RNA–Protein interactions for RNA: ENST00000284637.13

SH3RF1-201, Transcript of SH3 domain containing ring finger 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SH3RF1, Length 5,272 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-201ENST00000284637 UPF3AQ9H1J1 476 aaKnown RBP17.54■□□□□ 0.4
SH3RF1-201ENST00000284637 HEY1Q9Y5J3 304 aa17.54■□□□□ 0.4
SH3RF1-201ENST00000284637 USP17L10C9JJH3 530 aa17.54■□□□□ 0.4
SH3RF1-201ENST00000284637 GSTA4O15217 222 aa17.54■□□□□ 0.4
SH3RF1-201ENST00000284637 KRT38O76015 456 aa17.54■□□□□ 0.4
SH3RF1-201ENST00000284637 PSAPP07602 524 aa17.54■□□□□ 0.4
SH3RF1-201ENST00000284637 FGFR4P22455 802 aa17.54■□□□□ 0.4
SH3RF1-201ENST00000284637 STAT3P40763 770 aa17.54■□□□□ 0.4
SH3RF1-201ENST00000284637 RCAN1P53805 252 aa17.54■□□□□ 0.4
SH3RF1-201ENST00000284637 PTGISQ16647 500 aa17.54■□□□□ 0.4
SH3RF1-201ENST00000284637 PADI6Q6TGC4 694 aa17.54■□□□□ 0.4
SH3RF1-201ENST00000284637 RFX8Q6ZV50 586 aa17.54■□□□□ 0.4
SH3RF1-201ENST00000284637 FAM161BQ96MY7 647 aa17.54■□□□□ 0.4
SH3RF1-201ENST00000284637 CFAP69A5D8W1 941 aa17.54■□□□□ 0.4
SH3RF1-201ENST00000284637 H3BQF6 201 aa17.54■□□□□ 0.4
SH3RF1-201ENST00000284637 INPP1P49441 399 aa17.54■□□□□ 0.4
SH3RF1-201ENST00000284637 ARFIP2P53365 341 aa17.54■□□□□ 0.4
SH3RF1-201ENST00000284637 MKRN3Q13064 507 aaKnown RBP17.54■□□□□ 0.4
SH3RF1-201ENST00000284637 NKX1-1Q15270 411 aaPredicted RBP17.54■□□□□ 0.4
SH3RF1-201ENST00000284637 Q3C1V9 767 aa17.54■□□□□ 0.4
SH3RF1-201ENST00000284637 LONP2Q86WA8 852 aa17.54■□□□□ 0.4
SH3RF1-201ENST00000284637 PPM1NQ8N819 430 aa17.54■□□□□ 0.4
SH3RF1-201ENST00000284637 TC2NQ8N9U0 490 aa17.54■□□□□ 0.4
SH3RF1-201ENST00000284637 CEP95Q96GE4 821 aa17.54■□□□□ 0.4
SH3RF1-201ENST00000284637 SEC24CP53992 1094 aa17.54■□□□□ 0.4
SH3RF1-201ENST00000284637 CAV1Q03135 178 aa17.54■□□□□ 0.4
SH3RF1-201ENST00000284637 AGPAT5Q9NUQ2 364 aa17.54■□□□□ 0.4
SH3RF1-201ENST00000284637 NDE1Q9NXR1 346 aa17.54■□□□□ 0.4
SH3RF1-201ENST00000284637 MID2Q9UJV3 735 aa17.54■□□□□ 0.4
SH3RF1-201ENST00000284637 ARL2BPQ9Y2Y0 163 aa17.54■□□□□ 0.4
SH3RF1-201ENST00000284637 RFX7Q2KHR2 1363 aa17.53■□□□□ 0.4
SH3RF1-201ENST00000284637 SLC16A4O15374 487 aa17.53■□□□□ 0.4
SH3RF1-201ENST00000284637 AP2B1P63010 937 aa17.53■□□□□ 0.4
SH3RF1-201ENST00000284637 NOP14P78316 857 aaKnown RBP17.53■□□□□ 0.4
SH3RF1-201ENST00000284637 ALX1Q15699 326 aa17.53■□□□□ 0.4
SH3RF1-201ENST00000284637 EXT2Q93063 718 aa17.53■□□□□ 0.4
SH3RF1-201ENST00000284637 BARHL2Q9NY43 387 aa17.53■□□□□ 0.4
SH3RF1-201ENST00000284637 SMARCAL1Q9NZC9 954 aa17.53■□□□□ 0.4
SH3RF1-201ENST00000284637 CEP170Q5SW79 1584 aa17.53■□□□□ 0.4
SH3RF1-201ENST00000284637 PLEKHG2Q9H7P9 1386 aa17.53■□□□□ 0.4
SH3RF1-201ENST00000284637 FAM187AA6NFU0 413 aa17.53■□□□□ 0.4
SH3RF1-201ENST00000284637 GH2P01242 217 aa17.53■□□□□ 0.4
SH3RF1-201ENST00000284637 ZFXP17010 805 aaPredicted RBP17.53■□□□□ 0.4
SH3RF1-201ENST00000284637 CTCFP49711 727 aaPredicted RBP17.53■□□□□ 0.4
SH3RF1-201ENST00000284637 GPS1Q13098 491 aa17.53■□□□□ 0.4
SH3RF1-201ENST00000284637 BYSLQ13895 437 aaKnown RBP17.53■□□□□ 0.4
SH3RF1-201ENST00000284637 RGS9BPQ6ZS82 235 aa17.53■□□□□ 0.4
SH3RF1-201ENST00000284637 ZBED8Q8IZ13 594 aa17.53■□□□□ 0.4
SH3RF1-201ENST00000284637 TMEM35BQ8NCS4 154 aa17.53■□□□□ 0.4
SH3RF1-201ENST00000284637 PRPF31Q8WWY3 499 aaKnown RBP17.53■□□□□ 0.4
SH3RF1-201ENST00000284637 NLRP4Q96MN2 994 aa17.53■□□□□ 0.4
SH3RF1-201ENST00000284637 INTS2Q9H0H0 1204 aaKnown RBP17.53■□□□□ 0.4
SH3RF1-201ENST00000284637 EEF1DP29692 281 aaKnown RBP17.53■□□□□ 0.4
SH3RF1-201ENST00000284637 ERFP50548 548 aa17.53■□□□□ 0.4
SH3RF1-201ENST00000284637 LAMB3Q13751 1172 aa17.53■□□□□ 0.4
SH3RF1-201ENST00000284637 NCAPHQ15003 741 aa17.53■□□□□ 0.4
SH3RF1-201ENST00000284637 LRIG3Q6UXM1 1119 aa17.53■□□□□ 0.4
SH3RF1-201ENST00000284637 SULF1Q8IWU6 871 aa17.53■□□□□ 0.4
SH3RF1-201ENST00000284637 NLGN1Q8N2Q7 840 aa17.53■□□□□ 0.4
SH3RF1-201ENST00000284637 MOV10L1Q9BXT6 1211 aaKnown RBP17.53■□□□□ 0.4
SH3RF1-201ENST00000284637 VCPKMTQ9H867 229 aa17.53■□□□□ 0.4
SH3RF1-201ENST00000284637 SPC25Q9HBM1 224 aa17.53■□□□□ 0.4
SH3RF1-201ENST00000284637 CCT8L1PA6NM43 557 aa17.53■□□□□ 0.4
SH3RF1-201ENST00000284637 C16orf87Q6PH81 154 aa17.53■□□□□ 0.4
SH3RF1-201ENST00000284637 NOA1Q8NC60 698 aaKnown RBP17.53■□□□□ 0.4
SH3RF1-201ENST00000284637 RNPC3Q96LT9 517 aaKnown RBP17.53■□□□□ 0.4
SH3RF1-201ENST00000284637 VPS11Q9H270 941 aa17.53■□□□□ 0.4
SH3RF1-201ENST00000284637 EFCAB6Q5THR3 1501 aa17.52■□□□□ 0.4
SH3RF1-201ENST00000284637 GOLGA8CPA6NN73 597 aa17.52■□□□□ 0.4
SH3RF1-201ENST00000284637 PDIA2Q13087 525 aaKnown RBP17.52■□□□□ 0.4
SH3RF1-201ENST00000284637 EAPPQ56P03 285 aaPredicted RBP17.52■□□□□ 0.4
SH3RF1-201ENST00000284637 WDR93Q6P2C0 686 aa17.52■□□□□ 0.4
SH3RF1-201ENST00000284637 USP49Q70CQ1 688 aa17.52■□□□□ 0.4
SH3RF1-201ENST00000284637 SIX6OS1Q8N1H7 587 aa17.52■□□□□ 0.4
SH3RF1-201ENST00000284637 DNAJC9Q8WXX5 260 aa17.52■□□□□ 0.4
SH3RF1-201ENST00000284637 TTC25Q96NG3 672 aa17.52■□□□□ 0.4
SH3RF1-201ENST00000284637 FAM193BQ96PV7 902 aaPredicted RBP17.52■□□□□ 0.4
SH3RF1-201ENST00000284637 ADD3Q9UEY8 706 aaKnown RBP17.52■□□□□ 0.4
SH3RF1-201ENST00000284637 PCSK1NQ9UHG2 260 aa17.52■□□□□ 0.4
SH3RF1-201ENST00000284637 FAM196BA6NMK8 535 aa17.52■□□□□ 0.4
SH3RF1-201ENST00000284637 FAM213AQ9BRX8 229 aa17.52■□□□□ 0.4
SH3RF1-201ENST00000284637 LCMT1Q9UIC8 334 aa17.52■□□□□ 0.4
SH3RF1-201ENST00000284637 NVLO15381 856 aaKnown RBP17.52■□□□□ 0.4
SH3RF1-201ENST00000284637 KCNA3P22001 575 aa17.52■□□□□ 0.4
SH3RF1-201ENST00000284637 MARK3P27448 753 aa17.52■□□□□ 0.4
SH3RF1-201ENST00000284637 GRM4Q14833 912 aa17.52■□□□□ 0.4
SH3RF1-201ENST00000284637 BBS5Q8N3I7 341 aa17.52■□□□□ 0.4
SH3RF1-201ENST00000284637 RFFLQ8WZ73 363 aa17.52■□□□□ 0.4
SH3RF1-201ENST00000284637 RPF1Q9H9Y2 349 aaKnown RBP17.52■□□□□ 0.4
SH3RF1-201ENST00000284637 ATP6V0A4Q9HBG4 840 aa17.52■□□□□ 0.4
SH3RF1-201ENST00000284637 SLC5A4Q9NY91 659 aa17.52■□□□□ 0.4
SH3RF1-201ENST00000284637 NR1I3Q14994 352 aa17.52■□□□□ 0.39
SH3RF1-201ENST00000284637 KLHL38Q2WGJ6 581 aa17.52■□□□□ 0.39
SH3RF1-201ENST00000284637 ACBD5Q5T8D3 534 aaPredicted RBP17.52■□□□□ 0.39
SH3RF1-201ENST00000284637 TRPM8Q7Z2W7 1104 aa17.52■□□□□ 0.39
SH3RF1-201ENST00000284637 AGGF1Q8N302 714 aaeCLIP17.52■□□□□ 0.39
SH3RF1-201ENST00000284637 MTA3Q9BTC8 594 aa17.52■□□□□ 0.39
SH3RF1-201ENST00000284637 ADAM33Q9BZ11 813 aa17.52■□□□□ 0.39
SH3RF1-201ENST00000284637 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.52■□□□□ 0.39
SH3RF1-201ENST00000284637 TMEM94Q12767 1356 aa17.52■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms