RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 ERLEC1Q96DZ1 483 aa9.9□□□□□ -0.82
LIMCH1-202ENST00000381753 PAWRQ96IZ0 340 aaKnown RBP9.9□□□□□ -0.82
LIMCH1-202ENST00000381753 ISCA1Q9BUE6 129 aa9.9□□□□□ -0.82
LIMCH1-202ENST00000381753 GDPD2Q9HCC8 539 aa9.9□□□□□ -0.82
LIMCH1-202ENST00000381753 VTA1Q9NP79 307 aa9.9□□□□□ -0.82
LIMCH1-202ENST00000381753 ZSCAN22P10073 491 aaPredicted RBP9.9□□□□□ -0.83
LIMCH1-202ENST00000381753 ACRP10323 421 aa9.9□□□□□ -0.83
LIMCH1-202ENST00000381753 RTP1P59025 263 aa9.9□□□□□ -0.83
LIMCH1-202ENST00000381753 XKR3Q5GH77 459 aa9.9□□□□□ -0.83
LIMCH1-202ENST00000381753 INTS5Q6P9B9 1019 aaKnown RBP9.9□□□□□ -0.83
LIMCH1-202ENST00000381753 LRRC71Q8N4P6 559 aa9.9□□□□□ -0.83
LIMCH1-202ENST00000381753 CCDC110Q8TBZ0 833 aa9.9□□□□□ -0.83
LIMCH1-202ENST00000381753 NEK9Q8TD19 979 aa9.9□□□□□ -0.83
LIMCH1-202ENST00000381753 MTRF1LQ9UGC7 380 aaKnown RBP9.9□□□□□ -0.83
LIMCH1-202ENST00000381753 EMSYQ7Z589 1322 aa9.9□□□□□ -0.83
LIMCH1-202ENST00000381753 SPATA31D1Q6ZQQ2 1576 aa9.9□□□□□ -0.83
LIMCH1-202ENST00000381753 FAM95CA0A1B0GW59 222 aa9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 NDUFB5O43674 189 aa9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 PSMC2P35998 433 aaKnown RBP9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 RAB44Q7Z6P3 723 aaPredicted RBP9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 FAM83AQ86UY5 434 aa9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 DGKHQ86XP1 1220 aa9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 GLMNQ92990 594 aa9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 NAP1L3Q99457 506 aaPredicted RBP9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 DCP1AQ9NPI6 582 aaPredicted RBP9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 ZMYM6O95789 1325 aa9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 IRF6O14896 467 aa9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 PYGMP11217 842 aa9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 VCLP18206 1134 aa9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 ANKRD23Q86SG2 305 aa9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 TSSK1BQ9BXA7 367 aa9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 KCNH3Q9ULD8 1083 aa9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 MST1RQ04912 1400 aa9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 ZMYM4Q5VZL5 1548 aa9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 AASDHQ4L235 1098 aaPredicted RBP9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 FNDC3BQ53EP0 1204 aaKnown RBP9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 IQSEC1Q6DN90 963 aa9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 HASPINQ8TF76 798 aa9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 AGBL1Q96MI9 1066 aa9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 LSM14BQ9BX40 385 aaKnown RBP9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 KIAA1586Q9HCI6 787 aa9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 KLK14Q9P0G3 267 aa9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 IFNB1P01574 187 aa9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 GNSP15586 552 aa9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 AKT1P31749 480 aa9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 ANKS3Q6ZW76 656 aa9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 CCDC13Q8IYE1 715 aa9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 DYDC2Q96IM9 177 aa9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 CENPKQ9BS16 269 aa9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 TINF2Q9BSI4 451 aa9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 ZNF541Q9H0D2 1346 aa9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 SLC16A4O15374 487 aa9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 CLTBP09497 229 aa9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 VCAM1P19320 739 aa9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 CDK17Q00537 523 aa9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 GPM6BQ13491 265 aa9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 SGO2Q562F6 1265 aa9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 ZNF484Q5JVG2 852 aa9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 LGSNQ5TDP6 509 aa9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 TAF2Q6P1X5 1199 aa9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 ARHGAP18Q8N392 663 aa9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 CEP112Q8N8E3 955 aa9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 MCUQ8NE86 351 aa9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 DDI1Q8WTU0 396 aa9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 GTPBP2Q9BX10 602 aaKnown RBP9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 CUEDC2Q9H467 287 aa9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 CHST12Q9NRB3 414 aa9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 RPAP1Q9BWH6 1393 aaPredicted RBP9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 ALKQ9UM73 1620 aa9.89□□□□□ -0.83
LIMCH1-202ENST00000381753 CUTAO60888 179 aa9.88□□□□□ -0.83
LIMCH1-202ENST00000381753 ZNF394Q53GI3 561 aa9.88□□□□□ -0.83
LIMCH1-202ENST00000381753 SYCP2LQ5T4T6 812 aa9.88□□□□□ -0.83
LIMCH1-202ENST00000381753 GIMAP6Q6P9H5 292 aa9.88□□□□□ -0.83
LIMCH1-202ENST00000381753 TTC39CQ8N584 583 aa9.88□□□□□ -0.83
LIMCH1-202ENST00000381753 ZSCAN1Q8NBB4 408 aa9.88□□□□□ -0.83
LIMCH1-202ENST00000381753 HDAC11Q96DB2 347 aa9.88□□□□□ -0.83
LIMCH1-202ENST00000381753 IL17RAQ96F46 866 aa9.88□□□□□ -0.83
LIMCH1-202ENST00000381753 OXCT2Q9BYC2 517 aaPredicted RBP9.88□□□□□ -0.83
LIMCH1-202ENST00000381753 RNF186Q9NXI6 227 aa9.88□□□□□ -0.83
LIMCH1-202ENST00000381753 DDX20Q9UHI6 824 aaKnown RBP9.88□□□□□ -0.83
LIMCH1-202ENST00000381753 PCDHB11Q9Y5F2 797 aa9.88□□□□□ -0.83
LIMCH1-202ENST00000381753 POMCP01189 267 aa9.88□□□□□ -0.83
LIMCH1-202ENST00000381753 CPA1P15085 419 aa9.88□□□□□ -0.83
LIMCH1-202ENST00000381753 KLHL30Q0D2K2 578 aa9.88□□□□□ -0.83
LIMCH1-202ENST00000381753 HDAC1Q13547 482 aaPredicted RBP9.88□□□□□ -0.83
LIMCH1-202ENST00000381753 TTC31Q49AM3 519 aaPredicted RBP9.88□□□□□ -0.83
LIMCH1-202ENST00000381753 C20orf194Q5TEA3 1177 aa9.88□□□□□ -0.83
LIMCH1-202ENST00000381753 USP31Q70CQ4 1352 aa9.88□□□□□ -0.83
LIMCH1-202ENST00000381753 DCLK2Q8N568 766 aa9.88□□□□□ -0.83
LIMCH1-202ENST00000381753 RMDN1Q96DB5 314 aa9.88□□□□□ -0.83
LIMCH1-202ENST00000381753 OMDQ99983 421 aa9.88□□□□□ -0.83
LIMCH1-202ENST00000381753 C11orf84Q9BUA3 381 aaPredicted RBP9.88□□□□□ -0.83
LIMCH1-202ENST00000381753 SETD4Q9NVD3 440 aa9.88□□□□□ -0.83
LIMCH1-202ENST00000381753 NYAP2Q9P242 653 aa9.88□□□□□ -0.83
LIMCH1-202ENST00000381753 AFF4Q9UHB7 1163 aaKnown RBP9.88□□□□□ -0.83
LIMCH1-202ENST00000381753 DBNLQ9UJU6 430 aaKnown RBP9.88□□□□□ -0.83
LIMCH1-202ENST00000381753 LAD1O00515 517 aa9.88□□□□□ -0.83
LIMCH1-202ENST00000381753 GPIHBP1Q8IV16 184 aa9.88□□□□□ -0.83
LIMCH1-202ENST00000381753 FOPNLQ96NB1 174 aa9.88□□□□□ -0.83
LIMCH1-202ENST00000381753 FAM213AQ9BRX8 229 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms