RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 KCNJ18B7U540 433 aa5.7□□□□□ -1.5
USP28-213ENST00000544967 F8W031 263 aaPredicted RBP5.7□□□□□ -1.5
USP28-213ENST00000544967 ATP2A1O14983 1001 aa5.7□□□□□ -1.5
USP28-213ENST00000544967 CA12O43570 354 aa5.7□□□□□ -1.5
USP28-213ENST00000544967 CELF2O95319 508 aaKnown RBP5.7□□□□□ -1.5
USP28-213ENST00000544967 FMNL1O95466 1100 aaPredicted RBP5.7□□□□□ -1.5
USP28-213ENST00000544967 OAS1P00973 400 aaKnown RBP5.7□□□□□ -1.5
USP28-213ENST00000544967 MMP1P03956 469 aa5.7□□□□□ -1.5
USP28-213ENST00000544967 MARCKSP29966 332 aaPredicted RBP5.7□□□□□ -1.5
USP28-213ENST00000544967 LIFRP42702 1097 aa5.7□□□□□ -1.5
USP28-213ENST00000544967 PSMC1P62191 440 aaKnown RBP5.7□□□□□ -1.5
USP28-213ENST00000544967 GUCY1B3Q02153 619 aa5.7□□□□□ -1.5
USP28-213ENST00000544967 KCNJ12Q14500 433 aa5.7□□□□□ -1.5
USP28-213ENST00000544967 NTRK3Q16288 839 aa5.7□□□□□ -1.5
USP28-213ENST00000544967 PARP6Q2NL67 630 aa5.7□□□□□ -1.5
USP28-213ENST00000544967 CCDC92Q53HC0 331 aaPredicted RBP5.7□□□□□ -1.5
USP28-213ENST00000544967 SYCP2LQ5T4T6 812 aa5.7□□□□□ -1.5
USP28-213ENST00000544967 POTEEQ6S8J3 1075 aa5.7□□□□□ -1.5
USP28-213ENST00000544967 FAM114A1Q8IWE2 563 aa5.7□□□□□ -1.5
USP28-213ENST00000544967 C2orf69Q8N8R5 385 aa5.7□□□□□ -1.5
USP28-213ENST00000544967 ADAMTS19Q8TE59 1207 aa5.7□□□□□ -1.5
USP28-213ENST00000544967 IFT43Q96FT9 208 aa5.7□□□□□ -1.5
USP28-213ENST00000544967 ZNF317Q96PQ6 595 aaPredicted RBP5.7□□□□□ -1.5
USP28-213ENST00000544967 CUEDC1Q9NWM3 386 aaPredicted RBP5.7□□□□□ -1.5
USP28-213ENST00000544967 WDR35Q9P2L0 1181 aa5.7□□□□□ -1.5
USP28-213ENST00000544967 ZBTB21Q9ULJ3 1066 aa5.7□□□□□ -1.5
USP28-213ENST00000544967 ANGEL1Q9UNK9 670 aaKnown RBP5.7□□□□□ -1.5
USP28-213ENST00000544967 SLC4A4Q9Y6R1 1079 aa5.7□□□□□ -1.5
USP28-213ENST00000544967 MANSC4A6NHS7 340 aaPredicted RBP5.69□□□□□ -1.5
USP28-213ENST00000544967 C19orf81C9J6K1 198 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 AP1G2O75843 785 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 RNF8O76064 485 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 ATP2A2P16615 1042 aaKnown RBP5.69□□□□□ -1.5
USP28-213ENST00000544967 PEX19P40855 299 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 MRPS25P82663 173 aaKnown RBP5.69□□□□□ -1.5
USP28-213ENST00000544967 SEC23AQ15436 765 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 SPA17Q15506 151 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 PPP2R5EQ16537 467 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 ACCSLQ4AC99 568 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 BTNL9Q6UXG8 535 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 HOOK3Q86VS8 718 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 ZSCAN29Q8IWY8 852 aaPredicted RBP5.69□□□□□ -1.5
USP28-213ENST00000544967 ENDOVQ8N8Q3 282 aaKnown RBP5.69□□□□□ -1.5
USP28-213ENST00000544967 GTF3C2Q8WUA4 911 aaPredicted RBP5.69□□□□□ -1.5
USP28-213ENST00000544967 RAPGEF5Q92565 580 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 PAGE5Q96GU1 130 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 RAB17Q9H0T7 212 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 ZHX3Q9H4I2 956 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 MAGEF1Q9HAY2 307 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 LUC7LQ9NQ29 371 aaKnown RBP5.69□□□□□ -1.5
USP28-213ENST00000544967 ARHGEF3Q9NR81 526 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 IRAK4Q9NWZ3 460 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 HDAC6Q9UBN7 1215 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 PRKAG2Q9UGJ0 569 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 TMX2Q9Y320 296 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 ZNFX1Q9P2E3 1918 aaKnown RBP5.69□□□□□ -1.5
USP28-213ENST00000544967 TTC26A0AVF1 554 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 TCP10L2B9ZVM9 353 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 CCDC188H7C350 402 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 POLR2DO15514 142 aaKnown RBP5.69□□□□□ -1.5
USP28-213ENST00000544967 LMNAP02545 664 aaKnown RBP5.69□□□□□ -1.5
USP28-213ENST00000544967 HLA-DOAP06340 250 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 ASNSP08243 561 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 IFNAR1P17181 557 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 ATP6V1C1P21283 382 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 ECE1P42892 770 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 CDK8P49336 464 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 CLCN2P51788 898 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 NOGQ13253 232 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 EAPPQ56P03 285 aaPredicted RBP5.69□□□□□ -1.5
USP28-213ENST00000544967 CCDC178Q5BJE1 867 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 HIBCHQ6NVY1 386 aaPredicted RBP5.69□□□□□ -1.5
USP28-213ENST00000544967 C16orf87Q6PH81 154 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 TBC1D10CQ8IV04 446 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 TRMT44Q8IYL2 757 aaKnown RBP5.69□□□□□ -1.5
USP28-213ENST00000544967 MIGA1Q8NAN2 632 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 VPS37AQ8NEZ2 397 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 IRGQQ8WZA9 623 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 SYN2Q92777 582 aaPredicted RBP5.69□□□□□ -1.5
USP28-213ENST00000544967 ZBTB10Q96DT7 871 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 PGM2Q96G03 612 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 NAF1Q96HR8 494 aaKnown RBP5.69□□□□□ -1.5
USP28-213ENST00000544967 GMCL1Q96IK5 515 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 RBM41Q96IZ5 413 aaKnown RBP5.69□□□□□ -1.5
USP28-213ENST00000544967 PLEKHG4BQ96PX9 1271 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 RAB3IPQ96QF0 476 aaPredicted RBP5.69□□□□□ -1.5
USP28-213ENST00000544967 XPO6Q96QU8 1125 aaKnown RBP5.69□□□□□ -1.5
USP28-213ENST00000544967 LDHAL6BQ9BYZ2 381 aaPredicted RBP5.69□□□□□ -1.5
USP28-213ENST00000544967 NACAP1Q9BZK3 213 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 STMN4Q9H169 189 aaPredicted RBP5.69□□□□□ -1.5
USP28-213ENST00000544967 VCXQ9H320 206 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 AS3MTQ9HBK9 375 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 DMAP1Q9NPF5 467 aaPredicted RBP5.69□□□□□ -1.5
USP28-213ENST00000544967 ITGB1BP2Q9UKP3 347 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 PCDHGA4Q9Y5G9 962 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 KIAA1217Q5T5P2 1943 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 PRSS47A8MTI9 375 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 IPO5O00410 1097 aaKnown RBP5.69□□□□□ -1.5
USP28-213ENST00000544967 WNT7AO00755 349 aa5.69□□□□□ -1.5
USP28-213ENST00000544967 ZSCAN9O15535 394 aaPredicted RBP5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms