RNA–Protein interactions for RNA: ENST00000439717.2

HSPG2-206, Transcript of heparan sulfate proteoglycan 2, humanhuman

TSL 2

Gene HSPG2, Length 637 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2-206ENST00000439717 HERC6Q8IVU3 1022 aa13.15□□□□□ -0.3
HSPG2-206ENST00000439717 MCPH1Q8NEM0 835 aa13.15□□□□□ -0.3
HSPG2-206ENST00000439717 TMEM40Q8WWA1 233 aa13.15□□□□□ -0.3
HSPG2-206ENST00000439717 PRPF31Q8WWY3 499 aaKnown RBP13.15□□□□□ -0.3
HSPG2-206ENST00000439717 NLRP7Q8WX94 980 aa13.15□□□□□ -0.3
HSPG2-206ENST00000439717 TMEM143Q96AN5 459 aa13.15□□□□□ -0.3
HSPG2-206ENST00000439717 LRCH3Q96II8 777 aa13.15□□□□□ -0.3
HSPG2-206ENST00000439717 SCLT1Q96NL6 688 aa13.15□□□□□ -0.3
HSPG2-206ENST00000439717 PPP1R16BQ96T49 567 aa13.15□□□□□ -0.3
HSPG2-206ENST00000439717 GCOM2Q9BZD3 368 aaPredicted RBP13.15□□□□□ -0.3
HSPG2-206ENST00000439717 INO80BQ9C086 356 aaPredicted RBP13.15□□□□□ -0.3
HSPG2-206ENST00000439717 ERVK-5Q9HDB9 667 aa13.15□□□□□ -0.3
HSPG2-206ENST00000439717 XPNPEP1Q9NQW7 623 aa13.15□□□□□ -0.3
HSPG2-206ENST00000439717 NOC2LQ9Y3T9 749 aaKnown RBP13.15□□□□□ -0.3
HSPG2-206ENST00000439717 COL4A3BPQ9Y5P4 624 aa13.15□□□□□ -0.3
HSPG2-206ENST00000439717 ARID2Q68CP9 1835 aa13.14□□□□□ -0.31
HSPG2-206ENST00000439717 TMEM265A0A087WTH1 108 aa13.14□□□□□ -0.31
HSPG2-206ENST00000439717 A0A087WWV3 80 aa13.14□□□□□ -0.31
HSPG2-206ENST00000439717 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.14□□□□□ -0.31
HSPG2-206ENST00000439717 ENPP3O14638 875 aa13.14□□□□□ -0.31
HSPG2-206ENST00000439717 USO1O60763 962 aaKnown RBP13.14□□□□□ -0.31
HSPG2-206ENST00000439717 YEATS4O95619 227 aa13.14□□□□□ -0.31
HSPG2-206ENST00000439717 BRD1O95696 1058 aa13.14□□□□□ -0.31
HSPG2-206ENST00000439717 CYP11B2P19099 503 aa13.14□□□□□ -0.31
HSPG2-206ENST00000439717 MARCKSP29966 332 aaPredicted RBP13.14□□□□□ -0.31
HSPG2-206ENST00000439717 DEFB103AP81534 67 aa13.14□□□□□ -0.31
HSPG2-206ENST00000439717 CEBPZQ03701 1054 aaKnown RBP13.14□□□□□ -0.31
HSPG2-206ENST00000439717 POU5F1BQ06416 359 aa13.14□□□□□ -0.31
HSPG2-206ENST00000439717 LAMTOR4Q0VGL1 99 aa13.14□□□□□ -0.31
HSPG2-206ENST00000439717 NFX1Q12986 1120 aaKnown RBP13.14□□□□□ -0.31
HSPG2-206ENST00000439717 FOXD4L5Q5VV16 416 aaPredicted RBP13.14□□□□□ -0.31
HSPG2-206ENST00000439717 PADI6Q6TGC4 694 aa13.14□□□□□ -0.31
HSPG2-206ENST00000439717 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.14□□□□□ -0.313e-7■■■■■ 32.4
HSPG2-206ENST00000439717 CABP7Q86V35 215 aa13.14□□□□□ -0.31
HSPG2-206ENST00000439717 FAM228AQ86W67 206 aa13.14□□□□□ -0.31
HSPG2-206ENST00000439717 LINC00301Q8NCQ3 95 aa13.14□□□□□ -0.31
HSPG2-206ENST00000439717 FOXD4L4Q8WXT5 416 aaPredicted RBP13.14□□□□□ -0.31
HSPG2-206ENST00000439717 CALML4Q96GE6 196 aa13.14□□□□□ -0.31
HSPG2-206ENST00000439717 CDK5RAP3Q96JB5 506 aa13.14□□□□□ -0.31
HSPG2-206ENST00000439717 MSRAQ9UJ68 235 aa13.14□□□□□ -0.31
HSPG2-206ENST00000439717 FBXO2Q9UK22 296 aaPredicted RBP13.14□□□□□ -0.31
HSPG2-206ENST00000439717 ST3GAL5Q9UNP4 418 aa13.14□□□□□ -0.31
HSPG2-206ENST00000439717 PCDHA11Q9Y5I1 949 aa13.14□□□□□ -0.31
HSPG2-206ENST00000439717 A0A087WZ62 844 aa13.13□□□□□ -0.31
HSPG2-206ENST00000439717 GRXCR1A8MXD5 290 aa13.13□□□□□ -0.31
HSPG2-206ENST00000439717 PPP6R2O75170 966 aa13.13□□□□□ -0.31
HSPG2-206ENST00000439717 GJB5O95377 273 aa13.13□□□□□ -0.31
HSPG2-206ENST00000439717 ARL2P36404 184 aa13.13□□□□□ -0.31
HSPG2-206ENST00000439717 GRIN1Q05586 938 aa13.13□□□□□ -0.31
HSPG2-206ENST00000439717 GRB10Q13322 594 aa13.13□□□□□ -0.31
HSPG2-206ENST00000439717 TFDP1Q14186 410 aa13.13□□□□□ -0.31
HSPG2-206ENST00000439717 STK38Q15208 465 aa13.13□□□□□ -0.31
HSPG2-206ENST00000439717 TMEM119Q4V9L6 283 aa13.13□□□□□ -0.31
HSPG2-206ENST00000439717 SRGAP1Q7Z6B7 1085 aa13.13□□□□□ -0.31
HSPG2-206ENST00000439717 KSR1Q8IVT5 923 aa13.13□□□□□ -0.31
HSPG2-206ENST00000439717 KRI1Q8N9T8 703 aaKnown RBP13.13□□□□□ -0.31
HSPG2-206ENST00000439717 TOP1MTQ969P6 601 aa13.13□□□□□ -0.31
HSPG2-206ENST00000439717 NLRP4Q96MN2 994 aa13.13□□□□□ -0.31
HSPG2-206ENST00000439717 PNMA5Q96PV4 448 aa13.13□□□□□ -0.31
HSPG2-206ENST00000439717 FDXACB1Q9BRP7 624 aaPredicted RBP13.13□□□□□ -0.31
HSPG2-206ENST00000439717 PBX4Q9BYU1 374 aa13.13□□□□□ -0.31
HSPG2-206ENST00000439717 CCSER1Q9C0I3 900 aa13.13□□□□□ -0.31
HSPG2-206ENST00000439717 CSRNP2Q9H175 543 aa13.13□□□□□ -0.31
HSPG2-206ENST00000439717 TSPYL2Q9H2G4 693 aaPredicted RBP13.13□□□□□ -0.31
HSPG2-206ENST00000439717 BHMT2Q9H2M3 363 aa13.13□□□□□ -0.31
HSPG2-206ENST00000439717 TMX1Q9H3N1 280 aa13.13□□□□□ -0.31
HSPG2-206ENST00000439717 BMP2KQ9NSY1 1161 aaPredicted RBP13.13□□□□□ -0.31
HSPG2-206ENST00000439717 CFAP45Q9UL16 551 aa13.13□□□□□ -0.31
HSPG2-206ENST00000439717 LAMA3Q16787 3333 aa13.13□□□□□ -0.31
HSPG2-206ENST00000439717 LAMA2P24043 3122 aaKnown RBP13.12□□□□□ -0.31
HSPG2-206ENST00000439717 E9PMD0 336 aa13.12□□□□□ -0.31
HSPG2-206ENST00000439717 SPTLC2O15270 562 aa13.12□□□□□ -0.31
HSPG2-206ENST00000439717 SRGAP2CP0DJJ0 459 aa13.12□□□□□ -0.31
HSPG2-206ENST00000439717 SFPQP23246 707 aaKnown RBP eCLIP13.12□□□□□ -0.31
HSPG2-206ENST00000439717 DNAJB2P25686 324 aa13.12□□□□□ -0.31
HSPG2-206ENST00000439717 PCBP1Q15365 356 aaKnown RBP eCLIP13.12□□□□□ -0.31
HSPG2-206ENST00000439717 ZRSR1Q15695 479 aaKnown RBP13.12□□□□□ -0.31
HSPG2-206ENST00000439717 MYOCDQ8IZQ8 938 aa13.12□□□□□ -0.31
HSPG2-206ENST00000439717 TIFAQ96CG3 184 aa13.12□□□□□ -0.31
HSPG2-206ENST00000439717 ZNF668Q96K58 619 aaPredicted RBP13.12□□□□□ -0.31
HSPG2-206ENST00000439717 RAD9AQ99638 391 aa13.12□□□□□ -0.31
HSPG2-206ENST00000439717 ZBED2Q9BTP6 218 aa13.12□□□□□ -0.31
HSPG2-206ENST00000439717 NFKBIZQ9BYH8 718 aa13.12□□□□□ -0.31
HSPG2-206ENST00000439717 POLR3FQ9H1D9 316 aaPredicted RBP13.12□□□□□ -0.31
HSPG2-206ENST00000439717 IFT122Q9HBG6 1241 aa13.12□□□□□ -0.31
HSPG2-206ENST00000439717 CHST12Q9NRB3 414 aa13.12□□□□□ -0.31
HSPG2-206ENST00000439717 RGS18Q9NS28 235 aa13.12□□□□□ -0.31
HSPG2-206ENST00000439717 C1orf112Q9NSG2 853 aa13.12□□□□□ -0.31
HSPG2-206ENST00000439717 RNF216Q9NWF9 866 aaPredicted RBP13.12□□□□□ -0.31
HSPG2-206ENST00000439717 TFIP11Q9UBB9 837 aaKnown RBP13.12□□□□□ -0.31
HSPG2-206ENST00000439717 ZDHHC9Q9Y397 364 aa13.12□□□□□ -0.31
HSPG2-206ENST00000439717 ATP6V1DQ9Y5K8 247 aa13.12□□□□□ -0.31
HSPG2-206ENST00000439717 MICAL3Q7RTP6 2002 aa13.12□□□□□ -0.31
HSPG2-206ENST00000439717 DENND3A2RUS2 1198 aa13.11□□□□□ -0.31
HSPG2-206ENST00000439717 TLL1O43897 1013 aa13.11□□□□□ -0.31
HSPG2-206ENST00000439717 ZSCAN20P17040 1043 aaPredicted RBP13.11□□□□□ -0.31
HSPG2-206ENST00000439717 GLRA2P23416 452 aa13.11□□□□□ -0.31
HSPG2-206ENST00000439717 TXLNAP40222 546 aa13.11□□□□□ -0.31
HSPG2-206ENST00000439717 PBX2P40425 430 aa13.11□□□□□ -0.31
HSPG2-206ENST00000439717 PHKA2P46019 1235 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms