RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 ASIC1P78348 528 aa12.83□□□□□ -0.36
YBX3-213ENST00000542641 MDM2Q00987 491 aaPredicted RBP12.83□□□□□ -0.36
YBX3-213ENST00000542641 MAPK7Q13164 816 aa12.83□□□□□ -0.36
YBX3-213ENST00000542641 POSTNQ15063 836 aa12.83□□□□□ -0.36
YBX3-213ENST00000542641 KIZQ2M2Z5 673 aa12.83□□□□□ -0.36
YBX3-213ENST00000542641 TRIM71Q2Q1W2 868 aaKnown RBP12.83□□□□□ -0.36
YBX3-213ENST00000542641 CNNM4Q6P4Q7 775 aa12.83□□□□□ -0.36
YBX3-213ENST00000542641 CCDC65Q8IXS2 484 aa12.83□□□□□ -0.36
YBX3-213ENST00000542641 ELOA2Q8IYF1 753 aaPredicted RBP12.83□□□□□ -0.36
YBX3-213ENST00000542641 ZNF710Q8N1W2 664 aa12.83□□□□□ -0.36
YBX3-213ENST00000542641 MYCT1Q8N699 235 aa12.83□□□□□ -0.36
YBX3-213ENST00000542641 ASAP3Q8TDY4 903 aa12.83□□□□□ -0.36
YBX3-213ENST00000542641 DPF3Q92784 378 aa12.83□□□□□ -0.36
YBX3-213ENST00000542641 ZNF668Q96K58 619 aaPredicted RBP12.83□□□□□ -0.36
YBX3-213ENST00000542641 NLRP4Q96MN2 994 aa12.83□□□□□ -0.36
YBX3-213ENST00000542641 SCLT1Q96NL6 688 aa12.83□□□□□ -0.36
YBX3-213ENST00000542641 PPP1R16BQ96T49 567 aa12.83□□□□□ -0.36
YBX3-213ENST00000542641 HIPK3Q9H422 1215 aa12.83□□□□□ -0.36
YBX3-213ENST00000542641 C17orf75Q9HAS0 396 aa12.83□□□□□ -0.36
YBX3-213ENST00000542641 PARVGQ9HBI0 331 aa12.83□□□□□ -0.36
YBX3-213ENST00000542641 PANK4Q9NVE7 773 aa12.83□□□□□ -0.36
YBX3-213ENST00000542641 LARSQ9P2J5 1176 aaKnown RBP12.83□□□□□ -0.36
YBX3-213ENST00000542641 TBX21Q9UL17 535 aa12.83□□□□□ -0.36
YBX3-213ENST00000542641 GINS2Q9Y248 185 aa12.83□□□□□ -0.36
YBX3-213ENST00000542641 KAT6AQ92794 2004 aa12.83□□□□□ -0.36
YBX3-213ENST00000542641 PLS3P13797 630 aa12.82□□□□□ -0.36
YBX3-213ENST00000542641 GPC3P51654 580 aa12.82□□□□□ -0.36
YBX3-213ENST00000542641 PEX3P56589 373 aa12.82□□□□□ -0.36
YBX3-213ENST00000542641 MRPS6P82932 125 aaKnown RBP12.82□□□□□ -0.36
YBX3-213ENST00000542641 RBL2Q08999 1139 aa12.82□□□□□ -0.36
YBX3-213ENST00000542641 DPYDQ12882 1025 aa12.82□□□□□ -0.36
YBX3-213ENST00000542641 DMP1Q13316 513 aaPredicted RBP12.82□□□□□ -0.36
YBX3-213ENST00000542641 PNOCQ13519 176 aa12.82□□□□□ -0.36
YBX3-213ENST00000542641 TFDP1Q14186 410 aa12.82□□□□□ -0.36
YBX3-213ENST00000542641 PPP2R5AQ15172 486 aa12.82□□□□□ -0.36
YBX3-213ENST00000542641 NFKBIBQ15653 356 aa12.82□□□□□ -0.36
YBX3-213ENST00000542641 CAMK4Q16566 473 aa12.82□□□□□ -0.36
YBX3-213ENST00000542641 ODR4Q5SWX8 454 aa12.82□□□□□ -0.36
YBX3-213ENST00000542641 ZNF618Q5T7W0 954 aa12.82□□□□□ -0.36
YBX3-213ENST00000542641 C7orf61Q8IZ16 206 aa12.82□□□□□ -0.36
YBX3-213ENST00000542641 RNF149Q8NC42 400 aa12.82□□□□□ -0.36
YBX3-213ENST00000542641 NLRP7Q8WX94 980 aa12.82□□□□□ -0.36
YBX3-213ENST00000542641 NOC4LQ9BVI4 516 aaKnown RBP12.82□□□□□ -0.36
YBX3-213ENST00000542641 CELF4Q9BZC1 486 aaKnown RBP12.82□□□□□ -0.36
YBX3-213ENST00000542641 PPP1R12CQ9BZL4 782 aa12.82□□□□□ -0.36
YBX3-213ENST00000542641 PRKAG2Q9UGJ0 569 aa12.82□□□□□ -0.36
YBX3-213ENST00000542641 KCNG1Q9UIX4 513 aa12.82□□□□□ -0.36
YBX3-213ENST00000542641 CDY2AQ9Y6F7 541 aa12.82□□□□□ -0.36
YBX3-213ENST00000542641 ARID2Q68CP9 1835 aa12.81□□□□□ -0.36
YBX3-213ENST00000542641 A0A087WZ62 844 aa12.81□□□□□ -0.36
YBX3-213ENST00000542641 PVALEFA0A1B0GWK0 134 aa12.81□□□□□ -0.36
YBX3-213ENST00000542641 TRIM43BA6NCK2 446 aa12.81□□□□□ -0.36
YBX3-213ENST00000542641 LRRIQ4A6NIV6 560 aa12.81□□□□□ -0.36
YBX3-213ENST00000542641 CCDC169A6NNP5 214 aa12.81□□□□□ -0.36
YBX3-213ENST00000542641 KIAA0355O15063 1070 aa12.81□□□□□ -0.36
YBX3-213ENST00000542641 GPR32O75388 356 aa12.81□□□□□ -0.36
YBX3-213ENST00000542641 SMC2O95347 1197 aa12.81□□□□□ -0.36
YBX3-213ENST00000542641 CHRNA1P02708 482 aa12.81□□□□□ -0.36
YBX3-213ENST00000542641 RPN1P04843 607 aaKnown RBP12.81□□□□□ -0.36
YBX3-213ENST00000542641 RAG1P15918 1043 aa12.81□□□□□ -0.36
YBX3-213ENST00000542641 SELPP16109 830 aa12.81□□□□□ -0.36
YBX3-213ENST00000542641 GAP43P17677 238 aa12.81□□□□□ -0.36
YBX3-213ENST00000542641 NAMPTP43490 491 aa12.81□□□□□ -0.36
YBX3-213ENST00000542641 NPTX2P47972 431 aa12.81□□□□□ -0.36
YBX3-213ENST00000542641 ZNF131P52739 623 aa12.81□□□□□ -0.36
YBX3-213ENST00000542641 SMTNP53814 917 aa12.81□□□□□ -0.36
YBX3-213ENST00000542641 PDAP1Q13442 181 aaKnown RBP12.81□□□□□ -0.36
YBX3-213ENST00000542641 CAPSQ13938 189 aa12.81□□□□□ -0.36
YBX3-213ENST00000542641 HERC4Q5GLZ8 1057 aaPredicted RBP12.81□□□□□ -0.36
YBX3-213ENST00000542641 UNC13DQ70J99 1090 aa12.81□□□□□ -0.36
YBX3-213ENST00000542641 ZNF410Q86VK4 478 aa12.81□□□□□ -0.36
YBX3-213ENST00000542641 BSNDQ8WZ55 320 aa12.81□□□□□ -0.36
YBX3-213ENST00000542641 TRIM43Q96BQ3 446 aaPredicted RBP12.81□□□□□ -0.36
YBX3-213ENST00000542641 FDXACB1Q9BRP7 624 aaPredicted RBP12.81□□□□□ -0.36
YBX3-213ENST00000542641 NUP62CLQ9H1M0 184 aa12.81□□□□□ -0.36
YBX3-213ENST00000542641 ADAMTS10Q9H324 1103 aa12.81□□□□□ -0.36
YBX3-213ENST00000542641 CLSTN2Q9H4D0 955 aa12.81□□□□□ -0.36
YBX3-213ENST00000542641 CDHR5Q9HBB8 845 aa12.81□□□□□ -0.36
YBX3-213ENST00000542641 KMT5AQ9NQR1 393 aa12.81□□□□□ -0.36
YBX3-213ENST00000542641 SEL1LQ9UBV2 794 aa12.81□□□□□ -0.36
YBX3-213ENST00000542641 TRPV2Q9Y5S1 764 aa12.81□□□□□ -0.36
YBX3-213ENST00000542641 LOXHD1Q8IVV2 1947 aa12.81□□□□□ -0.36
YBX3-213ENST00000542641 TRIP12Q14669 1992 aaPredicted RBP12.8□□□□□ -0.36
YBX3-213ENST00000542641 FRMD3A2A2Y4 597 aa12.8□□□□□ -0.36
YBX3-213ENST00000542641 TRAK2O60296 914 aa12.8□□□□□ -0.36
YBX3-213ENST00000542641 TIMP1P01033 207 aa12.8□□□□□ -0.36
YBX3-213ENST00000542641 IQCF3P0C7M6 154 aa12.8□□□□□ -0.36
YBX3-213ENST00000542641 CYP2C18P33260 490 aa12.8□□□□□ -0.36
YBX3-213ENST00000542641 PHKA2P46019 1235 aa12.8□□□□□ -0.36
YBX3-213ENST00000542641 CRYBB1P53674 252 aaPredicted RBP12.8□□□□□ -0.36
YBX3-213ENST00000542641 CCL23P55773 120 aa12.8□□□□□ -0.36
YBX3-213ENST00000542641 POU5F1BQ06416 359 aa12.8□□□□□ -0.36
YBX3-213ENST00000542641 MGAT3Q09327 533 aa12.8□□□□□ -0.36
YBX3-213ENST00000542641 SKOR2Q2VWA4 1001 aaPredicted RBP12.8□□□□□ -0.36
YBX3-213ENST00000542641 FAM26DQ5JW98 314 aa12.8□□□□□ -0.36
YBX3-213ENST00000542641 LRRC8DQ7L1W4 858 aa12.8□□□□□ -0.36
YBX3-213ENST00000542641 SFR1Q86XK3 245 aa12.8□□□□□ -0.36
YBX3-213ENST00000542641 FAM178BQ8IXR5 827 aa12.8□□□□□ -0.36
YBX3-213ENST00000542641 DEPTORQ8TB45 409 aa12.8□□□□□ -0.36
YBX3-213ENST00000542641 SPIRE2Q8WWL2 714 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms