RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 ZNF354CQ86Y25 554 aa20.67■□□□□ 0.9
USP48-201ENST00000308271 CEP95Q96GE4 821 aa20.67■□□□□ 0.9
USP48-201ENST00000308271 RBM41Q96IZ5 413 aaKnown RBP20.67■□□□□ 0.9
USP48-201ENST00000308271 GGT7Q9UJ14 662 aa20.67■□□□□ 0.9
USP48-201ENST00000308271 TMEM94Q12767 1356 aa20.67■□□□□ 0.9
USP48-201ENST00000308271 POTEFA5A3E0 1075 aa20.67■□□□□ 0.9
USP48-201ENST00000308271 POTEIP0CG38 1075 aa20.67■□□□□ 0.9
USP48-201ENST00000308271 POTEGQ6S5H5 508 aa20.67■□□□□ 0.9
USP48-201ENST00000308271 POTEEQ6S8J3 1075 aa20.67■□□□□ 0.9
USP48-201ENST00000308271 NEDD1Q8NHV4 660 aa20.67■□□□□ 0.9
USP48-201ENST00000308271 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.67■□□□□ 0.9
USP48-201ENST00000308271 KMT5AQ9NQR1 393 aa20.67■□□□□ 0.9
USP48-201ENST00000308271 PPLO60437 1756 aa20.67■□□□□ 0.9
USP48-201ENST00000308271 BMP3P12645 472 aa20.67■□□□□ 0.9
USP48-201ENST00000308271 JAMLQ86YT9 394 aa20.67■□□□□ 0.9
USP48-201ENST00000308271 XXYLT1Q8NBI6 393 aa20.67■□□□□ 0.9
USP48-201ENST00000308271 SLC35G2Q8TBE7 412 aa20.67■□□□□ 0.9
USP48-201ENST00000308271 AENQ8WTP8 325 aaKnown RBP20.67■□□□□ 0.9
USP48-201ENST00000308271 RAPGEF5Q92565 580 aa20.67■□□□□ 0.9
USP48-201ENST00000308271 SLIT1O75093 1534 aa20.67■□□□□ 0.9
USP48-201ENST00000308271 SLC16A3O15427 465 aaKnown RBP20.66■□□□□ 0.9
USP48-201ENST00000308271 SCTRP47872 440 aa20.66■□□□□ 0.9
USP48-201ENST00000308271 SBK1Q52WX2 424 aa20.66■□□□□ 0.9
USP48-201ENST00000308271 PIGOQ8TEQ8 1089 aa20.66■□□□□ 0.9
USP48-201ENST00000308271 TMOD4Q9NZQ9 345 aa20.66■□□□□ 0.9
USP48-201ENST00000308271 PPARGC1AQ9UBK2 798 aaKnown RBP20.66■□□□□ 0.9
USP48-201ENST00000308271 LARP7Q4G0J3 582 aaKnown RBP eCLIP20.66■□□□□ 0.9
USP48-201ENST00000308271 NXNQ6DKJ4 435 aa20.66■□□□□ 0.9
USP48-201ENST00000308271 NME8Q8N427 588 aa20.66■□□□□ 0.9
USP48-201ENST00000308271 TEX9Q8N6V9 391 aa20.66■□□□□ 0.9
USP48-201ENST00000308271 ASPHQ12797 758 aa20.66■□□□□ 0.9
USP48-201ENST00000308271 C12orf60Q5U649 245 aa20.66■□□□□ 0.9
USP48-201ENST00000308271 HEMGNQ9BXL5 484 aa20.66■□□□□ 0.9
USP48-201ENST00000308271 STK33Q9BYT3 514 aa20.66■□□□□ 0.9
USP48-201ENST00000308271 TULP2O00295 520 aa20.66■□□□□ 0.9
USP48-201ENST00000308271 CREB3O43889 395 aa20.66■□□□□ 0.9
USP48-201ENST00000308271 KRT37O76014 449 aa20.66■□□□□ 0.9
USP48-201ENST00000308271 TNNC2P02585 160 aa20.66■□□□□ 0.9
USP48-201ENST00000308271 ARFIP2P53365 341 aa20.66■□□□□ 0.9
USP48-201ENST00000308271 SKOR1P84550 965 aa20.66■□□□□ 0.9
USP48-201ENST00000308271 BIRC2Q13490 618 aa20.66■□□□□ 0.9
USP48-201ENST00000308271 KLHL38Q2WGJ6 581 aa20.66■□□□□ 0.9
USP48-201ENST00000308271 SYDE2Q5VT97 1194 aa20.66■□□□□ 0.9
USP48-201ENST00000308271 TTC17Q96AE7 1141 aa20.66■□□□□ 0.9
USP48-201ENST00000308271 CYTH2Q99418 400 aa20.66■□□□□ 0.9
USP48-201ENST00000308271 GINM1Q9NU53 330 aa20.66■□□□□ 0.9
USP48-201ENST00000308271 ARHGEF28Q8N1W1 1705 aaKnown RBP20.65■□□□□ 0.9
USP48-201ENST00000308271 LRRC10BA6NIK2 292 aa20.65■□□□□ 0.9
USP48-201ENST00000308271 ALAS1P13196 640 aa20.65■□□□□ 0.9
USP48-201ENST00000308271 GCLMP48507 274 aa20.65■□□□□ 0.9
USP48-201ENST00000308271 KLC1Q07866 573 aa20.65■□□□□ 0.9
USP48-201ENST00000308271 SYDE1Q6ZW31 735 aaPredicted RBP20.65■□□□□ 0.9
USP48-201ENST00000308271 KBTBD4Q9NVX7 518 aa20.65■□□□□ 0.9
USP48-201ENST00000308271 DCTN4Q9UJW0 460 aa20.65■□□□□ 0.9
USP48-201ENST00000308271 MROH2AA6NES4 1674 aa20.65■□□□□ 0.9
USP48-201ENST00000308271 ECM2O94769 699 aaPredicted RBP20.65■□□□□ 0.9
USP48-201ENST00000308271 CPP00450 1065 aa20.65■□□□□ 0.9
USP48-201ENST00000308271 UBXN2AP68543 259 aa20.65■□□□□ 0.9
USP48-201ENST00000308271 SLC30A9Q6PML9 568 aa20.65■□□□□ 0.9
USP48-201ENST00000308271 CRLF3Q8IUI8 442 aa20.65■□□□□ 0.9
USP48-201ENST00000308271 NSMCE1Q8WV22 266 aa20.65■□□□□ 0.9
USP48-201ENST00000308271 CCT6BQ92526 530 aa20.65■□□□□ 0.9
USP48-201ENST00000308271 USP17L15C9J2P7 530 aa20.65■□□□□ 0.9
USP48-201ENST00000308271 USP17L13C9JLJ4 530 aa20.65■□□□□ 0.9
USP48-201ENST00000308271 USP17L11C9JVI0 530 aa20.65■□□□□ 0.9
USP48-201ENST00000308271 USP17L18D6R9N7 530 aa20.65■□□□□ 0.9
USP48-201ENST00000308271 USP17L22D6RA61 530 aa20.65■□□□□ 0.9
USP48-201ENST00000308271 USP17L17D6RBQ6 530 aa20.65■□□□□ 0.9
USP48-201ENST00000308271 USP17L19D6RCP7 530 aa20.65■□□□□ 0.9
USP48-201ENST00000308271 USP17L20D6RJB6 530 aa20.65■□□□□ 0.9
USP48-201ENST00000308271 SLC12A2P55011 1212 aa20.65■□□□□ 0.9
USP48-201ENST00000308271 KRT17Q04695 432 aa20.65■□□□□ 0.9
USP48-201ENST00000308271 USP17L24Q0WX57 530 aa20.65■□□□□ 0.9
USP48-201ENST00000308271 USP17L6PQ6QN14 398 aa20.65■□□□□ 0.9
USP48-201ENST00000308271 AGPAT1Q99943 283 aa20.65■□□□□ 0.9
USP48-201ENST00000308271 INTS13Q9NVM9 706 aa20.65■□□□□ 0.9
USP48-201ENST00000308271 DYNLT1P63172 113 aa20.65■□□□□ 0.9
USP48-201ENST00000308271 ITIH4Q14624 930 aa20.65■□□□□ 0.9
USP48-201ENST00000308271 PCGF5Q86SE9 256 aa20.65■□□□□ 0.9
USP48-201ENST00000308271 ZNF526Q8TF50 670 aaPredicted RBP20.65■□□□□ 0.9
USP48-201ENST00000308271 MOV10L1Q9BXT6 1211 aaKnown RBP20.65■□□□□ 0.9
USP48-201ENST00000308271 CRCPO75575 148 aa20.64■□□□□ 0.9
USP48-201ENST00000308271 TMEM191BP0C7N4 346 aa20.64■□□□□ 0.9
USP48-201ENST00000308271 CYP19A1P11511 503 aaPredicted RBP20.64■□□□□ 0.9
USP48-201ENST00000308271 PABPC3Q9H361 631 aaKnown RBP20.64■□□□□ 0.9
USP48-201ENST00000308271 GSTA1P08263 222 aa20.64■□□□□ 0.89
USP48-201ENST00000308271 ACTN1P12814 892 aa20.64■□□□□ 0.89
USP48-201ENST00000308271 ABCD1P33897 745 aa20.64■□□□□ 0.89
USP48-201ENST00000308271 ANKRD20A4Q4UJ75 823 aa20.64■□□□□ 0.89
USP48-201ENST00000308271 ANKRD20A8PQ5CZ79 823 aa20.64■□□□□ 0.89
USP48-201ENST00000308271 ANKRD20A2Q5SQ80 823 aa20.64■□□□□ 0.89
USP48-201ENST00000308271 ANKRD20A1Q5TYW2 823 aa20.64■□□□□ 0.89
USP48-201ENST00000308271 ZNF746Q6NUN9 644 aaPredicted RBP20.64■□□□□ 0.89
USP48-201ENST00000308271 METTL13Q8N6R0 699 aa20.64■□□□□ 0.89
USP48-201ENST00000308271 PROCA1Q8NCQ7 364 aaPredicted RBP20.64■□□□□ 0.89
USP48-201ENST00000308271 CELF4Q9BZC1 486 aaKnown RBP20.64■□□□□ 0.89
USP48-201ENST00000308271 ADAM22Q9P0K1 906 aa20.64■□□□□ 0.89
USP48-201ENST00000308271 ARHGAP20Q9P2F6 1191 aa20.64■□□□□ 0.89
USP48-201ENST00000308271 TACC3Q9Y6A5 838 aa20.64■□□□□ 0.89
USP48-201ENST00000308271 PABPN1LA6NDY0 278 aaKnown RBP20.64■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms