RNA–Protein interactions for RNA: ENST00000560861.1

SNX1-212, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-212ENST00000560861 PDXKO00764 312 aa12.46□□□□□ -0.41
SNX1-212ENST00000560861 TGFB1I1O43294 461 aa12.46□□□□□ -0.41
SNX1-212ENST00000560861 HBP1O60381 514 aa12.46□□□□□ -0.41
SNX1-212ENST00000560861 KIF20AO95235 890 aa12.46□□□□□ -0.41
SNX1-212ENST00000560861 EEF1GP26641 437 aaKnown RBP12.46□□□□□ -0.41
SNX1-212ENST00000560861 SOX10P56693 466 aa12.46□□□□□ -0.41
SNX1-212ENST00000560861 GTF2BQ00403 316 aa12.46□□□□□ -0.41
SNX1-212ENST00000560861 SPAG1Q07617 926 aa12.46□□□□□ -0.41
SNX1-212ENST00000560861 KCNA1Q09470 495 aa12.46□□□□□ -0.41
SNX1-212ENST00000560861 MKRN4PQ13434 485 aaPredicted RBP12.46□□□□□ -0.41
SNX1-212ENST00000560861 ALCAMQ13740 583 aa12.46□□□□□ -0.41
SNX1-212ENST00000560861 KRT31Q15323 416 aa12.46□□□□□ -0.41
SNX1-212ENST00000560861 NFIL3Q16649 462 aa12.46□□□□□ -0.41
SNX1-212ENST00000560861 KNOP1Q1ED39 458 aaKnown RBP12.46□□□□□ -0.41
SNX1-212ENST00000560861 EDRF1Q3B7T1 1238 aa12.46□□□□□ -0.41
SNX1-212ENST00000560861 ZC2HC1CQ53FD0 456 aaPredicted RBP12.46□□□□□ -0.41
SNX1-212ENST00000560861 MAEAQ7L5Y9 396 aa12.46□□□□□ -0.41
SNX1-212ENST00000560861 TRMT1LQ7Z2T5 733 aaKnown RBP12.46□□□□□ -0.41
SNX1-212ENST00000560861 NELFCDQ8IXH7 590 aa12.46□□□□□ -0.41
SNX1-212ENST00000560861 FAM178BQ8IXR5 827 aa12.46□□□□□ -0.41
SNX1-212ENST00000560861 CSGALNACT2Q8N6G5 542 aa12.46□□□□□ -0.41
SNX1-212ENST00000560861 LINC01465Q8N7H1 131 aa12.46□□□□□ -0.41
SNX1-212ENST00000560861 CD99L2Q8TCZ2 262 aa12.46□□□□□ -0.41
SNX1-212ENST00000560861 ANP32BQ92688 251 aaKnown RBP12.46□□□□□ -0.41
SNX1-212ENST00000560861 GLG1Q92896 1179 aa12.46□□□□□ -0.41
SNX1-212ENST00000560861 LENG1Q96BZ8 264 aaPredicted RBP12.46□□□□□ -0.41
SNX1-212ENST00000560861 NAP1L5Q96NT1 182 aaPredicted RBP12.46□□□□□ -0.41
SNX1-212ENST00000560861 SRRTQ9BXP5 876 aaKnown RBP12.46□□□□□ -0.41
SNX1-212ENST00000560861 SRRDQ9UH36 339 aa12.46□□□□□ -0.41
SNX1-212ENST00000560861 FAM184BQ9ULE4 1060 aa12.46□□□□□ -0.41
SNX1-212ENST00000560861 KAT6AQ92794 2004 aa12.45□□□□□ -0.42
SNX1-212ENST00000560861 COL1A2P08123 1366 aa12.45□□□□□ -0.42
SNX1-212ENST00000560861 SCN10AQ9Y5Y9 1956 aa12.45□□□□□ -0.42
SNX1-212ENST00000560861 KCNJ18B7U540 433 aa12.45□□□□□ -0.42
SNX1-212ENST00000560861 GCNT3O95395 438 aa12.45□□□□□ -0.42
SNX1-212ENST00000560861 NPTX2P47972 431 aa12.45□□□□□ -0.42
SNX1-212ENST00000560861 PLCB2Q00722 1185 aa12.45□□□□□ -0.42
SNX1-212ENST00000560861 TRIM32Q13049 653 aa12.45□□□□□ -0.42
SNX1-212ENST00000560861 KCNJ12Q14500 433 aa12.45□□□□□ -0.42
SNX1-212ENST00000560861 HSP90AA4PQ58FG1 418 aa12.45□□□□□ -0.42
SNX1-212ENST00000560861 TCP11X2Q5H9J9 407 aa12.45□□□□□ -0.42
SNX1-212ENST00000560861 FAM102BQ5T8I3 360 aa12.45□□□□□ -0.42
SNX1-212ENST00000560861 TMEM161BQ8NDZ6 487 aa12.45□□□□□ -0.42
SNX1-212ENST00000560861 ASAP3Q8TDY4 903 aa12.45□□□□□ -0.42
SNX1-212ENST00000560861 TMEM174Q8WUU8 243 aa12.45□□□□□ -0.42
SNX1-212ENST00000560861 KAT2BQ92831 832 aa12.45□□□□□ -0.42
SNX1-212ENST00000560861 CEP63Q96MT8 703 aa12.45□□□□□ -0.42
SNX1-212ENST00000560861 POLR3FQ9H1D9 316 aaPredicted RBP12.45□□□□□ -0.42
SNX1-212ENST00000560861 UPF3AQ9H1J1 476 aaKnown RBP12.45□□□□□ -0.42
SNX1-212ENST00000560861 IKZF4Q9H2S9 585 aa12.45□□□□□ -0.42
SNX1-212ENST00000560861 RNPEPQ9H4A4 650 aa12.45□□□□□ -0.42
SNX1-212ENST00000560861 TYW1Q9NV66 732 aaKnown RBP12.45□□□□□ -0.42
SNX1-212ENST00000560861 ERAP1Q9NZ08 941 aa12.45□□□□□ -0.42
SNX1-212ENST00000560861 K7ENM7 598 aa12.44□□□□□ -0.42
SNX1-212ENST00000560861 HAS3O00219 553 aa12.44□□□□□ -0.42
SNX1-212ENST00000560861 DYNC1LI2O43237 492 aaPredicted RBP12.44□□□□□ -0.42
SNX1-212ENST00000560861 C22orf31O95567 290 aa12.44□□□□□ -0.42
SNX1-212ENST00000560861 F2P00734 622 aa12.44□□□□□ -0.42
SNX1-212ENST00000560861 ZNF286BP0CG31 522 aa12.44□□□□□ -0.42
SNX1-212ENST00000560861 AKR1A1P14550 325 aa12.44□□□□□ -0.42
SNX1-212ENST00000560861 GLRA2P23416 452 aa12.44□□□□□ -0.42
SNX1-212ENST00000560861 MARK3P27448 753 aa12.44□□□□□ -0.42
SNX1-212ENST00000560861 PBX1P40424 430 aa12.44□□□□□ -0.42
SNX1-212ENST00000560861 COPB1P53618 953 aaKnown RBP12.44□□□□□ -0.42
SNX1-212ENST00000560861 POLGP54098 1239 aaPredicted RBP12.44□□□□□ -0.42
SNX1-212ENST00000560861 MARSP56192 900 aaKnown RBP12.44□□□□□ -0.42
SNX1-212ENST00000560861 PEX3P56589 373 aa12.44□□□□□ -0.42
SNX1-212ENST00000560861 IRX5P78411 483 aaPredicted RBP12.44□□□□□ -0.42
SNX1-212ENST00000560861 FKBP3Q00688 224 aaKnown RBP12.44□□□□□ -0.42
SNX1-212ENST00000560861 DRP2Q13474 957 aa12.44□□□□□ -0.42
SNX1-212ENST00000560861 KIF22Q14807 665 aa12.44□□□□□ -0.42
SNX1-212ENST00000560861 NR1I3Q14994 352 aa12.44□□□□□ -0.42
SNX1-212ENST00000560861 TPD52L1Q16890 204 aaPredicted RBP12.44□□□□□ -0.42
SNX1-212ENST00000560861 ZNF484Q5JVG2 852 aa12.44□□□□□ -0.42
SNX1-212ENST00000560861 MAP3K21Q5TCX8 1036 aa12.44□□□□□ -0.42
SNX1-212ENST00000560861 MFSD14CQ5VZR4 134 aa12.44□□□□□ -0.42
SNX1-212ENST00000560861 HAUS6Q7Z4H7 955 aa12.44□□□□□ -0.42
SNX1-212ENST00000560861 TLK2Q86UE8 772 aa12.44□□□□□ -0.42
SNX1-212ENST00000560861 KSR1Q8IVT5 923 aa12.44□□□□□ -0.42
SNX1-212ENST00000560861 SLC17A8Q8NDX2 589 aa12.44□□□□□ -0.42
SNX1-212ENST00000560861 TMEM143Q96AN5 459 aa12.44□□□□□ -0.42
SNX1-212ENST00000560861 HVCN1Q96D96 273 aa12.44□□□□□ -0.42
SNX1-212ENST00000560861 TSG101Q99816 390 aa12.44□□□□□ -0.42
SNX1-212ENST00000560861 RTN4Q9NQC3 1192 aaKnown RBP12.44□□□□□ -0.42
SNX1-212ENST00000560861 PRDM10Q9NQV6 1147 aa12.44□□□□□ -0.42
SNX1-212ENST00000560861 DMAC2Q9NW81 257 aa12.44□□□□□ -0.42
SNX1-212ENST00000560861 ARHGAP28Q9P2N2 729 aa12.44□□□□□ -0.42
SNX1-212ENST00000560861 PCDHB13Q9Y5F0 798 aa12.44□□□□□ -0.42
SNX1-212ENST00000560861 FRMPD3Q5JV73 1810 aa12.44□□□□□ -0.42
SNX1-212ENST00000560861 H3BRB1 525 aa12.43□□□□□ -0.42
SNX1-212ENST00000560861 SLC16A4O15374 487 aa12.43□□□□□ -0.42
SNX1-212ENST00000560861 CBFA2T2O43439 604 aa12.43□□□□□ -0.42
SNX1-212ENST00000560861 GAS2O43903 313 aaKnown RBP12.43□□□□□ -0.42
SNX1-212ENST00000560861 DUSP11O75319 330 aaKnown RBP12.43□□□□□ -0.42
SNX1-212ENST00000560861 GNRH1P01148 92 aa12.43□□□□□ -0.42
SNX1-212ENST00000560861 HSPA8P11142 646 aaKnown RBP12.43□□□□□ -0.42
SNX1-212ENST00000560861 INSRRP14616 1297 aa12.43□□□□□ -0.42
SNX1-212ENST00000560861 CTCFP49711 727 aaPredicted RBP12.43□□□□□ -0.42
SNX1-212ENST00000560861 UBASH3AP57075 661 aa12.43□□□□□ -0.42
SNX1-212ENST00000560861 GJA9P57773 515 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms