RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 CACNB1Q02641 598 aaPredicted RBP16.6■□□□□ 0.25
NUP54-213ENST00000513352 IER5Q5VY09 327 aa16.6■□□□□ 0.25
NUP54-213ENST00000513352 C1orf186Q6ZWK4 172 aa16.6■□□□□ 0.25
NUP54-213ENST00000513352 DYMQ7RTS9 669 aa16.6■□□□□ 0.25
NUP54-213ENST00000513352 RHPN2Q8IUC4 686 aa16.6■□□□□ 0.25
NUP54-213ENST00000513352 CNNM3Q8NE01 707 aa16.6■□□□□ 0.25
NUP54-213ENST00000513352 NLRP4Q96MN2 994 aa16.6■□□□□ 0.25
NUP54-213ENST00000513352 NOC4LQ9BVI4 516 aaKnown RBP16.6■□□□□ 0.25
NUP54-213ENST00000513352 MAGEF1Q9HAY2 307 aa16.6■□□□□ 0.25
NUP54-213ENST00000513352 TBX21Q9UL17 535 aa16.6■□□□□ 0.25
NUP54-213ENST00000513352 ZMYND8Q9ULU4 1186 aaPredicted RBP16.6■□□□□ 0.25
NUP54-213ENST00000513352 FAM237AA0A1B0GTK4 181 aa16.59■□□□□ 0.25
NUP54-213ENST00000513352 TRIM43BA6NCK2 446 aa16.59■□□□□ 0.25
NUP54-213ENST00000513352 ACTN4O43707 911 aaKnown RBP16.59■□□□□ 0.25
NUP54-213ENST00000513352 TBCAO75347 108 aaKnown RBP16.59■□□□□ 0.25
NUP54-213ENST00000513352 RPLP2P05387 115 aaKnown RBP16.59■□□□□ 0.25
NUP54-213ENST00000513352 SLFN14P0C7P3 912 aa16.59■□□□□ 0.25
NUP54-213ENST00000513352 SYN1P17600 705 aa16.59■□□□□ 0.25
NUP54-213ENST00000513352 CYP2C18P33260 490 aa16.59■□□□□ 0.25
NUP54-213ENST00000513352 CCL23P55773 120 aa16.59■□□□□ 0.25
NUP54-213ENST00000513352 AMPD3Q01432 767 aa16.59■□□□□ 0.25
NUP54-213ENST00000513352 MKRN4PQ13434 485 aaPredicted RBP16.59■□□□□ 0.25
NUP54-213ENST00000513352 KIZQ2M2Z5 673 aa16.59■□□□□ 0.25
NUP54-213ENST00000513352 TRIM71Q2Q1W2 868 aaKnown RBP16.59■□□□□ 0.25
NUP54-213ENST00000513352 LONRF3Q496Y0 759 aa16.59■□□□□ 0.25
NUP54-213ENST00000513352 ZNF618Q5T7W0 954 aa16.59■□□□□ 0.25
NUP54-213ENST00000513352 LRRC8DQ7L1W4 858 aa16.59■□□□□ 0.25
NUP54-213ENST00000513352 GRAMD1CQ8IYS0 662 aa16.59■□□□□ 0.25
NUP54-213ENST00000513352 NME8Q8N427 588 aa16.59■□□□□ 0.25
NUP54-213ENST00000513352 LINC01465Q8N7H1 131 aa16.59■□□□□ 0.25
NUP54-213ENST00000513352 NLRP7Q8WX94 980 aa16.59■□□□□ 0.25
NUP54-213ENST00000513352 KIFAP3Q92845 792 aa16.59■□□□□ 0.25
NUP54-213ENST00000513352 TRIM43Q96BQ3 446 aaPredicted RBP16.59■□□□□ 0.25
NUP54-213ENST00000513352 CCDC34Q96HJ3 373 aa16.59■□□□□ 0.25
NUP54-213ENST00000513352 DRC1Q96MC2 740 aa16.59■□□□□ 0.25
NUP54-213ENST00000513352 TIPINQ9BVW5 301 aa16.59■□□□□ 0.25
NUP54-213ENST00000513352 LRRC27Q9C0I9 530 aa16.59■□□□□ 0.25
NUP54-213ENST00000513352 TNMDQ9H2S6 317 aa16.59■□□□□ 0.25
NUP54-213ENST00000513352 LMBRD1Q9NUN5 540 aa16.59■□□□□ 0.25
NUP54-213ENST00000513352 KCND2Q9NZV8 630 aa16.59■□□□□ 0.25
NUP54-213ENST00000513352 COL4A3BPQ9Y5P4 624 aa16.59■□□□□ 0.25
NUP54-213ENST00000513352 TRPV2Q9Y5S1 764 aa16.59■□□□□ 0.25
NUP54-213ENST00000513352 CDY2AQ9Y6F7 541 aa16.59■□□□□ 0.25
NUP54-213ENST00000513352 UMODL1Q5DID0 1318 aa16.59■□□□□ 0.25
NUP54-213ENST00000513352 MYMKA6NI61 221 aa16.58■□□□□ 0.24
NUP54-213ENST00000513352 KINO60870 393 aaKnown RBP16.58■□□□□ 0.24
NUP54-213ENST00000513352 NR1I2O75469 434 aa16.58■□□□□ 0.24
NUP54-213ENST00000513352 FAM13AO94988 1023 aa16.58■□□□□ 0.24
NUP54-213ENST00000513352 IDEP14735 1019 aa16.58■□□□□ 0.24
NUP54-213ENST00000513352 SELPP16109 830 aa16.58■□□□□ 0.24
NUP54-213ENST00000513352 GUCY2CP25092 1073 aa16.58■□□□□ 0.24
NUP54-213ENST00000513352 NLRP11P59045 1033 aaKnown RBP16.58■□□□□ 0.24
NUP54-213ENST00000513352 ASIC1P78348 528 aa16.58■□□□□ 0.24
NUP54-213ENST00000513352 ARSHQ5FYA8 562 aa16.58■□□□□ 0.24
NUP54-213ENST00000513352 KRBA2Q6ZNG9 492 aa16.58■□□□□ 0.24
NUP54-213ENST00000513352 KSR1Q8IVT5 923 aa16.58■□□□□ 0.24
NUP54-213ENST00000513352 FMR1NBQ8N0W7 255 aaPredicted RBP16.58■□□□□ 0.24
NUP54-213ENST00000513352 ASAP3Q8TDY4 903 aa16.58■□□□□ 0.24
NUP54-213ENST00000513352 PRPF31Q8WWY3 499 aaKnown RBP16.58■□□□□ 0.24
NUP54-213ENST00000513352 DDX12PQ92771 950 aa16.58■□□□□ 0.24
NUP54-213ENST00000513352 IFT74Q96LB3 600 aa16.58■□□□□ 0.24
NUP54-213ENST00000513352 REEP2Q9BRK0 252 aa16.58■□□□□ 0.24
NUP54-213ENST00000513352 PCDH10Q9P2E7 1040 aa16.58■□□□□ 0.24
NUP54-213ENST00000513352 NR2E3Q9Y5X4 410 aa16.58■□□□□ 0.24
NUP54-213ENST00000513352 TANC1Q9C0D5 1861 aa16.58■□□□□ 0.24
NUP54-213ENST00000513352 LRRIQ4A6NIV6 560 aa16.57■□□□□ 0.24
NUP54-213ENST00000513352 SFI1A8K8P3 1242 aa16.57■□□□□ 0.24
NUP54-213ENST00000513352 RSPH10B2B2RC85 870 aa16.57■□□□□ 0.24
NUP54-213ENST00000513352 PITPNM1O00562 1244 aa16.57■□□□□ 0.24
NUP54-213ENST00000513352 KIAA0355O15063 1070 aa16.57■□□□□ 0.24
NUP54-213ENST00000513352 CAND2O75155 1236 aa16.57■□□□□ 0.24
NUP54-213ENST00000513352 RSPH10BP0C881 870 aa16.57■□□□□ 0.24
NUP54-213ENST00000513352 SRGAP2CP0DJJ0 459 aa16.57■□□□□ 0.24
NUP54-213ENST00000513352 MCM4P33991 863 aa16.57■□□□□ 0.24
NUP54-213ENST00000513352 LAMTOR4Q0VGL1 99 aa16.57■□□□□ 0.24
NUP54-213ENST00000513352 TFDP1Q14186 410 aa16.57■□□□□ 0.24
NUP54-213ENST00000513352 MXD4Q14582 209 aaPredicted RBP16.57■□□□□ 0.24
NUP54-213ENST00000513352 SCLYQ96I15 445 aa16.57■□□□□ 0.24
NUP54-213ENST00000513352 CELF4Q9BZC1 486 aaKnown RBP16.57■□□□□ 0.24
NUP54-213ENST00000513352 BLZF1Q9H2G9 400 aa16.57■□□□□ 0.24
NUP54-213ENST00000513352 KBTBD4Q9NVX7 518 aa16.57■□□□□ 0.24
NUP54-213ENST00000513352 DACT1Q9NYF0 836 aa16.57■□□□□ 0.24
NUP54-213ENST00000513352 CCDC169A6NNP5 214 aa16.56■□□□□ 0.24
NUP54-213ENST00000513352 ASAP2O43150 1006 aa16.56■□□□□ 0.24
NUP54-213ENST00000513352 TIMP1P01033 207 aa16.56■□□□□ 0.24
NUP54-213ENST00000513352 GLRA2P23416 452 aa16.56■□□□□ 0.24
NUP54-213ENST00000513352 CASP1P29466 404 aa16.56■□□□□ 0.24
NUP54-213ENST00000513352 ARL2P36404 184 aa16.56■□□□□ 0.24
NUP54-213ENST00000513352 GPC3P51654 580 aa16.56■□□□□ 0.24
NUP54-213ENST00000513352 RBL2Q08999 1139 aa16.56■□□□□ 0.24
NUP54-213ENST00000513352 DMP1Q13316 513 aaPredicted RBP16.56■□□□□ 0.24
NUP54-213ENST00000513352 GIT2Q14161 759 aa16.56■□□□□ 0.24
NUP54-213ENST00000513352 PPP2R5AQ15172 486 aa16.56■□□□□ 0.24
NUP54-213ENST00000513352 RPAINQ86UA6 219 aa16.56■□□□□ 0.24
NUP54-213ENST00000513352 RNF149Q8NC42 400 aa16.56■□□□□ 0.24
NUP54-213ENST00000513352 ENGASEQ8NFI3 743 aa16.56■□□□□ 0.24
NUP54-213ENST00000513352 DEPTORQ8TB45 409 aa16.56■□□□□ 0.24
NUP54-213ENST00000513352 PAGE5Q96GU1 130 aa16.56■□□□□ 0.24
NUP54-213ENST00000513352 OSMRQ99650 979 aa16.56■□□□□ 0.24
NUP54-213ENST00000513352 WNT8AQ9H1J5 351 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms