RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 TRIM65Q6PJ69 517 aa18.47■□□□□ 0.55
LDLR-206ENST00000557958 DHX30Q7L2E3 1194 aaKnown RBP eCLIP18.47■□□□□ 0.55
LDLR-206ENST00000557958 DPP9Q86TI2 863 aa18.47■□□□□ 0.55
LDLR-206ENST00000557958 CAPNS2Q96L46 248 aa18.47■□□□□ 0.55
LDLR-206ENST00000557958 POLD4Q9HCU8 107 aa18.47■□□□□ 0.55
LDLR-206ENST00000557958 CEP72Q9P209 647 aa18.47■□□□□ 0.55
LDLR-206ENST00000557958 GABBR1Q9UBS5 961 aa18.47■□□□□ 0.55
LDLR-206ENST00000557958 PLAGL2Q9UPG8 496 aa18.47■□□□□ 0.55
LDLR-206ENST00000557958 FRMD4BQ9Y2L6 1034 aa18.47■□□□□ 0.55
LDLR-206ENST00000557958 ZMYM2Q9UBW7 1377 aa18.46■□□□□ 0.55
LDLR-206ENST00000557958 TGFB1I1O43294 461 aa18.46■□□□□ 0.55
LDLR-206ENST00000557958 AFPP02771 609 aaKnown RBP18.46■□□□□ 0.55
LDLR-206ENST00000557958 GNG11P61952 73 aa18.46■□□□□ 0.55
LDLR-206ENST00000557958 KCNH2Q12809 1159 aa18.46■□□□□ 0.55
LDLR-206ENST00000557958 CRHR2Q13324 411 aa18.46■□□□□ 0.55
LDLR-206ENST00000557958 ZC2HC1CQ53FD0 456 aaPredicted RBP18.46■□□□□ 0.55
LDLR-206ENST00000557958 PLEKHH3Q7Z736 793 aa18.46■□□□□ 0.55
LDLR-206ENST00000557958 DAW1Q8N136 415 aa18.46■□□□□ 0.55
LDLR-206ENST00000557958 CREBZFQ9NS37 354 aa18.46■□□□□ 0.55
LDLR-206ENST00000557958 BACH1O14867 736 aa18.46■□□□□ 0.54
LDLR-206ENST00000557958 NKRFO15226 690 aaKnown RBP eCLIP18.46■□□□□ 0.54
LDLR-206ENST00000557958 TLR2O60603 784 aa18.46■□□□□ 0.54
LDLR-206ENST00000557958 AKAP3O75969 853 aa18.46■□□□□ 0.54
LDLR-206ENST00000557958 CASQ1P31415 396 aa18.46■□□□□ 0.54
LDLR-206ENST00000557958 TM4SF4P48230 202 aa18.46■□□□□ 0.54
LDLR-206ENST00000557958 SMTNP53814 917 aa18.46■□□□□ 0.54
LDLR-206ENST00000557958 ACTR2P61160 394 aa18.46■□□□□ 0.54
LDLR-206ENST00000557958 SNRPFP62306 86 aaKnown RBP18.46■□□□□ 0.54
LDLR-206ENST00000557958 HTRA3P83110 453 aa18.46■□□□□ 0.54
LDLR-206ENST00000557958 UTP14CQ5TAP6 766 aaKnown RBP18.46■□□□□ 0.54
LDLR-206ENST00000557958 KIFAP3Q92845 792 aa18.46■□□□□ 0.54
LDLR-206ENST00000557958 ACCSQ96QU6 501 aa18.46■□□□□ 0.54
LDLR-206ENST00000557958 ST6GALNAC4Q9H4F1 302 aa18.46■□□□□ 0.54
LDLR-206ENST00000557958 C17orf75Q9HAS0 396 aa18.46■□□□□ 0.54
LDLR-206ENST00000557958 ZCCHC17Q9NP64 241 aaKnown RBP18.46■□□□□ 0.54
LDLR-206ENST00000557958 DNAJC25-GNG10A0A024R161 153 aa18.45■□□□□ 0.54
LDLR-206ENST00000557958 STRNO43815 780 aa18.45■□□□□ 0.54
LDLR-206ENST00000557958 PPP1R37O75864 691 aa18.45■□□□□ 0.54
LDLR-206ENST00000557958 MAPK4P31152 587 aa18.45■□□□□ 0.54
LDLR-206ENST00000557958 KCNA1Q09470 495 aa18.45■□□□□ 0.54
LDLR-206ENST00000557958 NOGQ13253 232 aa18.45■□□□□ 0.54
LDLR-206ENST00000557958 WDR59Q6PJI9 974 aa18.45■□□□□ 0.54
LDLR-206ENST00000557958 FAM186BQ8IYM0 893 aa18.45■□□□□ 0.54
LDLR-206ENST00000557958 CHP1Q99653 195 aa18.45■□□□□ 0.54
LDLR-206ENST00000557958 STRA6Q9BX79 667 aa18.45■□□□□ 0.54
LDLR-206ENST00000557958 BCAS3Q9H6U6 928 aa18.45■□□□□ 0.54
LDLR-206ENST00000557958 LZTFL1Q9NQ48 299 aa18.45■□□□□ 0.54
LDLR-206ENST00000557958 AGPAT3Q9NRZ7 376 aa18.45■□□□□ 0.54
LDLR-206ENST00000557958 MYO1AQ9UBC5 1043 aa18.45■□□□□ 0.54
LDLR-206ENST00000557958 CLIC2O15247 247 aa18.44■□□□□ 0.54
LDLR-206ENST00000557958 EDNRBP24530 442 aa18.44■□□□□ 0.54
LDLR-206ENST00000557958 ABCD1P33897 745 aa18.44■□□□□ 0.54
LDLR-206ENST00000557958 TCERG1LQ5VWI1 586 aa18.44■□□□□ 0.54
LDLR-206ENST00000557958 SWSAP1Q6NVH7 229 aa18.44■□□□□ 0.54
LDLR-206ENST00000557958 MAEAQ7L5Y9 396 aa18.44■□□□□ 0.54
LDLR-206ENST00000557958 TRMT1LQ7Z2T5 733 aaKnown RBP18.44■□□□□ 0.54
LDLR-206ENST00000557958 SLC9A9Q8IVB4 645 aa18.44■□□□□ 0.54
LDLR-206ENST00000557958 MCPH1Q8NEM0 835 aa18.44■□□□□ 0.54
LDLR-206ENST00000557958 SYN2Q92777 582 aaPredicted RBP18.44■□□□□ 0.54
LDLR-206ENST00000557958 HVCN1Q96D96 273 aa18.44■□□□□ 0.54
LDLR-206ENST00000557958 CEP170P1Q96L14 293 aa18.44■□□□□ 0.54
LDLR-206ENST00000557958 CCDC42Q96M95 316 aa18.44■□□□□ 0.54
LDLR-206ENST00000557958 LSM14BQ9BX40 385 aaKnown RBP18.44■□□□□ 0.54
LDLR-206ENST00000557958 NHEJ1Q9H9Q4 299 aaPredicted RBP18.44■□□□□ 0.54
LDLR-206ENST00000557958 KCNG1Q9UIX4 513 aa18.44■□□□□ 0.54
LDLR-206ENST00000557958 EXOC7Q9UPT5 735 aa18.44■□□□□ 0.54
LDLR-206ENST00000557958 DGAT1O75907 488 aa18.43■□□□□ 0.54
LDLR-206ENST00000557958 SUPT20HL2P0C7V6 817 aa18.43■□□□□ 0.54
LDLR-206ENST00000557958 TGFB3P10600 412 aa18.43■□□□□ 0.54
LDLR-206ENST00000557958 DMP1Q13316 513 aaPredicted RBP18.43■□□□□ 0.54
LDLR-206ENST00000557958 NEDD9Q14511 834 aa18.43■□□□□ 0.54
LDLR-206ENST00000557958 DCAF17Q5H9S7 520 aaPredicted RBP18.43■□□□□ 0.54
LDLR-206ENST00000557958 FAM102BQ5T8I3 360 aa18.43■□□□□ 0.54
LDLR-206ENST00000557958 C17orf99Q6UX52 265 aa18.43■□□□□ 0.54
LDLR-206ENST00000557958 ABHD15Q6UXT9 468 aa18.43■□□□□ 0.54
LDLR-206ENST00000557958 ANO5Q75V66 913 aa18.43■□□□□ 0.54
LDLR-206ENST00000557958 RRAGAQ7L523 313 aa18.43■□□□□ 0.54
LDLR-206ENST00000557958 ACRBPQ8NEB7 543 aa18.43■□□□□ 0.54
LDLR-206ENST00000557958 FGD4Q96M96 766 aa18.43■□□□□ 0.54
LDLR-206ENST00000557958 GTPBP10A4D1E9 387 aaKnown RBP18.43■□□□□ 0.54
LDLR-206ENST00000557958 EIF3CLB5ME19 914 aaKnown RBP18.43■□□□□ 0.54
LDLR-206ENST00000557958 CTIFO43310 598 aaKnown RBP18.43■□□□□ 0.54
LDLR-206ENST00000557958 KCNMA1Q12791 1236 aa18.43■□□□□ 0.54
LDLR-206ENST00000557958 SPA17Q15506 151 aa18.43■□□□□ 0.54
LDLR-206ENST00000557958 XKR3Q5GH77 459 aa18.43■□□□□ 0.54
LDLR-206ENST00000557958 PLA2G4FQ68DD2 849 aa18.43■□□□□ 0.54
LDLR-206ENST00000557958 KCNV1Q6PIU1 500 aa18.43■□□□□ 0.54
LDLR-206ENST00000557958 TXLNBQ8N3L3 684 aa18.43■□□□□ 0.54
LDLR-206ENST00000557958 TMEM174Q8WUU8 243 aa18.43■□□□□ 0.54
LDLR-206ENST00000557958 EIF3CQ99613 913 aaKnown RBP18.43■□□□□ 0.54
LDLR-206ENST00000557958 DEF6Q9H4E7 631 aa18.43■□□□□ 0.54
LDLR-206ENST00000557958 HAUS4Q9H6D7 363 aa18.43■□□□□ 0.54
LDLR-206ENST00000557958 L2HGDHQ9H9P8 463 aa18.43■□□□□ 0.54
LDLR-206ENST00000557958 PLCB1Q9NQ66 1216 aa18.43■□□□□ 0.54
LDLR-206ENST00000557958 LOC102724159A0A0B4J2E5 919 aa18.42■□□□□ 0.54
LDLR-206ENST00000557958 H0YCG3 227 aa18.42■□□□□ 0.54
LDLR-206ENST00000557958 GTF2BQ00403 316 aa18.42■□□□□ 0.54
LDLR-206ENST00000557958 PRKCEQ02156 737 aa18.42■□□□□ 0.54
LDLR-206ENST00000557958 PPP2R5AQ15172 486 aa18.42■□□□□ 0.54
LDLR-206ENST00000557958 PWP2Q15269 919 aaKnown RBP18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 240 ms