RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 ENPP3O14638 875 aa14.41□□□□□ -0.1
CLK3-224ENST00000568605 SRGAP2CP0DJJ0 459 aa14.41□□□□□ -0.1
CLK3-224ENST00000568605 CYP11B2P19099 503 aa14.41□□□□□ -0.1
CLK3-224ENST00000568605 SARSP49591 514 aaKnown RBP14.41□□□□□ -0.1
CLK3-224ENST00000568605 HTRA4P83105 476 aaPredicted RBP14.41□□□□□ -0.1
CLK3-224ENST00000568605 CEBPZQ03701 1054 aaKnown RBP14.41□□□□□ -0.1
CLK3-224ENST00000568605 FAM102BQ5T8I3 360 aa14.41□□□□□ -0.1
CLK3-224ENST00000568605 ATL3Q6DD88 541 aa14.41□□□□□ -0.1
CLK3-224ENST00000568605 FAM173BQ6P4H8 233 aa14.41□□□□□ -0.1
CLK3-224ENST00000568605 SLC24A5Q71RS6 500 aa14.41□□□□□ -0.1
CLK3-224ENST00000568605 TMCO2Q7Z6W1 182 aaPredicted RBP14.41□□□□□ -0.1
CLK3-224ENST00000568605 KSR1Q8IVT5 923 aa14.41□□□□□ -0.1
CLK3-224ENST00000568605 ZBTB8OSQ8IWT0 167 aa14.41□□□□□ -0.1
CLK3-224ENST00000568605 LINC01599Q8WXQ3 324 aa14.41□□□□□ -0.1
CLK3-224ENST00000568605 KIFAP3Q92845 792 aa14.41□□□□□ -0.1
CLK3-224ENST00000568605 FAM161BQ96MY7 647 aa14.41□□□□□ -0.1
CLK3-224ENST00000568605 USP28Q96RU2 1077 aa14.41□□□□□ -0.1
CLK3-224ENST00000568605 GAS2L1Q99501 681 aaPredicted RBP14.41□□□□□ -0.1
CLK3-224ENST00000568605 TIPINQ9BVW5 301 aa14.41□□□□□ -0.1
CLK3-224ENST00000568605 NFKBIZQ9BYH8 718 aa14.41□□□□□ -0.1
CLK3-224ENST00000568605 TTYH1Q9H313 450 aaPredicted RBP14.41□□□□□ -0.1
CLK3-224ENST00000568605 TMX1Q9H3N1 280 aa14.41□□□□□ -0.1
CLK3-224ENST00000568605 SEMA6BQ9H3T3 888 aa14.41□□□□□ -0.1
CLK3-224ENST00000568605 CHST12Q9NRB3 414 aa14.41□□□□□ -0.1
CLK3-224ENST00000568605 RGS18Q9NS28 235 aa14.41□□□□□ -0.1
CLK3-224ENST00000568605 KCND2Q9NZV8 630 aa14.41□□□□□ -0.1
CLK3-224ENST00000568605 CCDC39Q9UFE4 941 aa14.41□□□□□ -0.1
CLK3-224ENST00000568605 LRRIQ4A6NIV6 560 aa14.4□□□□□ -0.1
CLK3-224ENST00000568605 HOXA2O43364 376 aa14.4□□□□□ -0.1
CLK3-224ENST00000568605 YEATS4O95619 227 aa14.4□□□□□ -0.1
CLK3-224ENST00000568605 MYOGP15173 224 aa14.4□□□□□ -0.1
CLK3-224ENST00000568605 CDC25AP30304 524 aa14.4□□□□□ -0.1
CLK3-224ENST00000568605 ARL2P36404 184 aa14.4□□□□□ -0.1
CLK3-224ENST00000568605 NASPP49321 788 aaPredicted RBP14.4□□□□□ -0.1
CLK3-224ENST00000568605 RAB27AP51159 221 aa14.4□□□□□ -0.1
CLK3-224ENST00000568605 POU5F1BQ06416 359 aa14.4□□□□□ -0.1
CLK3-224ENST00000568605 NCBP1Q09161 790 aaKnown RBP14.4□□□□□ -0.1
CLK3-224ENST00000568605 CAPSQ13938 189 aa14.4□□□□□ -0.1
CLK3-224ENST00000568605 PTPAQ15257 358 aa14.4□□□□□ -0.1
CLK3-224ENST00000568605 ECM1Q16610 540 aa14.4□□□□□ -0.1
CLK3-224ENST00000568605 TWF2Q6IBS0 349 aaKnown RBP14.4□□□□□ -0.1
CLK3-224ENST00000568605 KRI1Q8N9T8 703 aaKnown RBP14.4□□□□□ -0.1
CLK3-224ENST00000568605 IFT74Q96LB3 600 aa14.4□□□□□ -0.1
CLK3-224ENST00000568605 DRC1Q96MC2 740 aa14.4□□□□□ -0.1
CLK3-224ENST00000568605 SAMD11Q96NU1 681 aa14.4□□□□□ -0.1
CLK3-224ENST00000568605 MMTAG2Q9BU76 263 aaKnown RBP14.4□□□□□ -0.1
CLK3-224ENST00000568605 C2orf40Q9H1Z8 148 aa14.4□□□□□ -0.1
CLK3-224ENST00000568605 IFT122Q9HBG6 1241 aa14.4□□□□□ -0.1
CLK3-224ENST00000568605 AGPAT5Q9NUQ2 364 aa14.4□□□□□ -0.1
CLK3-224ENST00000568605 MTMR10Q9NXD2 777 aa14.4□□□□□ -0.1
CLK3-224ENST00000568605 PIN4Q9Y237 131 aaKnown RBP14.4□□□□□ -0.1
CLK3-224ENST00000568605 RWDD3Q9Y3V2 267 aa14.4□□□□□ -0.1
CLK3-224ENST00000568605 PCDHB7Q9Y5E2 793 aa14.4□□□□□ -0.1
CLK3-224ENST00000568605 ATP6V1DQ9Y5K8 247 aa14.4□□□□□ -0.1
CLK3-224ENST00000568605 SRPRBQ9Y5M8 271 aaKnown RBP14.4□□□□□ -0.1
CLK3-224ENST00000568605 PHLPP2Q6ZVD8 1323 aa14.4□□□□□ -0.1
CLK3-224ENST00000568605 A0A087WWV3 80 aa14.39□□□□□ -0.11
CLK3-224ENST00000568605 E9PMD0 336 aa14.39□□□□□ -0.11
CLK3-224ENST00000568605 SSBP05455 408 aaKnown RBP eCLIP14.39□□□□□ -0.11
CLK3-224ENST00000568605 SKIP12755 728 aa14.39□□□□□ -0.11
CLK3-224ENST00000568605 IBSPP21815 317 aaPredicted RBP14.39□□□□□ -0.11
CLK3-224ENST00000568605 GLRA2P23416 452 aa14.39□□□□□ -0.11
CLK3-224ENST00000568605 MARCKSP29966 332 aaPredicted RBP14.39□□□□□ -0.11
CLK3-224ENST00000568605 PTENP60484 403 aa14.39□□□□□ -0.11
CLK3-224ENST00000568605 SLC39A14Q15043 492 aa14.39□□□□□ -0.11
CLK3-224ENST00000568605 TMEM119Q4V9L6 283 aa14.39□□□□□ -0.11
CLK3-224ENST00000568605 FOXD4L5Q5VV16 416 aaPredicted RBP14.39□□□□□ -0.11
CLK3-224ENST00000568605 MAEAQ7L5Y9 396 aa14.39□□□□□ -0.11
CLK3-224ENST00000568605 IFNLR1Q8IU57 520 aaPredicted RBP14.39□□□□□ -0.11
CLK3-224ENST00000568605 SP7Q8TDD2 431 aaPredicted RBP14.39□□□□□ -0.11
CLK3-224ENST00000568605 ASAP3Q8TDY4 903 aa14.39□□□□□ -0.11
CLK3-224ENST00000568605 FOXD4L4Q8WXT5 416 aaPredicted RBP14.39□□□□□ -0.11
CLK3-224ENST00000568605 CCSER1Q9C0I3 900 aa14.39□□□□□ -0.11
CLK3-224ENST00000568605 ELAC1Q9H777 363 aaKnown RBP14.39□□□□□ -0.11
CLK3-224ENST00000568605 TMEM161AQ9NX61 479 aa14.39□□□□□ -0.11
CLK3-224ENST00000568605 FBXO2Q9UK22 296 aaPredicted RBP14.39□□□□□ -0.11
CLK3-224ENST00000568605 CFAP45Q9UL16 551 aa14.39□□□□□ -0.11
CLK3-224ENST00000568605 C9IYK1 514 aa14.38□□□□□ -0.11
CLK3-224ENST00000568605 INO80B-WBP1J3KQ70 363 aa14.38□□□□□ -0.11
CLK3-224ENST00000568605 SPTLC2O15270 562 aa14.38□□□□□ -0.11
CLK3-224ENST00000568605 MGEA5O60502 916 aa14.38□□□□□ -0.11
CLK3-224ENST00000568605 PPP6R2O75170 966 aa14.38□□□□□ -0.11
CLK3-224ENST00000568605 SLC34A2O95436 690 aa14.38□□□□□ -0.11
CLK3-224ENST00000568605 FGFR4P22455 802 aa14.38□□□□□ -0.11
CLK3-224ENST00000568605 AXLP30530 894 aa14.38□□□□□ -0.11
CLK3-224ENST00000568605 NAMPTP43490 491 aa14.38□□□□□ -0.11
CLK3-224ENST00000568605 TAP1Q03518 808 aa14.38□□□□□ -0.11
CLK3-224ENST00000568605 GRB10Q13322 594 aa14.38□□□□□ -0.11
CLK3-224ENST00000568605 BTG3Q14201 252 aaPredicted RBP14.38□□□□□ -0.11
CLK3-224ENST00000568605 DSC3Q14574 896 aa14.38□□□□□ -0.11
CLK3-224ENST00000568605 CMTR2Q8IYT2 770 aaKnown RBP14.38□□□□□ -0.11
CLK3-224ENST00000568605 ABI1Q8IZP0 508 aa14.38□□□□□ -0.11
CLK3-224ENST00000568605 FIBCD1Q8N539 461 aa14.38□□□□□ -0.11
CLK3-224ENST00000568605 KCNG4Q8TDN1 519 aa14.38□□□□□ -0.11
CLK3-224ENST00000568605 RSPH1Q8WYR4 309 aa14.38□□□□□ -0.11
CLK3-224ENST00000568605 CCDC51Q96ER9 411 aa14.38□□□□□ -0.11
CLK3-224ENST00000568605 PNMA5Q96PV4 448 aa14.38□□□□□ -0.11
CLK3-224ENST00000568605 TGS1Q96RS0 853 aaKnown RBP14.38□□□□□ -0.11
CLK3-224ENST00000568605 CSRNP2Q9H175 543 aa14.38□□□□□ -0.11
CLK3-224ENST00000568605 GPRC5CQ9NQ84 441 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms