RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 SLTMQ9NWH9 1034 aaKnown RBP eCLIP18.99■□□□□ 0.63
SYNE3-202ENST00000553340 RABGAP1Q9Y3P9 1069 aa18.99■□□□□ 0.63
SYNE3-202ENST00000553340 MGRN1O60291 552 aa18.98■□□□□ 0.63
SYNE3-202ENST00000553340 KRT13P13646 458 aa18.98■□□□□ 0.63
SYNE3-202ENST00000553340 ITIH4Q14624 930 aa18.98■□□□□ 0.63
SYNE3-202ENST00000553340 AMIGO3Q86WK7 504 aa18.98■□□□□ 0.63
SYNE3-202ENST00000553340 ATXN2LQ8WWM7 1075 aaKnown RBP18.98■□□□□ 0.63
SYNE3-202ENST00000553340 RNF25Q96BH1 459 aaPredicted RBP18.98■□□□□ 0.63
SYNE3-202ENST00000553340 ARHGEF26Q96DR7 871 aa18.98■□□□□ 0.63
SYNE3-202ENST00000553340 THAP2Q9H0W7 228 aa18.98■□□□□ 0.63
SYNE3-202ENST00000553340 SEPT11Q9NVA2 429 aaKnown RBP18.98■□□□□ 0.63
SYNE3-202ENST00000553340 ANKRD62A6NC57 917 aa18.98■□□□□ 0.63
SYNE3-202ENST00000553340 EIF3DO15371 548 aaKnown RBP eCLIP18.98■□□□□ 0.63
SYNE3-202ENST00000553340 EYA4O95677 639 aa18.98■□□□□ 0.63
SYNE3-202ENST00000553340 GBP1P32455 592 aa18.98■□□□□ 0.63
SYNE3-202ENST00000553340 ELF1P32519 619 aa18.98■□□□□ 0.63
SYNE3-202ENST00000553340 SLC29A2Q14542 456 aa18.98■□□□□ 0.63
SYNE3-202ENST00000553340 C6orf118Q5T5N4 469 aa18.98■□□□□ 0.63
SYNE3-202ENST00000553340 ZDHHC24Q6UX98 284 aa18.98■□□□□ 0.63
SYNE3-202ENST00000553340 LENG9Q96B70 501 aa18.98■□□□□ 0.63
SYNE3-202ENST00000553340 MKNK1Q9BUB5 465 aa18.98■□□□□ 0.63
SYNE3-202ENST00000553340 BCAS3Q9H6U6 928 aa18.98■□□□□ 0.63
SYNE3-202ENST00000553340 CNOT7Q9UIV1 285 aaKnown RBP18.98■□□□□ 0.63
SYNE3-202ENST00000553340 HSPA6P17066 643 aa18.97■□□□□ 0.63
SYNE3-202ENST00000553340 ADCY2Q08462 1091 aa18.97■□□□□ 0.63
SYNE3-202ENST00000553340 PIGWQ7Z7B1 504 aa18.97■□□□□ 0.63
SYNE3-202ENST00000553340 ALG3Q92685 438 aa18.97■□□□□ 0.63
SYNE3-202ENST00000553340 AZI2Q9H6S1 392 aa18.97■□□□□ 0.63
SYNE3-202ENST00000553340 INTS9Q9NV88 658 aaKnown RBP18.97■□□□□ 0.63
SYNE3-202ENST00000553340 SAMD15Q9P1V8 674 aa18.97■□□□□ 0.63
SYNE3-202ENST00000553340 MTRF1LQ9UGC7 380 aaKnown RBP18.97■□□□□ 0.63
SYNE3-202ENST00000553340 SYNGAP1Q96PV0 1343 aa18.97■□□□□ 0.63
SYNE3-202ENST00000553340 SFI1A8K8P3 1242 aa18.97■□□□□ 0.63
SYNE3-202ENST00000553340 PHF2O75151 1096 aa18.97■□□□□ 0.63
SYNE3-202ENST00000553340 FAM13AO94988 1023 aa18.97■□□□□ 0.63
SYNE3-202ENST00000553340 AGTP01019 485 aa18.97■□□□□ 0.63
SYNE3-202ENST00000553340 GSTA1P08263 222 aa18.97■□□□□ 0.63
SYNE3-202ENST00000553340 VCAM1P19320 739 aa18.97■□□□□ 0.63
SYNE3-202ENST00000553340 CHRNA3P32297 505 aa18.97■□□□□ 0.63
SYNE3-202ENST00000553340 GTF2IP78347 998 aa18.97■□□□□ 0.63
SYNE3-202ENST00000553340 NFIL3Q16649 462 aa18.97■□□□□ 0.63
SYNE3-202ENST00000553340 PTF1AQ7RTS3 328 aa18.97■□□□□ 0.63
SYNE3-202ENST00000553340 RHOT2Q8IXI1 618 aa18.97■□□□□ 0.63
SYNE3-202ENST00000553340 POLR3CQ9BUI4 534 aaPredicted RBP18.97■□□□□ 0.63
SYNE3-202ENST00000553340 ADAM7Q9H2U9 754 aa18.97■□□□□ 0.63
SYNE3-202ENST00000553340 PARP2Q9UGN5 583 aa18.97■□□□□ 0.63
SYNE3-202ENST00000553340 SMIM23A6NLE4 172 aa18.96■□□□□ 0.63
SYNE3-202ENST00000553340 FAM86B1E9PN63 330 aa18.96■□□□□ 0.63
SYNE3-202ENST00000553340 FAM86B2P0C5J1 330 aa18.96■□□□□ 0.63
SYNE3-202ENST00000553340 PPP1R7Q15435 360 aa18.96■□□□□ 0.63
SYNE3-202ENST00000553340 COL23A1Q86Y22 540 aaPredicted RBP18.96■□□□□ 0.63
SYNE3-202ENST00000553340 GPR88Q9GZN0 384 aa18.96■□□□□ 0.63
SYNE3-202ENST00000553340 TMOD4Q9NZQ9 345 aa18.96■□□□□ 0.63
SYNE3-202ENST00000553340 TRPC6Q9Y210 931 aa18.96■□□□□ 0.63
SYNE3-202ENST00000553340 FRMPD4Q14CM0 1322 aa18.96■□□□□ 0.63
SYNE3-202ENST00000553340 MIF4GDA9UHW6 222 aaKnown RBP18.96■□□□□ 0.63
SYNE3-202ENST00000553340 PODXLO00592 558 aa18.96■□□□□ 0.63
SYNE3-202ENST00000553340 OPLAHO14841 1288 aa18.96■□□□□ 0.63
SYNE3-202ENST00000553340 HLA-DOAP06340 250 aa18.96■□□□□ 0.63
SYNE3-202ENST00000553340 ELF3P78545 371 aaPredicted RBP18.96■□□□□ 0.63
SYNE3-202ENST00000553340 RINT1Q6NUQ1 792 aa18.96■□□□□ 0.63
SYNE3-202ENST00000553340 MYCT1Q8N699 235 aa18.96■□□□□ 0.63
SYNE3-202ENST00000553340 UBL4BQ8N7F7 174 aa18.96■□□□□ 0.63
SYNE3-202ENST00000553340 C18orf8Q96DM3 657 aa18.96■□□□□ 0.63
SYNE3-202ENST00000553340 P2RX7Q99572 595 aaKnown RBP18.96■□□□□ 0.63
SYNE3-202ENST00000553340 EIF2AK1Q9BQI3 630 aaKnown RBP18.96■□□□□ 0.63
SYNE3-202ENST00000553340 STMN4Q9H169 189 aaPredicted RBP18.96■□□□□ 0.63
SYNE3-202ENST00000553340 TAS2R14Q9NYV8 317 aa18.96■□□□□ 0.63
SYNE3-202ENST00000553340 APEX2Q9UBZ4 518 aa18.96■□□□□ 0.63
SYNE3-202ENST00000553340 CCNL1Q9UK58 526 aaPredicted RBP18.96■□□□□ 0.63
SYNE3-202ENST00000553340 COG5Q9UP83 839 aa18.96■□□□□ 0.63
SYNE3-202ENST00000553340 ALG6Q9Y672 507 aa18.96■□□□□ 0.63
SYNE3-202ENST00000553340 ZMYM2Q9UBW7 1377 aa18.96■□□□□ 0.63
SYNE3-202ENST00000553340 NMT1P30419 496 aaKnown RBP18.95■□□□□ 0.62
SYNE3-202ENST00000553340 PTGIRP43119 386 aa18.95■□□□□ 0.62
SYNE3-202ENST00000553340 IFI35P80217 286 aaPredicted RBP18.95■□□□□ 0.62
SYNE3-202ENST00000553340 HIBCHQ6NVY1 386 aaPredicted RBP18.95■□□□□ 0.62
SYNE3-202ENST00000553340 LRRC34Q8IZ02 419 aa18.95■□□□□ 0.62
SYNE3-202ENST00000553340 KCTD17Q8N5Z5 321 aa18.95■□□□□ 0.62
SYNE3-202ENST00000553340 TBC1D16Q8TBP0 767 aa18.95■□□□□ 0.62
SYNE3-202ENST00000553340 N4BP2L2Q92802 583 aaPredicted RBP18.95■□□□□ 0.62
SYNE3-202ENST00000553340 INTS2Q9H0H0 1204 aaKnown RBP18.95■□□□□ 0.62
SYNE3-202ENST00000553340 USP40Q9NVE5 1235 aa18.95■□□□□ 0.62
SYNE3-202ENST00000553340 GRHL1Q9NZI5 618 aa18.95■□□□□ 0.62
SYNE3-202ENST00000553340 POLLQ9UGP5 575 aa18.95■□□□□ 0.62
SYNE3-202ENST00000553340 EPB41L3Q9Y2J2 1087 aaPredicted RBP18.95■□□□□ 0.62
SYNE3-202ENST00000553340 RPTORQ8N122 1335 aa18.95■□□□□ 0.62
SYNE3-202ENST00000553340 MSH4O15457 936 aa18.95■□□□□ 0.62
SYNE3-202ENST00000553340 FOSP01100 380 aaPredicted RBP18.95■□□□□ 0.62
SYNE3-202ENST00000553340 SREBF1P36956 1147 aa18.95■□□□□ 0.62
SYNE3-202ENST00000553340 SLC15A2Q16348 729 aa18.95■□□□□ 0.62
SYNE3-202ENST00000553340 CBWD6Q4V339 395 aa18.95■□□□□ 0.62
SYNE3-202ENST00000553340 CBWD3Q5JTY5 395 aa18.95■□□□□ 0.62
SYNE3-202ENST00000553340 CBWD5Q5RIA9 395 aa18.95■□□□□ 0.62
SYNE3-202ENST00000553340 DCAF4Q8WV16 495 aa18.95■□□□□ 0.62
SYNE3-202ENST00000553340 CCDC17Q96LX7 622 aa18.95■□□□□ 0.62
SYNE3-202ENST00000553340 NSRP1Q9H0G5 558 aaKnown RBP18.95■□□□□ 0.62
SYNE3-202ENST00000553340 IKZF4Q9H2S9 585 aa18.95■□□□□ 0.62
SYNE3-202ENST00000553340 SEMA4AQ9H3S1 761 aa18.95■□□□□ 0.62
SYNE3-202ENST00000553340 CCDC134Q9H6E4 229 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 1338.9 ms