RNA–Protein interactions for RNA: ENST00000464493.5

SQSTM1-205, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-205ENST00000464493 RPS6KA5O75582 802 aa16.15■□□□□ 0.18
SQSTM1-205ENST00000464493 CD52P31358 61 aa16.15■□□□□ 0.18
SQSTM1-205ENST00000464493 PAK2Q13177 524 aa16.15■□□□□ 0.18
SQSTM1-205ENST00000464493 KSR1Q8IVT5 923 aa16.15■□□□□ 0.18
SQSTM1-205ENST00000464493 KCTD17Q8N5Z5 321 aa16.15■□□□□ 0.18
SQSTM1-205ENST00000464493 KRI1Q8N9T8 703 aaKnown RBP16.15■□□□□ 0.18
SQSTM1-205ENST00000464493 TMEM40Q8WWA1 233 aa16.15■□□□□ 0.18
SQSTM1-205ENST00000464493 PRPF31Q8WWY3 499 aaKnown RBP16.15■□□□□ 0.18
SQSTM1-205ENST00000464493 NLRP7Q8WX94 980 aa16.15■□□□□ 0.18
SQSTM1-205ENST00000464493 PSPC1Q8WXF1 523 aaKnown RBP16.15■□□□□ 0.18
SQSTM1-205ENST00000464493 CALML4Q96GE6 196 aa16.15■□□□□ 0.18
SQSTM1-205ENST00000464493 ZNF668Q96K58 619 aaPredicted RBP16.15■□□□□ 0.18
SQSTM1-205ENST00000464493 SCLT1Q96NL6 688 aa16.15■□□□□ 0.18
SQSTM1-205ENST00000464493 CLIC6Q96NY7 704 aa16.15■□□□□ 0.18
SQSTM1-205ENST00000464493 PNMA5Q96PV4 448 aa16.15■□□□□ 0.18
SQSTM1-205ENST00000464493 PLIN2Q99541 437 aa16.15■□□□□ 0.18
SQSTM1-205ENST00000464493 CSRNP2Q9H175 543 aa16.15■□□□□ 0.18
SQSTM1-205ENST00000464493 BHMT2Q9H2M3 363 aa16.15■□□□□ 0.18
SQSTM1-205ENST00000464493 XPNPEP1Q9NQW7 623 aa16.15■□□□□ 0.18
SQSTM1-205ENST00000464493 CFAP45Q9UL16 551 aa16.15■□□□□ 0.18
SQSTM1-205ENST00000464493 PADI3Q9ULW8 664 aa16.15■□□□□ 0.18
SQSTM1-205ENST00000464493 NOC2LQ9Y3T9 749 aaKnown RBP16.15■□□□□ 0.18
SQSTM1-205ENST00000464493 E9PMD0 336 aa16.14■□□□□ 0.17
SQSTM1-205ENST00000464493 GPR182O15218 404 aa16.14■□□□□ 0.17
SQSTM1-205ENST00000464493 SPTLC2O15270 562 aa16.14■□□□□ 0.17
SQSTM1-205ENST00000464493 USO1O60763 962 aaKnown RBP16.14■□□□□ 0.17
SQSTM1-205ENST00000464493 PPP6R2O75170 966 aa16.14■□□□□ 0.17
SQSTM1-205ENST00000464493 YEATS4O95619 227 aa16.14■□□□□ 0.17
SQSTM1-205ENST00000464493 EYA4O95677 639 aa16.14■□□□□ 0.17
SQSTM1-205ENST00000464493 EIF4BP23588 611 aaKnown RBP16.14■□□□□ 0.17
SQSTM1-205ENST00000464493 KCNJ6P48051 423 aa16.14■□□□□ 0.17
SQSTM1-205ENST00000464493 WDR5P61964 334 aaKnown RBP16.14■□□□□ 0.17
SQSTM1-205ENST00000464493 DNM1Q05193 864 aaKnown RBP16.14■□□□□ 0.17
SQSTM1-205ENST00000464493 GRB10Q13322 594 aa16.14■□□□□ 0.17
SQSTM1-205ENST00000464493 SPECC1Q5M775 1068 aa16.14■□□□□ 0.17
SQSTM1-205ENST00000464493 ODR4Q5SWX8 454 aa16.14■□□□□ 0.17
SQSTM1-205ENST00000464493 PADI6Q6TGC4 694 aa16.14■□□□□ 0.17
SQSTM1-205ENST00000464493 ZNF410Q86VK4 478 aa16.14■□□□□ 0.17
SQSTM1-205ENST00000464493 MCPH1Q8NEM0 835 aa16.14■□□□□ 0.17
SQSTM1-205ENST00000464493 PHOSPHO2Q8TCD6 241 aa16.14■□□□□ 0.17
SQSTM1-205ENST00000464493 GCOM2Q9BZD3 368 aaPredicted RBP16.14■□□□□ 0.17
SQSTM1-205ENST00000464493 COL4A3BPQ9Y5P4 624 aa16.14■□□□□ 0.17
SQSTM1-205ENST00000464493 A0A087WZ62 844 aa16.13■□□□□ 0.17
SQSTM1-205ENST00000464493 SOX1O00570 391 aaPredicted RBP16.13■□□□□ 0.17
SQSTM1-205ENST00000464493 SRGAP2CP0DJJ0 459 aa16.13■□□□□ 0.17
SQSTM1-205ENST00000464493 DARSP14868 501 aaKnown RBP16.13■□□□□ 0.17
SQSTM1-205ENST00000464493 ATP2A2P16615 1042 aaKnown RBP16.13■□□□□ 0.17
SQSTM1-205ENST00000464493 CYP11B2P19099 503 aa16.13■□□□□ 0.17
SQSTM1-205ENST00000464493 ARL2P36404 184 aa16.13■□□□□ 0.17
SQSTM1-205ENST00000464493 ANP32AP39687 249 aaKnown RBP16.13■□□□□ 0.17
SQSTM1-205ENST00000464493 SMAD3P84022 425 aaKnown RBP16.13■□□□□ 0.17
SQSTM1-205ENST00000464493 LAMTOR4Q0VGL1 99 aa16.13■□□□□ 0.17
SQSTM1-205ENST00000464493 NFX1Q12986 1120 aaKnown RBP16.13■□□□□ 0.17
SQSTM1-205ENST00000464493 MXD4Q14582 209 aaPredicted RBP16.13■□□□□ 0.17
SQSTM1-205ENST00000464493 TMEM119Q4V9L6 283 aa16.13■□□□□ 0.17
SQSTM1-205ENST00000464493 MAEAQ7L5Y9 396 aa16.13■□□□□ 0.17
SQSTM1-205ENST00000464493 KCNK18Q7Z418 384 aa16.13■□□□□ 0.17
SQSTM1-205ENST00000464493 RASSF8Q8NHQ8 419 aa16.13■□□□□ 0.17
SQSTM1-205ENST00000464493 EPSTI1Q96J88 318 aa16.13■□□□□ 0.17
SQSTM1-205ENST00000464493 NLRP4Q96MN2 994 aa16.13■□□□□ 0.17
SQSTM1-205ENST00000464493 SLC9A7Q96T83 725 aa16.13■□□□□ 0.17
SQSTM1-205ENST00000464493 FDXACB1Q9BRP7 624 aaPredicted RBP16.13■□□□□ 0.17
SQSTM1-205ENST00000464493 FTHL17Q9BXU8 183 aa16.13■□□□□ 0.17
SQSTM1-205ENST00000464493 CCSER1Q9C0I3 900 aa16.13■□□□□ 0.17
SQSTM1-205ENST00000464493 ERVK-5Q9HDB9 667 aa16.13■□□□□ 0.17
SQSTM1-205ENST00000464493 ST3GAL5Q9UNP4 418 aa16.13■□□□□ 0.17
SQSTM1-205ENST00000464493 ATP6V1DQ9Y5K8 247 aa16.13■□□□□ 0.17
SQSTM1-205ENST00000464493 GRXCR1A8MXD5 290 aa16.12■□□□□ 0.17
SQSTM1-205ENST00000464493 NUCB2P80303 420 aa16.12■□□□□ 0.17
SQSTM1-205ENST00000464493 KARSQ15046 597 aaKnown RBP16.12■□□□□ 0.17
SQSTM1-205ENST00000464493 FAM102BQ5T8I3 360 aa16.12■□□□□ 0.17
SQSTM1-205ENST00000464493 FAM109BQ6ICB4 259 aaPredicted RBP16.12■□□□□ 0.17
SQSTM1-205ENST00000464493 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.12■□□□□ 0.17
SQSTM1-205ENST00000464493 FAM43BQ6ZT52 329 aaPredicted RBP16.12■□□□□ 0.17
SQSTM1-205ENST00000464493 FAM228AQ86W67 206 aa16.12■□□□□ 0.17
SQSTM1-205ENST00000464493 KCNG4Q8TDN1 519 aa16.12■□□□□ 0.17
SQSTM1-205ENST00000464493 SYMPKQ92797 1274 aaKnown RBP16.12■□□□□ 0.17
SQSTM1-205ENST00000464493 INO80BQ9C086 356 aaPredicted RBP16.12■□□□□ 0.17
SQSTM1-205ENST00000464493 MICAL3Q7RTP6 2002 aa16.12■□□□□ 0.17
SQSTM1-205ENST00000464493 SZT2Q5T011 3432 aa16.11■□□□□ 0.17
SQSTM1-205ENST00000464493 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.11■□□□□ 0.17
SQSTM1-205ENST00000464493 ENPP3O14638 875 aa16.11■□□□□ 0.17
SQSTM1-205ENST00000464493 AMHP03971 560 aa16.11■□□□□ 0.17
SQSTM1-205ENST00000464493 DDIT3P35638 169 aa16.11■□□□□ 0.17
SQSTM1-205ENST00000464493 TXLNAP40222 546 aa16.11■□□□□ 0.17
SQSTM1-205ENST00000464493 FXR1P51114 621 aaKnown RBP eCLIP16.11■□□□□ 0.174e-6■□□□□ 9.8
SQSTM1-205ENST00000464493 DEFB103AP81534 67 aa16.11■□□□□ 0.17
SQSTM1-205ENST00000464493 RINT1Q6NUQ1 792 aa16.11■□□□□ 0.17
SQSTM1-205ENST00000464493 USP49Q70CQ1 688 aa16.11■□□□□ 0.17
SQSTM1-205ENST00000464493 SYT2Q8N9I0 419 aaPredicted RBP16.11■□□□□ 0.17
SQSTM1-205ENST00000464493 RNF149Q8NC42 400 aa16.11■□□□□ 0.17
SQSTM1-205ENST00000464493 ASAP3Q8TDY4 903 aa16.11■□□□□ 0.17
SQSTM1-205ENST00000464493 LRCH3Q96II8 777 aa16.11■□□□□ 0.17
SQSTM1-205ENST00000464493 POLR3FQ9H1D9 316 aaPredicted RBP16.11■□□□□ 0.17
SQSTM1-205ENST00000464493 TMX1Q9H3N1 280 aa16.11■□□□□ 0.17
SQSTM1-205ENST00000464493 IFT122Q9HBG6 1241 aa16.11■□□□□ 0.17
SQSTM1-205ENST00000464493 GPRC5CQ9NQ84 441 aa16.11■□□□□ 0.17
SQSTM1-205ENST00000464493 CCDC39Q9UFE4 941 aa16.11■□□□□ 0.17
SQSTM1-205ENST00000464493 RCOR1Q9UKL0 485 aa16.11■□□□□ 0.17
SQSTM1-205ENST00000464493 CSDE1O75534 798 aaKnown RBP16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms