RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 PNMA5Q96PV4 448 aa10.41□□□□□ -0.74
LDLR-211ENST00000560173 FDXACB1Q9BRP7 624 aaPredicted RBP10.41□□□□□ -0.74
LDLR-211ENST00000560173 GCOM2Q9BZD3 368 aaPredicted RBP10.41□□□□□ -0.74
LDLR-211ENST00000560173 BHMT2Q9H2M3 363 aa10.41□□□□□ -0.74
LDLR-211ENST00000560173 IFT122Q9HBG6 1241 aa10.41□□□□□ -0.74
LDLR-211ENST00000560173 FBXO2Q9UK22 296 aaPredicted RBP10.41□□□□□ -0.74
LDLR-211ENST00000560173 TTC3P53804 2025 aa10.41□□□□□ -0.74
LDLR-211ENST00000560173 LCHNA4D1U4 455 aa10.4□□□□□ -0.74
LDLR-211ENST00000560173 ASAP2O43150 1006 aa10.4□□□□□ -0.74
LDLR-211ENST00000560173 TLL1O43897 1013 aa10.4□□□□□ -0.74
LDLR-211ENST00000560173 CSDE1O75534 798 aaKnown RBP10.4□□□□□ -0.74
LDLR-211ENST00000560173 ARHGEF15O94989 841 aa10.4□□□□□ -0.74
LDLR-211ENST00000560173 CA3P07451 260 aa10.4□□□□□ -0.74
LDLR-211ENST00000560173 FOSL2P15408 326 aa10.4□□□□□ -0.74
LDLR-211ENST00000560173 CYP11B2P19099 503 aa10.4□□□□□ -0.74
LDLR-211ENST00000560173 FGFR4P22455 802 aa10.4□□□□□ -0.74
LDLR-211ENST00000560173 GLRA2P23416 452 aa10.4□□□□□ -0.74
LDLR-211ENST00000560173 MARCKSP29966 332 aaPredicted RBP10.4□□□□□ -0.74
LDLR-211ENST00000560173 HTRA4P83105 476 aaPredicted RBP10.4□□□□□ -0.74
LDLR-211ENST00000560173 CEBPZQ03701 1054 aaKnown RBP10.4□□□□□ -0.74
LDLR-211ENST00000560173 CAPSQ13938 189 aa10.4□□□□□ -0.74
LDLR-211ENST00000560173 MXD4Q14582 209 aaPredicted RBP10.4□□□□□ -0.74
LDLR-211ENST00000560173 SLC39A14Q15043 492 aa10.4□□□□□ -0.74
LDLR-211ENST00000560173 TJAP1Q5JTD0 557 aa10.4□□□□□ -0.74
LDLR-211ENST00000560173 CABP7Q86V35 215 aa10.4□□□□□ -0.74
LDLR-211ENST00000560173 CRIPAKQ8N1N5 446 aa10.4□□□□□ -0.74
LDLR-211ENST00000560173 KCTD17Q8N5Z5 321 aa10.4□□□□□ -0.74
LDLR-211ENST00000560173 FAM122AQ96E09 287 aa10.4□□□□□ -0.74
LDLR-211ENST00000560173 RAD9AQ99638 391 aa10.4□□□□□ -0.74
LDLR-211ENST00000560173 ZBED2Q9BTP6 218 aa10.4□□□□□ -0.74
LDLR-211ENST00000560173 POLR3FQ9H1D9 316 aaPredicted RBP10.4□□□□□ -0.74
LDLR-211ENST00000560173 GPRC5CQ9NQ84 441 aa10.4□□□□□ -0.74
LDLR-211ENST00000560173 DNM3Q9UQ16 869 aa10.4□□□□□ -0.74
LDLR-211ENST00000560173 SRPRBQ9Y5M8 271 aaKnown RBP10.4□□□□□ -0.74
LDLR-211ENST00000560173 MYO9BQ13459 2157 aa10.4□□□□□ -0.74
LDLR-211ENST00000560173 COL4A6Q14031 1691 aa10.4□□□□□ -0.74
LDLR-211ENST00000560173 TRANK1O15050 2925 aa10.4□□□□□ -0.75
LDLR-211ENST00000560173 MYH15Q9Y2K3 1946 aa10.39□□□□□ -0.75
LDLR-211ENST00000560173 DENND3A2RUS2 1198 aa10.39□□□□□ -0.75
LDLR-211ENST00000560173 E9PMD0 336 aa10.39□□□□□ -0.75
LDLR-211ENST00000560173 BRD1O95696 1058 aa10.39□□□□□ -0.75
LDLR-211ENST00000560173 SRGAP2CP0DJJ0 459 aa10.39□□□□□ -0.75
LDLR-211ENST00000560173 SFPQP23246 707 aaKnown RBP eCLIP10.39□□□□□ -0.75
LDLR-211ENST00000560173 UBA7P41226 1012 aa10.39□□□□□ -0.75
LDLR-211ENST00000560173 PHKA2P46019 1235 aa10.39□□□□□ -0.75
LDLR-211ENST00000560173 PTENP60484 403 aa10.39□□□□□ -0.75
LDLR-211ENST00000560173 ZRSR1Q15695 479 aaKnown RBP10.39□□□□□ -0.75
LDLR-211ENST00000560173 PPP2R2DQ66LE6 453 aa10.39□□□□□ -0.75
LDLR-211ENST00000560173 SRGAP1Q7Z6B7 1085 aa10.39□□□□□ -0.75
LDLR-211ENST00000560173 IFNLR1Q8IU57 520 aaPredicted RBP10.39□□□□□ -0.75
LDLR-211ENST00000560173 NPAS4Q8IUM7 802 aa10.39□□□□□ -0.75
LDLR-211ENST00000560173 RNF149Q8NC42 400 aa10.39□□□□□ -0.75
LDLR-211ENST00000560173 LINC00301Q8NCQ3 95 aa10.39□□□□□ -0.75
LDLR-211ENST00000560173 SP7Q8TDD2 431 aaPredicted RBP10.39□□□□□ -0.75
LDLR-211ENST00000560173 ZNF396Q96N95 335 aaPredicted RBP10.39□□□□□ -0.75
LDLR-211ENST00000560173 CLIC6Q96NY7 704 aa10.39□□□□□ -0.75
LDLR-211ENST00000560173 ADAM2Q99965 735 aa10.39□□□□□ -0.75
LDLR-211ENST00000560173 INO80BQ9C086 356 aaPredicted RBP10.39□□□□□ -0.75
LDLR-211ENST00000560173 NT5C3AQ9H0P0 336 aa10.39□□□□□ -0.75
LDLR-211ENST00000560173 CSRNP2Q9H175 543 aa10.39□□□□□ -0.75
LDLR-211ENST00000560173 ZNF576Q9H609 170 aa10.39□□□□□ -0.75
LDLR-211ENST00000560173 MINDY3Q9H8M7 445 aa10.39□□□□□ -0.75
LDLR-211ENST00000560173 SLC28A3Q9HAS3 691 aa10.39□□□□□ -0.75
LDLR-211ENST00000560173 RC3H2Q9HBD1 1191 aaKnown RBP10.39□□□□□ -0.75
LDLR-211ENST00000560173 RGS18Q9NS28 235 aa10.39□□□□□ -0.75
LDLR-211ENST00000560173 C1orf112Q9NSG2 853 aa10.39□□□□□ -0.75
LDLR-211ENST00000560173 ZDHHC9Q9Y397 364 aa10.39□□□□□ -0.75
LDLR-211ENST00000560173 C9IYK1 514 aa10.38□□□□□ -0.75
LDLR-211ENST00000560173 UPP2O95045 317 aa10.38□□□□□ -0.75
LDLR-211ENST00000560173 YEATS4O95619 227 aa10.38□□□□□ -0.75
LDLR-211ENST00000560173 SARSP49591 514 aaKnown RBP10.38□□□□□ -0.75
LDLR-211ENST00000560173 FAM189BP81408 668 aa10.38□□□□□ -0.75
LDLR-211ENST00000560173 TAP1Q03518 808 aa10.38□□□□□ -0.75
LDLR-211ENST00000560173 POU5F1BQ06416 359 aa10.38□□□□□ -0.75
LDLR-211ENST00000560173 TFDP1Q14186 410 aa10.38□□□□□ -0.75
LDLR-211ENST00000560173 STK38Q15208 465 aa10.38□□□□□ -0.75
LDLR-211ENST00000560173 FAM102BQ5T8I3 360 aa10.38□□□□□ -0.75
LDLR-211ENST00000560173 USP49Q70CQ1 688 aa10.38□□□□□ -0.75
LDLR-211ENST00000560173 SLC24A5Q71RS6 500 aa10.38□□□□□ -0.75
LDLR-211ENST00000560173 MAEAQ7L5Y9 396 aa10.38□□□□□ -0.75
LDLR-211ENST00000560173 CATSPER4Q7RTX7 472 aa10.38□□□□□ -0.75
LDLR-211ENST00000560173 KRI1Q8N9T8 703 aaKnown RBP10.38□□□□□ -0.75
LDLR-211ENST00000560173 LRRC15Q8TF66 581 aa10.38□□□□□ -0.75
LDLR-211ENST00000560173 BSNDQ8WZ55 320 aa10.38□□□□□ -0.75
LDLR-211ENST00000560173 CALML4Q96GE6 196 aa10.38□□□□□ -0.75
LDLR-211ENST00000560173 CDK5RAP3Q96JB5 506 aa10.38□□□□□ -0.75
LDLR-211ENST00000560173 YME1L1Q96TA2 773 aa10.38□□□□□ -0.75
LDLR-211ENST00000560173 PLIN2Q99541 437 aa10.38□□□□□ -0.75
LDLR-211ENST00000560173 RUSC1Q9BVN2 902 aa10.38□□□□□ -0.75
LDLR-211ENST00000560173 NFKBIZQ9BYH8 718 aa10.38□□□□□ -0.75
LDLR-211ENST00000560173 CCSER1Q9C0I3 900 aa10.38□□□□□ -0.75
LDLR-211ENST00000560173 TFIP11Q9UBB9 837 aaKnown RBP10.38□□□□□ -0.75
LDLR-211ENST00000560173 INSL6Q9Y581 213 aa10.38□□□□□ -0.75
LDLR-211ENST00000560173 LINC01553A4QN01 128 aa10.37□□□□□ -0.75
LDLR-211ENST00000560173 SPTLC2O15270 562 aa10.37□□□□□ -0.75
LDLR-211ENST00000560173 DGKIO75912 1065 aa10.37□□□□□ -0.75
LDLR-211ENST00000560173 PLA2G4BP0C869 781 aa10.37□□□□□ -0.75
LDLR-211ENST00000560173 STAG3L1P0CL83 205 aa10.37□□□□□ -0.75
LDLR-211ENST00000560173 PLCG1P19174 1290 aa10.37□□□□□ -0.75
LDLR-211ENST00000560173 GUCY2CP25092 1073 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms