnown RBP19.84■□□□□ 0.77
CCDC88C-203ENST00000389856 EFCAB8A8MWE9 144 aa19.84■□□□□ 0.77
CCDC88C-203ENST00000389856 K7ERI5 159 aa19.84■□□□□ 0.77
CCDC88C-203ENST00000389856 HNRNPDLO14979 420 aaKnown RBP19.84■□□□□ 0.77
CCDC88C-203ENST00000389856 N4BP1O75113 896 aaKnown RBP19.84■□□□□ 0.77
CCDC88C-203ENST00000389856 GARTP22102 1010 aa19.84■□□□□ 0.77
CCDC88C-203ENST00000389856 TMOD1P28289 359 aa19.84■□□□□ 0.77
CCDC88C-203ENST00000389856 PSMC4P43686 418 aa19.84■□□□□ 0.77
CCDC88C-203ENST00000389856 CPT1AP50416 773 aa19.84■□□□□ 0.77
CCDC88C-203ENST00000389856 LACTBP83111 547 aaPredicted RBP19.84■□□□□ 0.77
CCDC88C-203ENST00000389856 CETN1Q12798 172 aa19.84■□□□□ 0.77
CCDC88C-203ENST00000389856 SLFN12LQ6IEE8 588 aa19.84■□□□□ 0.77
CCDC88C-203ENST00000389856 RAD9BQ6WBX8 426 aa19.84■□□□□ 0.77
CCDC88C-203ENST00000389856 MMRN2Q9H8L6 949 aa19.84■□□□□ 0.77
CCDC88C-203ENST00000389856 KIAA1586Q9HCI6 787 aa19.84■□□□□ 0.77
CCDC88C-203ENST00000389856 HSPBP1Q9NZL4 362 aa19.84■□□□□ 0.77
CCDC88C-203ENST00000389856 SOWAHDA6NJG2 315 aa19.84■□□□□ 0.77
CCDC88C-203ENST00000389856 H3BRB1 525 aa19.84■□□□□ 0.77
CCDC88C-203ENST00000389856 ADCY3O60266 1144 aa19.84■□□□□ 0.77
CCDC88C-203ENST00000389856 URI1O94763 535 aaPredicted RBP19.84■□□□□ 0.77
CCDC88C-203ENST00000389856 ZNF865P0CJ78 1059 aaPredicted RBP19.84■□□□□ 0.77
CCDC88C-203ENST00000389856 CNGA1P29973 690 aa19.84■□□□□ 0.77
CCDC88C-203ENST00000389856 LIG4P49917 911 aa19.84■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms