RNA–Protein interactions for RNA: ENST00000509429.1

NIPBL-206, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 3

Gene NIPBL, Length 586 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-206ENST00000509429 TSR3Q9UJK0 312 aaKnown RBP11.79□□□□□ -0.52
NIPBL-206ENST00000509429 LCE2AQ5TA79 106 aaPredicted RBP11.77□□□□□ -0.53
NIPBL-206ENST00000509429 PPP1R18Q6NYC8 613 aa11.76□□□□□ -0.53
NIPBL-206ENST00000509429 HPS5Q9UPZ3 1129 aa11.74□□□□□ -0.53
NIPBL-206ENST00000509429 KIAA1468Q9P260 1216 aa11.73□□□□□ -0.53
NIPBL-206ENST00000509429 POTECB2RU33 542 aa11.72□□□□□ -0.53
NIPBL-206ENST00000509429 COL9A1P20849 921 aa11.71□□□□□ -0.53
NIPBL-206ENST00000509429 TJAP1Q5JTD0 557 aa11.71□□□□□ -0.53
NIPBL-206ENST00000509429 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.71□□□□□ -0.53
NIPBL-206ENST00000509429 STK17AQ9UEE5 414 aa11.7□□□□□ -0.54
NIPBL-206ENST00000509429 LRCH3Q96II8 777 aa11.69□□□□□ -0.54
NIPBL-206ENST00000509429 ONECUT3O60422 494 aaPredicted RBP11.68□□□□□ -0.54
NIPBL-206ENST00000509429 EVI5O60447 810 aa11.68□□□□□ -0.54
NIPBL-206ENST00000509429 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.68□□□□□ -0.54
NIPBL-206ENST00000509429 SEPT9Q9UHD8 586 aaPredicted RBP11.67□□□□□ -0.54
NIPBL-206ENST00000509429 MYT1Q01538 1121 aa11.66□□□□□ -0.54
NIPBL-206ENST00000509429 FAM98CQ17RN3 349 aaKnown RBP11.65□□□□□ -0.54
NIPBL-206ENST00000509429 PKDCCQ504Y2 493 aa11.63□□□□□ -0.55
NIPBL-206ENST00000509429 DGAT1O75907 488 aa11.61□□□□□ -0.55
NIPBL-206ENST00000509429 IL21Q9HBE4 155 aa11.61□□□□□ -0.55
NIPBL-206ENST00000509429 PPP4CP60510 307 aa11.6□□□□□ -0.55
NIPBL-206ENST00000509429 PCDHGA10Q9Y5H3 936 aa11.6□□□□□ -0.55
NIPBL-206ENST00000509429 MTRQ99707 1265 aa11.59□□□□□ -0.55
NIPBL-206ENST00000509429 PPP1R15BQ5SWA1 713 aa11.58□□□□□ -0.56
NIPBL-206ENST00000509429 TRIM67Q6ZTA4 783 aa11.56□□□□□ -0.56
NIPBL-206ENST00000509429 FBXW7Q969H0 707 aa11.56□□□□□ -0.56
NIPBL-206ENST00000509429 TRIM6-TRIM34B2RNG4 842 aa11.53□□□□□ -0.56
NIPBL-206ENST00000509429 INSM1Q01101 510 aaPredicted RBP11.53□□□□□ -0.56
NIPBL-206ENST00000509429 WFS1O76024 890 aa11.52□□□□□ -0.57
NIPBL-206ENST00000509429 GGCXP38435 758 aa11.52□□□□□ -0.57
NIPBL-206ENST00000509429 TYW1BQ6NUM6 668 aa11.52□□□□□ -0.57
NIPBL-206ENST00000509429 CRISPLD2Q9H0B8 497 aa11.52□□□□□ -0.57
NIPBL-206ENST00000509429 ZNF516Q92618 1163 aa11.51□□□□□ -0.57
NIPBL-206ENST00000509429 WIPF1O43516 503 aa11.49□□□□□ -0.57
NIPBL-206ENST00000509429 MAP3K9P80192 1104 aa11.48□□□□□ -0.57
NIPBL-206ENST00000509429 TMUB1Q9BVT8 246 aa11.47□□□□□ -0.57
NIPBL-206ENST00000509429 PHF14O94880 888 aa11.46□□□□□ -0.57
NIPBL-206ENST00000509429 ECM2O94769 699 aaPredicted RBP11.45□□□□□ -0.58
NIPBL-206ENST00000509429 PRR20EP86478 221 aa11.45□□□□□ -0.58
NIPBL-206ENST00000509429 PRR20CP86479 221 aa11.45□□□□□ -0.58
NIPBL-206ENST00000509429 PRR20DP86480 221 aa11.45□□□□□ -0.58
NIPBL-206ENST00000509429 PRR20BP86481 221 aa11.45□□□□□ -0.58
NIPBL-206ENST00000509429 PRR20AP86496 221 aa11.45□□□□□ -0.58
NIPBL-206ENST00000509429 C6orf132Q5T0Z8 1188 aa11.45□□□□□ -0.58
NIPBL-206ENST00000509429 NKX2-3Q8TAU0 364 aa11.45□□□□□ -0.58
NIPBL-206ENST00000509429 SLC19A1P41440 591 aa11.41□□□□□ -0.58
NIPBL-206ENST00000509429 FAM187AA6NFU0 413 aa11.4□□□□□ -0.58
NIPBL-206ENST00000509429 AAASQ9NRG9 546 aa11.4□□□□□ -0.58
NIPBL-206ENST00000509429 RGL2O15211 777 aa11.38□□□□□ -0.59
NIPBL-206ENST00000509429 ST8SIA5O15466 376 aa11.38□□□□□ -0.59
NIPBL-206ENST00000509429 PDE4AP27815 886 aa11.38□□□□□ -0.59
NIPBL-206ENST00000509429 NFX1Q12986 1120 aaKnown RBP11.38□□□□□ -0.59
NIPBL-206ENST00000509429 SAMD7Q7Z3H4 446 aa11.38□□□□□ -0.59
NIPBL-206ENST00000509429 PACS2Q86VP3 889 aa11.38□□□□□ -0.59
NIPBL-206ENST00000509429 SPRYD7Q5W111 196 aa11.36□□□□□ -0.59
NIPBL-206ENST00000509429 ZNF598Q86UK7 904 aaKnown RBP11.36□□□□□ -0.59
NIPBL-206ENST00000509429 EPAS1Q99814 870 aa11.34□□□□□ -0.59
NIPBL-206ENST00000509429 NCKAP5LQ9HCH0 1330 aa11.34□□□□□ -0.59
NIPBL-206ENST00000509429 EMID1Q96A84 441 aaPredicted RBP11.33□□□□□ -0.6
NIPBL-206ENST00000509429 SUZ12Q15022 739 aaKnown RBP11.32□□□□□ -0.6
NIPBL-206ENST00000509429 APLP1P51693 650 aa11.31□□□□□ -0.6
NIPBL-206ENST00000509429 TSKSQ9UJT2 592 aa11.31□□□□□ -0.6
NIPBL-206ENST00000509429 GDF9O60383 454 aa11.28□□□□□ -0.6
NIPBL-206ENST00000509429 RNF223E7ERA6 249 aa11.27□□□□□ -0.61
NIPBL-206ENST00000509429 EMILIN3Q9NT22 766 aa11.27□□□□□ -0.61
NIPBL-206ENST00000509429 FAM181BA6NEQ2 426 aa11.26□□□□□ -0.61
NIPBL-206ENST00000509429 C11orf95C9JLR9 678 aaPredicted RBP11.26□□□□□ -0.61
NIPBL-206ENST00000509429 TNFRSF10AO00220 468 aa11.26□□□□□ -0.61
NIPBL-206ENST00000509429 COPS2P61201 443 aa11.26□□□□□ -0.61
NIPBL-206ENST00000509429 ZNF697Q5TEC3 545 aa11.26□□□□□ -0.61
NIPBL-206ENST00000509429 CRIPAKQ8N1N5 446 aa11.25□□□□□ -0.61
NIPBL-206ENST00000509429 DDX27Q96GQ7 796 aaKnown RBP11.25□□□□□ -0.61
NIPBL-206ENST00000509429 RBM33Q96EV2 1170 aaKnown RBP11.24□□□□□ -0.61
NIPBL-206ENST00000509429 SMAPO00193 183 aa11.23□□□□□ -0.61
NIPBL-206ENST00000509429 ZPR1O75312 459 aa11.23□□□□□ -0.61
NIPBL-206ENST00000509429 LARP6Q9BRS8 491 aaKnown RBP11.23□□□□□ -0.61
NIPBL-206ENST00000509429 GMPR2Q9P2T1 348 aaKnown RBP11.23□□□□□ -0.61
NIPBL-206ENST00000509429 DACH1Q9UI36 760 aa11.22□□□□□ -0.61
NIPBL-206ENST00000509429 RNF40O75150 1001 aa11.2□□□□□ -0.62
NIPBL-206ENST00000509429 LCE2CQ5TA81 110 aa11.2□□□□□ -0.62
NIPBL-206ENST00000509429 HDGFP51858 240 aaKnown RBP11.19□□□□□ -0.62
NIPBL-206ENST00000509429 LIAT1Q6ZQX7 453 aa11.19□□□□□ -0.62
NIPBL-206ENST00000509429 HS6ST3Q8IZP7 471 aa11.19□□□□□ -0.62
NIPBL-206ENST00000509429 NECTIN2Q92692 538 aa11.19□□□□□ -0.62
NIPBL-206ENST00000509429 ANKLE1Q8NAG6 615 aa11.18□□□□□ -0.62
NIPBL-206ENST00000509429 MFSD10Q14728 455 aa11.16□□□□□ -0.62
NIPBL-206ENST00000509429 PKD2Q13563 968 aa11.15□□□□□ -0.62
NIPBL-206ENST00000509429 RYDENQ9NUL5 291 aaKnown RBP11.15□□□□□ -0.62
NIPBL-206ENST00000509429 TERTO14746 1132 aaKnown RBP11.14□□□□□ -0.63
NIPBL-206ENST00000509429 CDCA7LQ96GN5 454 aa11.14□□□□□ -0.63
NIPBL-206ENST00000509429 AVPP01185 164 aa11.13□□□□□ -0.63
NIPBL-206ENST00000509429 TATDN2Q93075 761 aa11.13□□□□□ -0.63
NIPBL-206ENST00000509429 AXIN1O15169 862 aa11.12□□□□□ -0.63
NIPBL-206ENST00000509429 NBPF26B4DH59 902 aa11.1□□□□□ -0.63
NIPBL-206ENST00000509429 C3orf80F5H4A9 247 aa11.1□□□□□ -0.63
NIPBL-206ENST00000509429 PRSS12P56730 875 aa11.1□□□□□ -0.63
NIPBL-206ENST00000509429 FAM198AQ9UFP1 575 aa11.1□□□□□ -0.63
NIPBL-206ENST00000509429 PNMA3Q9UL41 463 aa11.1□□□□□ -0.63
NIPBL-206ENST00000509429 CTC1Q2NKJ3 1217 aa11.09□□□□□ -0.63
NIPBL-206ENST00000509429 TSR1Q2NL82 804 aaKnown RBP11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms